RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 USP17L10C9JJH3 530 aa12.97□□□□□ -0.33
HMGB1-206ENST00000405805 SLC37A4O43826 429 aa12.97□□□□□ -0.33
HMGB1-206ENST00000405805 SF3B3Q15393 1217 aaKnown RBP12.97□□□□□ -0.33
HMGB1-206ENST00000405805 TAF11Q15544 211 aa12.97□□□□□ -0.33
HMGB1-206ENST00000405805 NAALADL2Q58DX5 795 aa12.97□□□□□ -0.33
HMGB1-206ENST00000405805 WDR93Q6P2C0 686 aa12.97□□□□□ -0.33
HMGB1-206ENST00000405805 CCDC174Q6PII3 467 aa12.97□□□□□ -0.33
HMGB1-206ENST00000405805 TBC1D1Q86TI0 1168 aaPredicted RBP12.97□□□□□ -0.33
HMGB1-206ENST00000405805 LZTS2Q9BRK4 669 aa12.97□□□□□ -0.33
HMGB1-206ENST00000405805 ASIC3Q9UHC3 531 aa12.97□□□□□ -0.33
HMGB1-206ENST00000405805 STXBP3O00186 592 aa12.97□□□□□ -0.33
HMGB1-206ENST00000405805 RGS16O15492 202 aaPredicted RBP12.97□□□□□ -0.33
HMGB1-206ENST00000405805 RAD51CO43502 376 aa12.97□□□□□ -0.33
HMGB1-206ENST00000405805 PCP11498 1178 aaKnown RBP12.97□□□□□ -0.33
HMGB1-206ENST00000405805 PLCG2P16885 1265 aa12.97□□□□□ -0.33
HMGB1-206ENST00000405805 PSEN1P49768 467 aa12.97□□□□□ -0.33
HMGB1-206ENST00000405805 SNX1Q13596 522 aa12.97□□□□□ -0.33
HMGB1-206ENST00000405805 KCNB1Q14721 858 aa12.97□□□□□ -0.33
HMGB1-206ENST00000405805 TRIP13Q15645 432 aaPredicted RBP12.97□□□□□ -0.33
HMGB1-206ENST00000405805 GJB7Q6PEY0 223 aa12.97□□□□□ -0.33
HMGB1-206ENST00000405805 SLC30A9Q6PML9 568 aa12.97□□□□□ -0.33
HMGB1-206ENST00000405805 APTXQ7Z2E3 356 aaKnown RBP12.97□□□□□ -0.33
HMGB1-206ENST00000405805 CCDC127Q96BQ5 260 aa12.97□□□□□ -0.33
HMGB1-206ENST00000405805 SHISA4Q96DD7 197 aa12.97□□□□□ -0.33
HMGB1-206ENST00000405805 TAOK3Q9H2K8 898 aa12.97□□□□□ -0.33
HMGB1-206ENST00000405805 CUEDC2Q9H467 287 aa12.97□□□□□ -0.33
HMGB1-206ENST00000405805 GCNT4Q9P109 453 aa12.97□□□□□ -0.33
HMGB1-206ENST00000405805 LMO7Q8WWI1 1683 aa12.97□□□□□ -0.33
HMGB1-206ENST00000405805 NKRFO15226 690 aaKnown RBP eCLIP12.96□□□□□ -0.331e-9■□□□□ 9.2
HMGB1-206ENST00000405805 EIF3HO15372 352 aaKnown RBP eCLIP12.96□□□□□ -0.33
HMGB1-206ENST00000405805 TSNAXIP1Q2TAA8 658 aa12.96□□□□□ -0.33
HMGB1-206ENST00000405805 MAP7D1Q3KQU3 841 aa12.96□□□□□ -0.33
HMGB1-206ENST00000405805 ZNF746Q6NUN9 644 aaPredicted RBP12.96□□□□□ -0.33
HMGB1-206ENST00000405805 SPDYE1Q8NFV5 336 aaPredicted RBP12.96□□□□□ -0.33
HMGB1-206ENST00000405805 FRMD4BQ9Y2L6 1034 aa12.96□□□□□ -0.33
HMGB1-206ENST00000405805 ATP6V0A2Q9Y487 856 aa12.96□□□□□ -0.33
HMGB1-206ENST00000405805 KIF1AQ12756 1690 aa12.96□□□□□ -0.33
HMGB1-206ENST00000405805 CYTH3O43739 400 aa12.96□□□□□ -0.33
HMGB1-206ENST00000405805 SORBS3O60504 671 aa12.96□□□□□ -0.33
HMGB1-206ENST00000405805 RFC1P35251 1148 aaPredicted RBP12.96□□□□□ -0.33
HMGB1-206ENST00000405805 PLCB3Q01970 1234 aa12.96□□□□□ -0.33
HMGB1-206ENST00000405805 GRM4Q14833 912 aa12.96□□□□□ -0.33
HMGB1-206ENST00000405805 IL17RBQ9NRM6 502 aa12.96□□□□□ -0.33
HMGB1-206ENST00000405805 KDM3BQ7LBC6 1761 aa12.96□□□□□ -0.33
HMGB1-206ENST00000405805 ORC4O43929 436 aa12.96□□□□□ -0.34
HMGB1-206ENST00000405805 GDF11O95390 407 aa12.96□□□□□ -0.34
HMGB1-206ENST00000405805 PAPD7Q5XG87 772 aaKnown RBP12.96□□□□□ -0.34
HMGB1-206ENST00000405805 ALS2CLQ60I27 953 aa12.96□□□□□ -0.34
HMGB1-206ENST00000405805 PDXDC1Q6P996 788 aa12.96□□□□□ -0.34
HMGB1-206ENST00000405805 SLC51AQ86UW1 340 aa12.96□□□□□ -0.34
HMGB1-206ENST00000405805 KIAA0895Q8NCT3 520 aa12.96□□□□□ -0.34
HMGB1-206ENST00000405805 FBXL5Q9UKA1 691 aa12.96□□□□□ -0.34
HMGB1-206ENST00000405805 PLAGL2Q9UPG8 496 aa12.96□□□□□ -0.34
HMGB1-206ENST00000405805 PGRMC1O00264 195 aaKnown RBP12.95□□□□□ -0.34
HMGB1-206ENST00000405805 LAD1O00515 517 aa12.95□□□□□ -0.34
HMGB1-206ENST00000405805 CALCOCO2Q13137 446 aa12.95□□□□□ -0.34
HMGB1-206ENST00000405805 MUM1Q2TAK8 710 aa12.95□□□□□ -0.34
HMGB1-206ENST00000405805 GKAP1Q5VSY0 366 aaPredicted RBP12.95□□□□□ -0.34
HMGB1-206ENST00000405805 DENND2CQ68D51 928 aa12.95□□□□□ -0.34
HMGB1-206ENST00000405805 GALNT17Q6IS24 598 aa12.95□□□□□ -0.34
HMGB1-206ENST00000405805 PPFIBP2Q8ND30 876 aa12.95□□□□□ -0.34
HMGB1-206ENST00000405805 RMI1Q9H9A7 625 aa12.95□□□□□ -0.34
HMGB1-206ENST00000405805 TBK1Q9UHD2 729 aa12.95□□□□□ -0.34
HMGB1-206ENST00000405805 PHF20L1A8MW92 1017 aa12.95□□□□□ -0.34
HMGB1-206ENST00000405805 KRT5P13647 590 aa12.95□□□□□ -0.34
HMGB1-206ENST00000405805 PBX1P40424 430 aa12.95□□□□□ -0.34
HMGB1-206ENST00000405805 RCAN1P53805 252 aa12.95□□□□□ -0.34
HMGB1-206ENST00000405805 TMEM132AQ24JP5 1023 aa12.95□□□□□ -0.34
HMGB1-206ENST00000405805 HAUS3Q68CZ6 603 aa12.95□□□□□ -0.34
HMGB1-206ENST00000405805 GSTA5Q7RTV2 222 aa12.95□□□□□ -0.34
HMGB1-206ENST00000405805 SFR1Q86XK3 245 aa12.95□□□□□ -0.34
HMGB1-206ENST00000405805 MDM1Q8TC05 714 aa12.95□□□□□ -0.34
HMGB1-206ENST00000405805 TRIM51Q9BSJ1 452 aa12.95□□□□□ -0.34
HMGB1-206ENST00000405805 HOMER2Q9NSB8 354 aa12.95□□□□□ -0.34
HMGB1-206ENST00000405805 SART1O43290 800 aaKnown RBP12.95□□□□□ -0.34
HMGB1-206ENST00000405805 CREB3O43889 395 aa12.95□□□□□ -0.34
HMGB1-206ENST00000405805 TAL1P17542 331 aaPredicted RBP12.95□□□□□ -0.34
HMGB1-206ENST00000405805 LSP1P33241 339 aa12.95□□□□□ -0.34
HMGB1-206ENST00000405805 HDLBPQ00341 1268 aaKnown RBP12.95□□□□□ -0.34
HMGB1-206ENST00000405805 CTTNQ14247 550 aaKnown RBP12.95□□□□□ -0.34
HMGB1-206ENST00000405805 GLYCTKQ8IVS8 523 aa12.95□□□□□ -0.34
HMGB1-206ENST00000405805 CPXCR1Q8N123 301 aa12.95□□□□□ -0.34
HMGB1-206ENST00000405805 SPATA20Q8TB22 786 aa12.95□□□□□ -0.34
HMGB1-206ENST00000405805 RAD54LQ92698 747 aa12.95□□□□□ -0.34
HMGB1-206ENST00000405805 CCT8L2Q96SF2 557 aa12.95□□□□□ -0.34
HMGB1-206ENST00000405805 ADAM33Q9BZ11 813 aa12.95□□□□□ -0.34
HMGB1-206ENST00000405805 NT5C3AQ9H0P0 336 aa12.95□□□□□ -0.34
HMGB1-206ENST00000405805 KBTBD4Q9NVX7 518 aa12.95□□□□□ -0.34
HMGB1-206ENST00000405805 MAD2L2Q9UI95 211 aa12.95□□□□□ -0.34
HMGB1-206ENST00000405805 RASAL2Q9UJF2 1139 aa12.95□□□□□ -0.34
HMGB1-206ENST00000405805 TNS2Q63HR2 1409 aa12.95□□□□□ -0.34
HMGB1-206ENST00000405805 MRC1P22897 1456 aa12.95□□□□□ -0.34
HMGB1-206ENST00000405805 TARSL2A2RTX5 802 aaKnown RBP12.95□□□□□ -0.34
HMGB1-206ENST00000405805 TRAF1Q13077 416 aa12.95□□□□□ -0.34
HMGB1-206ENST00000405805 GRAPQ13588 217 aa12.95□□□□□ -0.34
HMGB1-206ENST00000405805 ELOA2Q8IYF1 753 aaPredicted RBP12.95□□□□□ -0.34
HMGB1-206ENST00000405805 SEPT12Q8IYM1 358 aa12.95□□□□□ -0.34
HMGB1-206ENST00000405805 GRAPLQ8TC17 118 aaPredicted RBP12.95□□□□□ -0.34
HMGB1-206ENST00000405805 MXD3Q9BW11 206 aa12.95□□□□□ -0.34
HMGB1-206ENST00000405805 TMOD4Q9NZQ9 345 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms