RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 KRT71Q3SY84 523 aa22.92■■□□□ 1.26
CTCF-202ENST00000401394 FAM228AQ86W67 206 aa22.92■■□□□ 1.26
CTCF-202ENST00000401394 PALB2Q86YC2 1186 aa22.92■■□□□ 1.26
CTCF-202ENST00000401394 TPCN2Q8NHX9 752 aa22.92■■□□□ 1.26
CTCF-202ENST00000401394 CCDC114Q96M63 670 aa22.92■■□□□ 1.26
CTCF-202ENST00000401394 MYCBPQ99417 103 aaPredicted RBP22.92■■□□□ 1.26
CTCF-202ENST00000401394 AIPL1Q9NZN9 384 aa22.92■■□□□ 1.26
CTCF-202ENST00000401394 PNMA2Q9UL42 364 aa22.92■■□□□ 1.26
CTCF-202ENST00000401394 MYH4Q9Y623 1939 aa22.92■■□□□ 1.26
CTCF-202ENST00000401394 GMNCA6NCL1 334 aa22.92■■□□□ 1.26
CTCF-202ENST00000401394 FOXO6A8MYZ6 492 aa22.92■■□□□ 1.26
CTCF-202ENST00000401394 ZBTB39O15060 712 aa22.92■■□□□ 1.26
CTCF-202ENST00000401394 ZBTB48P10074 688 aaPredicted RBP22.92■■□□□ 1.26
CTCF-202ENST00000401394 SWT1Q5T5J6 900 aaKnown RBP22.92■■□□□ 1.26
CTCF-202ENST00000401394 C6orf89Q6UWU4 347 aa22.92■■□□□ 1.26
CTCF-202ENST00000401394 PEX26Q7Z412 305 aa22.92■■□□□ 1.26
CTCF-202ENST00000401394 PLCB1Q9NQ66 1216 aa22.92■■□□□ 1.26
CTCF-202ENST00000401394 TSKSQ9UJT2 592 aa22.92■■□□□ 1.26
CTCF-202ENST00000401394 HMGB1P1B2RPK0 211 aaPredicted RBP22.91■■□□□ 1.26
CTCF-202ENST00000401394 MAP2K2P36507 400 aa22.91■■□□□ 1.26
CTCF-202ENST00000401394 RHBDL3P58872 404 aa22.91■■□□□ 1.26
CTCF-202ENST00000401394 SFR1Q86XK3 245 aa22.91■■□□□ 1.26
CTCF-202ENST00000401394 CD302Q8IX05 232 aa22.91■■□□□ 1.26
CTCF-202ENST00000401394 VCPKMTQ9H867 229 aa22.91■■□□□ 1.26
CTCF-202ENST00000401394 GOPCQ9HD26 462 aa22.91■■□□□ 1.26
CTCF-202ENST00000401394 PPP1R9AQ9ULJ8 1098 aa22.91■■□□□ 1.26
CTCF-202ENST00000401394 DDX3XO00571 662 aaKnown RBP eCLIP22.91■■□□□ 1.266e-7■■□□□ 14
CTCF-202ENST00000401394 FGGP02679 453 aa22.91■■□□□ 1.26
CTCF-202ENST00000401394 SCLT1Q96NL6 688 aa22.91■■□□□ 1.26
CTCF-202ENST00000401394 LZTS2Q9BRK4 669 aa22.91■■□□□ 1.26
CTCF-202ENST00000401394 FRMD3A2A2Y4 597 aa22.9■■□□□ 1.26
CTCF-202ENST00000401394 CAND2O75155 1236 aa22.9■■□□□ 1.26
CTCF-202ENST00000401394 GLYCTKQ8IVS8 523 aa22.9■■□□□ 1.26
CTCF-202ENST00000401394 WDR66Q8TBY9 1149 aa22.9■■□□□ 1.26
CTCF-202ENST00000401394 MTMR4Q9NYA4 1195 aa22.9■■□□□ 1.26
CTCF-202ENST00000401394 TAS2R14Q9NYV8 317 aa22.9■■□□□ 1.26
CTCF-202ENST00000401394 SLC10A5Q5PT55 438 aa22.9■■□□□ 1.26
CTCF-202ENST00000401394 CYP2W1Q8TAV3 490 aa22.9■■□□□ 1.26
CTCF-202ENST00000401394 SEC16BQ96JE7 1060 aa22.9■■□□□ 1.26
CTCF-202ENST00000401394 ROBO3Q96MS0 1386 aa22.9■■□□□ 1.26
CTCF-202ENST00000401394 COL22A1Q8NFW1 1626 aaPredicted RBP22.9■■□□□ 1.26
CTCF-202ENST00000401394 GOLGA6L7A0A1B0GV03 622 aa22.89■■□□□ 1.26
CTCF-202ENST00000401394 MPHOSPH10O00566 681 aaKnown RBP22.89■■□□□ 1.26
CTCF-202ENST00000401394 SLCO1A2P46721 670 aa22.89■■□□□ 1.26
CTCF-202ENST00000401394 GPSM2P81274 684 aa22.89■■□□□ 1.26
CTCF-202ENST00000401394 PDIA5Q14554 519 aa22.89■■□□□ 1.26
CTCF-202ENST00000401394 MFSD14BQ5SR56 506 aa22.89■■□□□ 1.26
CTCF-202ENST00000401394 DCAF12L1Q5VU92 463 aa22.89■■□□□ 1.26
CTCF-202ENST00000401394 RUBCNQ92622 972 aa22.89■■□□□ 1.26
CTCF-202ENST00000401394 CXorf56Q9H5V9 222 aa22.89■■□□□ 1.26
CTCF-202ENST00000401394 DDX4Q9NQI0 724 aaKnown RBP22.89■■□□□ 1.26
CTCF-202ENST00000401394 GEMIN8Q9NWZ8 242 aaKnown RBP22.89■■□□□ 1.26
CTCF-202ENST00000401394 TMOD4Q9NZQ9 345 aa22.89■■□□□ 1.26
CTCF-202ENST00000401394 TRAPPC3O43617 180 aa22.89■■□□□ 1.25
CTCF-202ENST00000401394 YY1AP1Q9H869 796 aa22.89■■□□□ 1.25
CTCF-202ENST00000401394 EPB41L3Q9Y2J2 1087 aaPredicted RBP22.89■■□□□ 1.25
CTCF-202ENST00000401394 COG2Q14746 738 aa22.89■■□□□ 1.25
CTCF-202ENST00000401394 EXOC3L4Q17RC7 722 aa22.89■■□□□ 1.25
CTCF-202ENST00000401394 CPNE8Q86YQ8 564 aa22.89■■□□□ 1.25
CTCF-202ENST00000401394 PROM2Q8N271 834 aa22.89■■□□□ 1.25
CTCF-202ENST00000401394 IQCDQ96DY2 449 aa22.89■■□□□ 1.25
CTCF-202ENST00000401394 RAB34Q9BZG1 259 aa22.89■■□□□ 1.25
CTCF-202ENST00000401394 RNF14Q9UBS8 474 aa22.89■■□□□ 1.25
CTCF-202ENST00000401394 PGRMC1O00264 195 aaKnown RBP22.88■■□□□ 1.25
CTCF-202ENST00000401394 CCDC121Q6ZUS5 278 aa22.88■■□□□ 1.25
CTCF-202ENST00000401394 TMC3Q7Z5M5 1100 aa22.88■■□□□ 1.25
CTCF-202ENST00000401394 REEP2Q9BRK0 252 aa22.88■■□□□ 1.25
CTCF-202ENST00000401394 PSTPIP2Q9H939 334 aa22.88■■□□□ 1.25
CTCF-202ENST00000401394 SEPT11Q9NVA2 429 aaKnown RBP22.88■■□□□ 1.25
CTCF-202ENST00000401394 BUB1BO60566 1050 aaPredicted RBP22.88■■□□□ 1.25
CTCF-202ENST00000401394 RASSF9O75901 435 aa22.88■■□□□ 1.25
CTCF-202ENST00000401394 CATSPER3Q86XQ3 398 aa22.88■■□□□ 1.25
CTCF-202ENST00000401394 BUD13Q9BRD0 619 aaKnown RBP eCLIP22.88■■□□□ 1.255e-8■■■□□ 15.1
CTCF-202ENST00000401394 BMP2KQ9NSY1 1161 aaPredicted RBP22.88■■□□□ 1.25
CTCF-202ENST00000401394 AHDC1Q5TGY3 1603 aaPredicted RBP22.88■■□□□ 1.25
CTCF-202ENST00000401394 ABCB11O95342 1321 aa22.88■■□□□ 1.25
CTCF-202ENST00000401394 HGSO14964 777 aaPredicted RBP22.87■■□□□ 1.25
CTCF-202ENST00000401394 CETN3O15182 167 aa22.87■■□□□ 1.25
CTCF-202ENST00000401394 PPP4CP60510 307 aa22.87■■□□□ 1.25
CTCF-202ENST00000401394 SEMA3FQ13275 785 aa22.87■■□□□ 1.25
CTCF-202ENST00000401394 PRR16Q569H4 304 aa22.87■■□□□ 1.25
CTCF-202ENST00000401394 CCDC91Q7Z6B0 441 aa22.87■■□□□ 1.25
CTCF-202ENST00000401394 CCDC65Q8IXS2 484 aa22.87■■□□□ 1.25
CTCF-202ENST00000401394 LNX1Q8TBB1 728 aaPredicted RBP22.87■■□□□ 1.25
CTCF-202ENST00000401394 ARMCX3Q9UH62 379 aaPredicted RBP22.87■■□□□ 1.25
CTCF-202ENST00000401394 UFL1O94874 794 aa22.87■■□□□ 1.25
CTCF-202ENST00000401394 GALCP54803 685 aa22.87■■□□□ 1.25
CTCF-202ENST00000401394 IFI35P80217 286 aaPredicted RBP22.87■■□□□ 1.25
CTCF-202ENST00000401394 PSMD2Q13200 908 aa22.87■■□□□ 1.25
CTCF-202ENST00000401394 CCDC38Q502W7 563 aa22.87■■□□□ 1.25
CTCF-202ENST00000401394 ZC2HC1CQ53FD0 456 aaPredicted RBP22.87■■□□□ 1.25
CTCF-202ENST00000401394 TPTE2Q6XPS3 522 aa22.87■■□□□ 1.25
CTCF-202ENST00000401394 SYN2Q92777 582 aaPredicted RBP22.87■■□□□ 1.25
CTCF-202ENST00000401394 ARHGEF26Q96DR7 871 aa22.87■■□□□ 1.25
CTCF-202ENST00000401394 CD209Q9NNX6 404 aa22.87■■□□□ 1.25
CTCF-202ENST00000401394 SNX24Q9Y343 169 aa22.87■■□□□ 1.25
CTCF-202ENST00000401394 PPP2R2AP63151 447 aa22.86■■□□□ 1.25
CTCF-202ENST00000401394 EDEM3Q9BZQ6 932 aa22.86■■□□□ 1.25
CTCF-202ENST00000401394 SIX2Q9NPC8 291 aa22.86■■□□□ 1.25
CTCF-202ENST00000401394 GCNT4Q9P109 453 aa22.86■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms