RNA–Protein interactions for RNA: ENST00000397004.8

NUP98-204, Transcript of nucleoporin 98, humanhuman

TSL 1 (best) BASIC

Gene NUP98, Length 3,923 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98-204ENST00000397004 DDX3XO00571 662 aaKnown RBP eCLIP15.25■□□□□ 0.036e-14■■■■■ 29.3
NUP98-204ENST00000397004 TTI1O43156 1089 aa15.25■□□□□ 0.03
NUP98-204ENST00000397004 RSPH10BP0C881 870 aa15.25■□□□□ 0.03
NUP98-204ENST00000397004 ASIC2Q16515 512 aa15.25■□□□□ 0.03
NUP98-204ENST00000397004 SLC30A10Q6XR72 485 aa15.25■□□□□ 0.03
NUP98-204ENST00000397004 GPBP1Q86WP2 473 aa15.25■□□□□ 0.03
NUP98-204ENST00000397004 ACTRT1Q8TDG2 376 aa15.25■□□□□ 0.03
NUP98-204ENST00000397004 ATP8B4Q8TF62 1192 aa15.25■□□□□ 0.03
NUP98-204ENST00000397004 BTNL10A8MVZ5 291 aa15.24■□□□□ 0.03
NUP98-204ENST00000397004 ONECUT3O60422 494 aaPredicted RBP15.24■□□□□ 0.03
NUP98-204ENST00000397004 HSPA1LP34931 641 aa15.24■□□□□ 0.03
NUP98-204ENST00000397004 HLTFQ14527 1009 aaKnown RBP eCLIP15.24■□□□□ 0.035e-6■□□□□ 9.5
NUP98-204ENST00000397004 RPS6KA1Q15418 735 aa15.24■□□□□ 0.03
NUP98-204ENST00000397004 YTHDF3Q7Z739 585 aaKnown RBP15.24■□□□□ 0.03
NUP98-204ENST00000397004 SLFN11Q7Z7L1 901 aa15.24■□□□□ 0.03
NUP98-204ENST00000397004 HMGB1P1B2RPK0 211 aaPredicted RBP15.24■□□□□ 0.03
NUP98-204ENST00000397004 TRAPPC3O43617 180 aa15.24■□□□□ 0.03
NUP98-204ENST00000397004 ACTN3Q08043 901 aaPredicted RBP15.24■□□□□ 0.03
NUP98-204ENST00000397004 SF3B2Q13435 895 aaKnown RBP15.24■□□□□ 0.03
NUP98-204ENST00000397004 KCTD1Q719H9 257 aa15.24■□□□□ 0.03
NUP98-204ENST00000397004 B4GALNT4Q76KP1 1039 aa15.24■□□□□ 0.03
NUP98-204ENST00000397004 HDAC9Q9UKV0 1011 aa15.24■□□□□ 0.03
NUP98-204ENST00000397004 NR2F2P24468 414 aa15.24■□□□□ 0.03
NUP98-204ENST00000397004 MDM1Q8TC05 714 aa15.24■□□□□ 0.03
NUP98-204ENST00000397004 ARHGEF1Q92888 912 aaKnown RBP15.24■□□□□ 0.03
NUP98-204ENST00000397004 MTFR1LQ9H019 292 aa15.24■□□□□ 0.03
NUP98-204ENST00000397004 LEMD3Q9Y2U8 911 aa15.24■□□□□ 0.03
NUP98-204ENST00000397004 RTCBQ9Y3I0 505 aaKnown RBP15.24■□□□□ 0.03
NUP98-204ENST00000397004 JAM2P57087 298 aa15.24■□□□□ 0.03
NUP98-204ENST00000397004 ZNF543Q08ER8 600 aa15.24■□□□□ 0.03
NUP98-204ENST00000397004 EPHA7Q15375 998 aa15.24■□□□□ 0.03
NUP98-204ENST00000397004 ALKBH5Q6P6C2 394 aaKnown RBP15.24■□□□□ 0.03
NUP98-204ENST00000397004 TMC3Q7Z5M5 1100 aa15.24■□□□□ 0.03
NUP98-204ENST00000397004 VCPKMTQ9H867 229 aa15.24■□□□□ 0.03
NUP98-204ENST00000397004 KCNMB3Q9NPA1 279 aa15.24■□□□□ 0.03
NUP98-204ENST00000397004 CNTNAP4Q9C0A0 1308 aa15.23■□□□□ 0.03
NUP98-204ENST00000397004 SPATA31C1P0DKV0 1188 aa15.23■□□□□ 0.03
NUP98-204ENST00000397004 IRX3P78415 501 aaPredicted RBP15.23■□□□□ 0.03
NUP98-204ENST00000397004 GIT2Q14161 759 aa15.23■□□□□ 0.03
NUP98-204ENST00000397004 DPP8Q6V1X1 898 aaPredicted RBP15.23■□□□□ 0.03
NUP98-204ENST00000397004 NT5DC3Q86UY8 548 aa15.23■□□□□ 0.03
NUP98-204ENST00000397004 CATSPER3Q86XQ3 398 aa15.23■□□□□ 0.03
NUP98-204ENST00000397004 LNX1Q8TBB1 728 aaPredicted RBP15.23■□□□□ 0.03
NUP98-204ENST00000397004 SEC14L1Q92503 715 aa15.23■□□□□ 0.03
NUP98-204ENST00000397004 TRIM51Q9BSJ1 452 aa15.23■□□□□ 0.03
NUP98-204ENST00000397004 ERVK-5Q9HDB9 667 aa15.23■□□□□ 0.03
NUP98-204ENST00000397004 F8W031 263 aaPredicted RBP15.23■□□□□ 0.03
NUP98-204ENST00000397004 MNAT1P51948 309 aa15.23■□□□□ 0.03
NUP98-204ENST00000397004 EPM2AIP1Q7L775 607 aaPredicted RBP15.23■□□□□ 0.03
NUP98-204ENST00000397004 NCAPGQ9BPX3 1015 aa15.23■□□□□ 0.03
NUP98-204ENST00000397004 TXLNGYQ9BZA5 131 aa15.23■□□□□ 0.03
NUP98-204ENST00000397004 NUCKS1Q9H1E3 243 aaKnown RBP15.23■□□□□ 0.03
NUP98-204ENST00000397004 BRWD3Q6RI45 1802 aa15.23■□□□□ 0.03
NUP98-204ENST00000397004 FOCADQ5VW36 1801 aa15.23■□□□□ 0.03
NUP98-204ENST00000397004 SHBGP04278 402 aa15.23■□□□□ 0.03
NUP98-204ENST00000397004 AADACL2Q6P093 401 aa15.23■□□□□ 0.03
NUP98-204ENST00000397004 TPTE2Q6XPS3 522 aa15.23■□□□□ 0.03
NUP98-204ENST00000397004 PALB2Q86YC2 1186 aa15.23■□□□□ 0.03
NUP98-204ENST00000397004 RASGEF1CQ8N431 466 aa15.23■□□□□ 0.03
NUP98-204ENST00000397004 RAPGEF5Q92565 580 aa15.23■□□□□ 0.03
NUP98-204ENST00000397004 PNMA6FA0A0J9YX94 578 aa15.22■□□□□ 0.03
NUP98-204ENST00000397004 GNPATO15228 680 aa15.22■□□□□ 0.03
NUP98-204ENST00000397004 CLSTN1O94985 981 aa15.22■□□□□ 0.03
NUP98-204ENST00000397004 PICALMQ13492 652 aa15.22■□□□□ 0.03
NUP98-204ENST00000397004 PPP1R9AQ9ULJ8 1098 aa15.22■□□□□ 0.03
NUP98-204ENST00000397004 ASTN1O14525 1302 aa15.22■□□□□ 0.03
NUP98-204ENST00000397004 PHF20L1A8MW92 1017 aa15.22■□□□□ 0.03
NUP98-204ENST00000397004 CTNNA1P35221 906 aaKnown RBP15.22■□□□□ 0.03
NUP98-204ENST00000397004 NT5C2P49902 561 aa15.22■□□□□ 0.03
NUP98-204ENST00000397004 GRAPQ13588 217 aa15.22■□□□□ 0.03
NUP98-204ENST00000397004 GRAPLQ8TC17 118 aaPredicted RBP15.22■□□□□ 0.03
NUP98-204ENST00000397004 ZKSCAN4Q969J2 545 aaPredicted RBP15.22■□□□□ 0.03
NUP98-204ENST00000397004 NYXQ9GZU5 481 aa15.22■□□□□ 0.03
NUP98-204ENST00000397004 GEMIN8Q9NWZ8 242 aaKnown RBP15.22■□□□□ 0.03
NUP98-204ENST00000397004 PLIN4Q96Q06 1357 aa15.22■□□□□ 0.03
NUP98-204ENST00000397004 ADAMTSL1Q8N6G6 1762 aa15.22■□□□□ 0.03
NUP98-204ENST00000397004 CES2O00748 559 aa15.22■□□□□ 0.03
NUP98-204ENST00000397004 GSTO1P78417 241 aa15.22■□□□□ 0.03
NUP98-204ENST00000397004 RNF187Q5TA31 235 aaPredicted RBP15.22■□□□□ 0.03
NUP98-204ENST00000397004 CRYGNQ8WXF5 182 aa15.22■□□□□ 0.03
NUP98-204ENST00000397004 SLC35C1Q96A29 364 aa15.22■□□□□ 0.03
NUP98-204ENST00000397004 JPH2Q9BR39 696 aaPredicted RBP15.22■□□□□ 0.03
NUP98-204ENST00000397004 BUD13Q9BRD0 619 aaKnown RBP eCLIP15.22■□□□□ 0.038e-7■■□□□ 12
NUP98-204ENST00000397004 REEP2Q9BRK0 252 aa15.22■□□□□ 0.03
NUP98-204ENST00000397004 ZHX3Q9H4I2 956 aa15.22■□□□□ 0.03
NUP98-204ENST00000397004 NOVA2Q9UNW9 492 aaKnown RBP15.22■□□□□ 0.03
NUP98-204ENST00000397004 KIF13BQ9NQT8 1826 aa15.21■□□□□ 0.03
NUP98-204ENST00000397004 SMCHD1A6NHR9 2005 aa15.21■□□□□ 0.03
NUP98-204ENST00000397004 TNNC1P63316 161 aa15.21■□□□□ 0.03
NUP98-204ENST00000397004 FAM182BQ5T319 152 aa15.21■□□□□ 0.03
NUP98-204ENST00000397004 LRIG3Q6UXM1 1119 aa15.21■□□□□ 0.03
NUP98-204ENST00000397004 SFR1Q86XK3 245 aa15.21■□□□□ 0.03
NUP98-204ENST00000397004 ZDHHC14Q8IZN3 488 aa15.21■□□□□ 0.03
NUP98-204ENST00000397004 LENG9Q96B70 501 aa15.21■□□□□ 0.03
NUP98-204ENST00000397004 BORCS6Q96GS4 357 aa15.21■□□□□ 0.03
NUP98-204ENST00000397004 HES6Q96HZ4 224 aa15.21■□□□□ 0.03
NUP98-204ENST00000397004 MXD3Q9BW11 206 aa15.21■□□□□ 0.03
NUP98-204ENST00000397004 GPR88Q9GZN0 384 aa15.21■□□□□ 0.03
NUP98-204ENST00000397004 DHX36Q9H2U1 1008 aaKnown RBP15.21■□□□□ 0.03
NUP98-204ENST00000397004 GAKO14976 1311 aa15.21■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms