RNA–Protein interactions for RNA: ENST00000411220.1

RNU4-88P-201, Transcript of RNA, U4 small nuclear 88, pseudogene, humanhuman

BASIC

Gene RNU4-88P, Length 86 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-88P-201ENST00000411220 FOXO3O43524 673 aa-0.52□□□□□ -2.49
RNU4-88P-201ENST00000411220 CKMP06732 381 aa-0.52□□□□□ -2.49
RNU4-88P-201ENST00000411220 PDE6AP16499 860 aa-0.52□□□□□ -2.49
RNU4-88P-201ENST00000411220 EPHB2P29323 1055 aa-0.52□□□□□ -2.49
RNU4-88P-201ENST00000411220 STAT5AP42229 794 aa-0.52□□□□□ -2.49
RNU4-88P-201ENST00000411220 ERVK11-1P61568 191 aa-0.52□□□□□ -2.49
RNU4-88P-201ENST00000411220 CLDN10P78369 228 aa-0.52□□□□□ -2.49
RNU4-88P-201ENST00000411220 RBM39Q14498 530 aaKnown RBP-0.52□□□□□ -2.49
RNU4-88P-201ENST00000411220 AKNAD1Q5T1N1 836 aa-0.52□□□□□ -2.49
RNU4-88P-201ENST00000411220 ZNF449Q6P9G9 518 aa-0.52□□□□□ -2.49
RNU4-88P-201ENST00000411220 LVRNQ6Q4G3 990 aa-0.52□□□□□ -2.49
RNU4-88P-201ENST00000411220 YTHDF3Q7Z739 585 aaKnown RBP-0.52□□□□□ -2.49
RNU4-88P-201ENST00000411220 GPR135Q8IZ08 494 aa-0.52□□□□□ -2.49
RNU4-88P-201ENST00000411220 LARGE2Q8N3Y3 721 aa-0.52□□□□□ -2.49
RNU4-88P-201ENST00000411220 CARD11Q9BXL7 1154 aa-0.52□□□□□ -2.49
RNU4-88P-201ENST00000411220 MOV10L1Q9BXT6 1211 aaKnown RBP-0.52□□□□□ -2.49
RNU4-88P-201ENST00000411220 CDCP1Q9H5V8 836 aa-0.52□□□□□ -2.49
RNU4-88P-201ENST00000411220 MTO1Q9Y2Z2 717 aaKnown RBP-0.52□□□□□ -2.49
RNU4-88P-201ENST00000411220 PCDHB5Q9Y5E4 795 aa-0.52□□□□□ -2.49
RNU4-88P-201ENST00000411220 TNXBP22105 4242 aa-0.52□□□□□ -2.49
RNU4-88P-201ENST00000411220 DMBT1Q9UGM3 2413 aaPredicted RBP-0.53□□□□□ -2.49
RNU4-88P-201ENST00000411220 KMT2BQ9UMN6 2715 aaPredicted RBP-0.53□□□□□ -2.49
RNU4-88P-201ENST00000411220 RNF213Q63HN8 5207 aa-0.53□□□□□ -2.49
RNU4-88P-201ENST00000411220 A0A0B4J293 547 aa-0.53□□□□□ -2.49
RNU4-88P-201ENST00000411220 PALM3A6NDB9 673 aaPredicted RBP-0.53□□□□□ -2.49
RNU4-88P-201ENST00000411220 EXTL3O43909 919 aa-0.53□□□□□ -2.49
RNU4-88P-201ENST00000411220 RPLP1P05386 114 aaKnown RBP-0.53□□□□□ -2.49
RNU4-88P-201ENST00000411220 ARNTP27540 789 aa-0.53□□□□□ -2.49
RNU4-88P-201ENST00000411220 GAS1P54826 345 aa-0.53□□□□□ -2.49
RNU4-88P-201ENST00000411220 SMAD3P84022 425 aaKnown RBP-0.53□□□□□ -2.49
RNU4-88P-201ENST00000411220 PTPN12Q05209 780 aaKnown RBP-0.53□□□□□ -2.49
RNU4-88P-201ENST00000411220 PMS2P11Q13670 270 aa-0.53□□□□□ -2.49
RNU4-88P-201ENST00000411220 NFYCQ13952 458 aa-0.53□□□□□ -2.49
RNU4-88P-201ENST00000411220 CR1LQ2VPA4 569 aa-0.53□□□□□ -2.49
RNU4-88P-201ENST00000411220 FAM26DQ5JW98 314 aa-0.53□□□□□ -2.49
RNU4-88P-201ENST00000411220 ZNF324BQ6AW86 544 aaPredicted RBP-0.53□□□□□ -2.49
RNU4-88P-201ENST00000411220 FBXO38Q6PIJ6 1188 aa-0.53□□□□□ -2.49
RNU4-88P-201ENST00000411220 SULF2Q8IWU5 870 aa-0.53□□□□□ -2.49
RNU4-88P-201ENST00000411220 SIX5Q8N196 739 aa-0.53□□□□□ -2.49
RNU4-88P-201ENST00000411220 NRACQ8N912 160 aa-0.53□□□□□ -2.49
RNU4-88P-201ENST00000411220 RNF31Q96EP0 1072 aa-0.53□□□□□ -2.49
RNU4-88P-201ENST00000411220 FAM193BQ96PV7 902 aaPredicted RBP-0.53□□□□□ -2.49
RNU4-88P-201ENST00000411220 SH2D3AQ9BRG2 576 aa-0.53□□□□□ -2.49
RNU4-88P-201ENST00000411220 ZNF275Q9NSD4 429 aaPredicted RBP-0.53□□□□□ -2.49
RNU4-88P-201ENST00000411220 SELENONQ9NZV5 590 aa-0.53□□□□□ -2.49
RNU4-88P-201ENST00000411220 RALYQ9UKM9 306 aaKnown RBP-0.53□□□□□ -2.49
RNU4-88P-201ENST00000411220 NDUFB9Q9Y6M9 179 aa-0.53□□□□□ -2.49
RNU4-88P-201ENST00000411220 NSD1Q96L73 2696 aaPredicted RBP-0.53□□□□□ -2.49
RNU4-88P-201ENST00000411220 NAV2Q8IVL1 2488 aa-0.54□□□□□ -2.5
RNU4-88P-201ENST00000411220 HYDINQ4G0P3 5121 aa-0.54□□□□□ -2.5
RNU4-88P-201ENST00000411220 PIPSLA2A3N6 862 aa-0.54□□□□□ -2.5
RNU4-88P-201ENST00000411220 KLRG2A4D1S0 409 aaPredicted RBP-0.54□□□□□ -2.5
RNU4-88P-201ENST00000411220 TMEM200CA6NKL6 621 aa-0.54□□□□□ -2.5
RNU4-88P-201ENST00000411220 GRXCR1A8MXD5 290 aa-0.54□□□□□ -2.5
RNU4-88P-201ENST00000411220 GOLGA6L6A8MZA4 724 aa-0.54□□□□□ -2.5
RNU4-88P-201ENST00000411220 ACOT8O14734 319 aa-0.54□□□□□ -2.5
RNU4-88P-201ENST00000411220 ARHGAP6O43182 974 aa-0.54□□□□□ -2.5
RNU4-88P-201ENST00000411220 PHACTR2O75167 634 aa-0.54□□□□□ -2.5
RNU4-88P-201ENST00000411220 PPP2R3AQ06190 1150 aa-0.54□□□□□ -2.5
RNU4-88P-201ENST00000411220 ZNF252P-AS1Q0IIN9 211 aa-0.54□□□□□ -2.5
RNU4-88P-201ENST00000411220 CCDC6Q16204 474 aa-0.54□□□□□ -2.5
RNU4-88P-201ENST00000411220 ZNF239Q16600 458 aaKnown RBP-0.54□□□□□ -2.5
RNU4-88P-201ENST00000411220 FAM126BQ8IXS8 530 aa-0.54□□□□□ -2.5
RNU4-88P-201ENST00000411220 NAT16Q8N8M0 369 aa-0.54□□□□□ -2.5
RNU4-88P-201ENST00000411220 CPT1CQ8TCG5 803 aa-0.54□□□□□ -2.5
RNU4-88P-201ENST00000411220 STK35Q8TDR2 534 aa-0.54□□□□□ -2.5
RNU4-88P-201ENST00000411220 CFHR4Q92496 578 aa-0.54□□□□□ -2.5
RNU4-88P-201ENST00000411220 JARID2Q92833 1246 aaPredicted RBP-0.54□□□□□ -2.5
RNU4-88P-201ENST00000411220 NUDT16Q96DE0 195 aaKnown RBP-0.54□□□□□ -2.5
RNU4-88P-201ENST00000411220 HINFPQ9BQA5 517 aa-0.54□□□□□ -2.5
RNU4-88P-201ENST00000411220 ASPNQ9BXN1 380 aa-0.54□□□□□ -2.5
RNU4-88P-201ENST00000411220 BRINP2Q9C0B6 783 aa-0.54□□□□□ -2.5
RNU4-88P-201ENST00000411220 SRCIN1Q9C0H9 1055 aa-0.54□□□□□ -2.5
RNU4-88P-201ENST00000411220 AP5S1Q9NUS5 200 aa-0.54□□□□□ -2.5
RNU4-88P-201ENST00000411220 ANKHD1Q8IWZ3 2542 aaKnown RBP-0.55□□□□□ -2.5
RNU4-88P-201ENST00000411220 PIK3CDO00329 1044 aa-0.55□□□□□ -2.5
RNU4-88P-201ENST00000411220 CHGBP05060 677 aa-0.55□□□□□ -2.5
RNU4-88P-201ENST00000411220 PRPH2P23942 346 aa-0.55□□□□□ -2.5
RNU4-88P-201ENST00000411220 RFC5P40937 340 aa-0.55□□□□□ -2.5
RNU4-88P-201ENST00000411220 DSCR10P59022 87 aa-0.55□□□□□ -2.5
RNU4-88P-201ENST00000411220 PIK3R6Q5UE93 754 aa-0.55□□□□□ -2.5
RNU4-88P-201ENST00000411220 SLC44A3Q8N4M1 653 aa-0.55□□□□□ -2.5
RNU4-88P-201ENST00000411220 UROC1Q96N76 676 aa-0.55□□□□□ -2.5
RNU4-88P-201ENST00000411220 EMILIN2Q9BXX0 1053 aa-0.55□□□□□ -2.5
RNU4-88P-201ENST00000411220 SNRKQ9NRH2 765 aa-0.55□□□□□ -2.5
RNU4-88P-201ENST00000411220 PLSCR4Q9NRQ2 329 aa-0.55□□□□□ -2.5
RNU4-88P-201ENST00000411220 PCDHA4Q9UN74 947 aa-0.55□□□□□ -2.5
RNU4-88P-201ENST00000411220 HERC1Q15751 4861 aa-0.55□□□□□ -2.5
RNU4-88P-201ENST00000411220 KIAA1109Q2LD37 5005 aa-0.55□□□□□ -2.5
RNU4-88P-201ENST00000411220 MAST3O60307 1309 aa-0.56□□□□□ -2.5
RNU4-88P-201ENST00000411220 LINC01548A6NM66 108 aa-0.56□□□□□ -2.5
RNU4-88P-201ENST00000411220 ZNF500O60304 480 aaPredicted RBP-0.56□□□□□ -2.5
RNU4-88P-201ENST00000411220 ARP10275 920 aa-0.56□□□□□ -2.5
RNU4-88P-201ENST00000411220 FGF3P11487 239 aaPredicted RBP-0.56□□□□□ -2.5
RNU4-88P-201ENST00000411220 CD19P15391 556 aa-0.56□□□□□ -2.5
RNU4-88P-201ENST00000411220 RRP1P56182 461 aaKnown RBP-0.56□□□□□ -2.5
RNU4-88P-201ENST00000411220 RESTQ13127 1097 aa-0.56□□□□□ -2.5
RNU4-88P-201ENST00000411220 DSC3Q14574 896 aa-0.56□□□□□ -2.5
RNU4-88P-201ENST00000411220 SKIV2LQ15477 1246 aaKnown RBP-0.56□□□□□ -2.5
RNU4-88P-201ENST00000411220 INPP5JQ15735 1006 aaPredicted RBP-0.56□□□□□ -2.5
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms