RNA–Protein interactions for RNA: ENST00000425244.6

CUX1-205, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,776 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-205ENST00000425244 MEIS1O00470 390 aa11.75□□□□□ -0.53
CUX1-205ENST00000425244 CXCR5P32302 372 aa11.75□□□□□ -0.53
CUX1-205ENST00000425244 MAGEA1P43355 309 aa11.75□□□□□ -0.53
CUX1-205ENST00000425244 DNA2P51530 1060 aa11.75□□□□□ -0.53
CUX1-205ENST00000425244 HMGCS2P54868 508 aa11.75□□□□□ -0.53
CUX1-205ENST00000425244 EHHADHQ08426 723 aa11.75□□□□□ -0.53
CUX1-205ENST00000425244 IQCDQ96DY2 449 aa11.75□□□□□ -0.53
CUX1-205ENST00000425244 LSM14BQ9BX40 385 aaKnown RBP11.75□□□□□ -0.53
CUX1-205ENST00000425244 NT5C3AQ9H0P0 336 aa11.75□□□□□ -0.53
CUX1-205ENST00000425244 TAF1DQ9H5J8 278 aaPredicted RBP11.75□□□□□ -0.53
CUX1-205ENST00000425244 FAN1Q9Y2M0 1017 aa11.75□□□□□ -0.53
CUX1-205ENST00000425244 KDM3AQ9Y4C1 1321 aa11.75□□□□□ -0.53
CUX1-205ENST00000425244 ANO9A1A5B4 782 aa11.75□□□□□ -0.53
CUX1-205ENST00000425244 PPP1R12BO60237 982 aaPredicted RBP11.75□□□□□ -0.53
CUX1-205ENST00000425244 USP2O75604 605 aaPredicted RBP11.75□□□□□ -0.53
CUX1-205ENST00000425244 TUBBP07437 444 aa11.75□□□□□ -0.53
CUX1-205ENST00000425244 PTPRAP18433 802 aa11.75□□□□□ -0.53
CUX1-205ENST00000425244 HNRNPH3P31942 346 aaKnown RBP11.75□□□□□ -0.53
CUX1-205ENST00000425244 MAP1SQ66K74 1059 aaPredicted RBP11.75□□□□□ -0.53
CUX1-205ENST00000425244 WDR93Q6P2C0 686 aa11.75□□□□□ -0.53
CUX1-205ENST00000425244 PDXDC1Q6P996 788 aa11.75□□□□□ -0.53
CUX1-205ENST00000425244 FBXO11Q86XK2 927 aa11.75□□□□□ -0.53
CUX1-205ENST00000425244 CPXCR1Q8N123 301 aa11.75□□□□□ -0.53
CUX1-205ENST00000425244 CNPY4Q8N129 248 aa11.75□□□□□ -0.53
CUX1-205ENST00000425244 TRIM58Q8NG06 486 aa11.75□□□□□ -0.53
CUX1-205ENST00000425244 COG1Q8WTW3 980 aa11.75□□□□□ -0.53
CUX1-205ENST00000425244 BAP1Q92560 729 aa11.75□□□□□ -0.53
CUX1-205ENST00000425244 HOOK2Q96ED9 719 aa11.75□□□□□ -0.53
CUX1-205ENST00000425244 PURBQ96QR8 312 aaKnown RBP11.75□□□□□ -0.53
CUX1-205ENST00000425244 SMARCAL1Q9NZC9 954 aa11.75□□□□□ -0.53
CUX1-205ENST00000425244 SSC5DA1L4H1 1573 aa11.75□□□□□ -0.53
CUX1-205ENST00000425244 NCK2O43639 380 aa11.74□□□□□ -0.53
CUX1-205ENST00000425244 BUB1O43683 1085 aa11.74□□□□□ -0.53
CUX1-205ENST00000425244 MED24O75448 989 aa11.74□□□□□ -0.53
CUX1-205ENST00000425244 FLOT1O75955 427 aa11.74□□□□□ -0.53
CUX1-205ENST00000425244 POLR2FP61218 127 aaKnown RBP11.74□□□□□ -0.53
CUX1-205ENST00000425244 NFRKBQ6P4R8 1299 aa11.74□□□□□ -0.53
CUX1-205ENST00000425244 ALS2CR12Q96Q35 445 aa11.74□□□□□ -0.53
CUX1-205ENST00000425244 JRKLQ9Y4A0 524 aa11.74□□□□□ -0.53
CUX1-205ENST00000425244 CLGNO14967 610 aa11.74□□□□□ -0.53
CUX1-205ENST00000425244 HOXA13P31271 388 aaPredicted RBP11.74□□□□□ -0.53
CUX1-205ENST00000425244 KCNMA1Q12791 1236 aa11.74□□□□□ -0.53
CUX1-205ENST00000425244 VGLL4Q14135 290 aa11.74□□□□□ -0.53
CUX1-205ENST00000425244 USP50Q70EL3 339 aaPredicted RBP11.74□□□□□ -0.53
CUX1-205ENST00000425244 ZNF280CQ8ND82 737 aa11.74□□□□□ -0.53
CUX1-205ENST00000425244 MTMR8Q96EF0 704 aa11.74□□□□□ -0.53
CUX1-205ENST00000425244 L3MBTL3Q96JM7 780 aaPredicted RBP11.74□□□□□ -0.53
CUX1-205ENST00000425244 AMNQ9BXJ7 453 aa11.74□□□□□ -0.53
CUX1-205ENST00000425244 POLD4Q9HCU8 107 aa11.74□□□□□ -0.53
CUX1-205ENST00000425244 HOMER2Q9NSB8 354 aa11.74□□□□□ -0.53
CUX1-205ENST00000425244 SNX12Q9UMY4 172 aa11.74□□□□□ -0.53
CUX1-205ENST00000425244 UTP18Q9Y5J1 556 aaKnown RBP eCLIP11.74□□□□□ -0.53
CUX1-205ENST00000425244 ABCB11O95342 1321 aa11.74□□□□□ -0.53
CUX1-205ENST00000425244 IQCA1LA6NCM1 817 aa11.73□□□□□ -0.53
CUX1-205ENST00000425244 VCAM1P19320 739 aa11.73□□□□□ -0.53
CUX1-205ENST00000425244 PSEN1P49768 467 aa11.73□□□□□ -0.53
CUX1-205ENST00000425244 PABPC4Q13310 644 aaKnown RBP eCLIP11.73□□□□□ -0.532e-20■■■■■ 62.1
CUX1-205ENST00000425244 RAPGEF1Q13905 1077 aa11.73□□□□□ -0.53
CUX1-205ENST00000425244 ZCWPW2Q504Y3 356 aa11.73□□□□□ -0.53
CUX1-205ENST00000425244 TXLNBQ8N3L3 684 aa11.73□□□□□ -0.53
CUX1-205ENST00000425244 CHURC1Q8WUH1 139 aa11.73□□□□□ -0.53
CUX1-205ENST00000425244 CLMNQ96JQ2 1002 aa11.73□□□□□ -0.53
CUX1-205ENST00000425244 RPGRIP1Q96KN7 1286 aa11.73□□□□□ -0.53
CUX1-205ENST00000425244 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP11.73□□□□□ -0.534e-6■■■■□ 23.2
CUX1-205ENST00000425244 RRAGCQ9HB90 399 aa11.73□□□□□ -0.53
CUX1-205ENST00000425244 EHD2Q9NZN4 543 aa11.73□□□□□ -0.53
CUX1-205ENST00000425244 PPP2R3BQ9Y5P8 575 aa11.73□□□□□ -0.53
CUX1-205ENST00000425244 MYH7BA7E2Y1 1941 aa11.73□□□□□ -0.53
CUX1-205ENST00000425244 CYP11B2P19099 503 aa11.73□□□□□ -0.53
CUX1-205ENST00000425244 HNRNPH2P55795 449 aaKnown RBP11.73□□□□□ -0.53
CUX1-205ENST00000425244 ARHGAP4P98171 946 aa11.73□□□□□ -0.53
CUX1-205ENST00000425244 CYP4A11Q02928 519 aa11.73□□□□□ -0.53
CUX1-205ENST00000425244 ADAM9Q13443 819 aa11.73□□□□□ -0.53
CUX1-205ENST00000425244 MAP9Q49MG5 647 aa11.73□□□□□ -0.53
CUX1-205ENST00000425244 CCDC181Q5TID7 509 aa11.73□□□□□ -0.53
CUX1-205ENST00000425244 SFMBT2Q5VUG0 894 aa11.73□□□□□ -0.53
CUX1-205ENST00000425244 IQCEQ6IPM2 695 aa11.73□□□□□ -0.53
CUX1-205ENST00000425244 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.73□□□□□ -0.53
CUX1-205ENST00000425244 SCFD1Q8WVM8 642 aa11.73□□□□□ -0.53
CUX1-205ENST00000425244 CDCA5Q96FF9 252 aa11.73□□□□□ -0.53
CUX1-205ENST00000425244 NAP1L4Q99733 375 aaKnown RBP11.73□□□□□ -0.53
CUX1-205ENST00000425244 ACBD3Q9H3P7 528 aa11.73□□□□□ -0.53
CUX1-205ENST00000425244 RPAP3Q9H6T3 665 aaPredicted RBP11.73□□□□□ -0.53
CUX1-205ENST00000425244 ELP3Q9H9T3 547 aa11.73□□□□□ -0.53
CUX1-205ENST00000425244 EMILIN3Q9NT22 766 aa11.73□□□□□ -0.53
CUX1-205ENST00000425244 SALL4Q9UJQ4 1053 aa11.73□□□□□ -0.53
CUX1-205ENST00000425244 PITPNM2Q9BZ72 1349 aa11.73□□□□□ -0.53
CUX1-205ENST00000425244 CFBP00751 764 aa11.73□□□□□ -0.53
CUX1-205ENST00000425244 MCM3P25205 808 aa11.73□□□□□ -0.53
CUX1-205ENST00000425244 PSMC6P62333 389 aa11.73□□□□□ -0.53
CUX1-205ENST00000425244 SLC9C1Q4G0N8 1177 aa11.73□□□□□ -0.53
CUX1-205ENST00000425244 CCDC70Q6NSX1 233 aa11.73□□□□□ -0.53
CUX1-205ENST00000425244 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.73□□□□□ -0.536e-12■■■■■ 36.6
CUX1-205ENST00000425244 OTUD5Q96G74 571 aa11.73□□□□□ -0.53
CUX1-205ENST00000425244 P2RX7Q99572 595 aaKnown RBP11.73□□□□□ -0.53
CUX1-205ENST00000425244 KIAA1683Q9H0B3 1180 aa11.73□□□□□ -0.53
CUX1-205ENST00000425244 KCNMB3Q9NPA1 279 aa11.73□□□□□ -0.53
CUX1-205ENST00000425244 CSADQ9Y600 493 aa11.73□□□□□ -0.53
CUX1-205ENST00000425244 SPDYE3A6NKU9 549 aa11.72□□□□□ -0.53
CUX1-205ENST00000425244 MEIS2O14770 477 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms