RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 KRT80Q6KB66 452 aa11.02□□□□□ -0.65
LIMCH1-203ENST00000396595 DNAAF3Q8N9W5 541 aa11.02□□□□□ -0.65
LIMCH1-203ENST00000396595 PYROXD1Q8WU10 500 aa11.02□□□□□ -0.65
LIMCH1-203ENST00000396595 CALN1Q9BXU9 219 aa11.02□□□□□ -0.65
LIMCH1-203ENST00000396595 ORC6Q9Y5N6 252 aa11.02□□□□□ -0.65
LIMCH1-203ENST00000396595 LOC102724428A0A0B4J2F2 783 aa11.02□□□□□ -0.65
LIMCH1-203ENST00000396595 TMED10P49755 219 aaKnown RBP11.02□□□□□ -0.65
LIMCH1-203ENST00000396595 SIK1P57059 783 aa11.02□□□□□ -0.65
LIMCH1-203ENST00000396595 CAPRIN2Q6IMN6 1127 aaKnown RBP11.02□□□□□ -0.65
LIMCH1-203ENST00000396595 ZNF449Q6P9G9 518 aa11.02□□□□□ -0.65
LIMCH1-203ENST00000396595 PI16Q6UXB8 463 aa11.02□□□□□ -0.65
LIMCH1-203ENST00000396595 TMC4Q7Z404 712 aa11.02□□□□□ -0.65
LIMCH1-203ENST00000396595 DGKHQ86XP1 1220 aa11.02□□□□□ -0.65
LIMCH1-203ENST00000396595 EXOC8Q8IYI6 725 aa11.02□□□□□ -0.65
LIMCH1-203ENST00000396595 FMR1NBQ8N0W7 255 aaPredicted RBP11.02□□□□□ -0.65
LIMCH1-203ENST00000396595 PIP4K2CQ8TBX8 421 aa11.02□□□□□ -0.65
LIMCH1-203ENST00000396595 COA7Q96BR5 231 aa11.02□□□□□ -0.65
LIMCH1-203ENST00000396595 CCDC138Q96M89 665 aa11.02□□□□□ -0.65
LIMCH1-203ENST00000396595 PITPNM3Q9BZ71 974 aa11.02□□□□□ -0.65
LIMCH1-203ENST00000396595 NBPF3Q9H094 633 aa11.02□□□□□ -0.65
LIMCH1-203ENST00000396595 DDX28Q9NUL7 540 aaKnown RBP11.02□□□□□ -0.65
LIMCH1-203ENST00000396595 GDAQ9Y2T3 454 aa11.02□□□□□ -0.65
LIMCH1-203ENST00000396595 WDR19Q8NEZ3 1342 aa11.01□□□□□ -0.65
LIMCH1-203ENST00000396595 SYNJ2BP-COX16A0A087WUM0 186 aa11.01□□□□□ -0.65
LIMCH1-203ENST00000396595 MEIS1O00470 390 aa11.01□□□□□ -0.65
LIMCH1-203ENST00000396595 NR1H3Q13133 447 aa11.01□□□□□ -0.65
LIMCH1-203ENST00000396595 KCTD1Q719H9 257 aa11.01□□□□□ -0.65
LIMCH1-203ENST00000396595 CEP170P1Q96L14 293 aa11.01□□□□□ -0.65
LIMCH1-203ENST00000396595 ZNF408Q9H9D4 720 aa11.01□□□□□ -0.65
LIMCH1-203ENST00000396595 COX16Q9P0S2 106 aa11.01□□□□□ -0.65
LIMCH1-203ENST00000396595 SLC4A7Q9Y6M7 1214 aa11.01□□□□□ -0.65
LIMCH1-203ENST00000396595 ESYT2A0FGR8 921 aa11.01□□□□□ -0.65
LIMCH1-203ENST00000396595 BMP3P12645 472 aa11.01□□□□□ -0.65
LIMCH1-203ENST00000396595 PSMC1P62191 440 aaKnown RBP11.01□□□□□ -0.65
LIMCH1-203ENST00000396595 DYNLT1P63172 113 aa11.01□□□□□ -0.65
LIMCH1-203ENST00000396595 FLOT2Q14254 428 aa11.01□□□□□ -0.65
LIMCH1-203ENST00000396595 LLGL1Q15334 1064 aa11.01□□□□□ -0.65
LIMCH1-203ENST00000396595 SYT2Q8N9I0 419 aaPredicted RBP11.01□□□□□ -0.65
LIMCH1-203ENST00000396595 CCNYQ8ND76 341 aa11.01□□□□□ -0.65
LIMCH1-203ENST00000396595 FLAD1Q8NFF5 587 aa11.01□□□□□ -0.65
LIMCH1-203ENST00000396595 FGD4Q96M96 766 aa11.01□□□□□ -0.65
LIMCH1-203ENST00000396595 CXorf56Q9H5V9 222 aa11.01□□□□□ -0.65
LIMCH1-203ENST00000396595 SLC38A10Q9HBR0 1119 aa11.01□□□□□ -0.65
LIMCH1-203ENST00000396595 CDK12Q9NYV4 1490 aaPredicted RBP11.01□□□□□ -0.65
LIMCH1-203ENST00000396595 DEUP1Q05D60 604 aa11.01□□□□□ -0.65
LIMCH1-203ENST00000396595 CCDC15Q0P6D6 951 aa11.01□□□□□ -0.65
LIMCH1-203ENST00000396595 PALMO75781 387 aa11.01□□□□□ -0.65
LIMCH1-203ENST00000396595 ACSL3O95573 720 aa11.01□□□□□ -0.65
LIMCH1-203ENST00000396595 PLS3P13797 630 aa11.01□□□□□ -0.65
LIMCH1-203ENST00000396595 ART3Q13508 389 aa11.01□□□□□ -0.65
LIMCH1-203ENST00000396595 SURF1Q15526 300 aa11.01□□□□□ -0.65
LIMCH1-203ENST00000396595 TRIP13Q15645 432 aaPredicted RBP11.01□□□□□ -0.65
LIMCH1-203ENST00000396595 TRIML2Q8N7C3 387 aa11.01□□□□□ -0.65
LIMCH1-203ENST00000396595 KCTD6Q8NC69 237 aa11.01□□□□□ -0.65
LIMCH1-203ENST00000396595 RNF169Q8NCN4 708 aa11.01□□□□□ -0.65
LIMCH1-203ENST00000396595 UBAP1Q9NZ09 502 aa11.01□□□□□ -0.65
LIMCH1-203ENST00000396595 ZBTB1Q9Y2K1 713 aa11.01□□□□□ -0.65
LIMCH1-203ENST00000396595 IFRD2Q12894 506 aaPredicted RBP11□□□□□ -0.65
LIMCH1-203ENST00000396595 DCLK2Q8N568 766 aa11□□□□□ -0.65
LIMCH1-203ENST00000396595 SLAIN2Q9P270 581 aa11□□□□□ -0.65
LIMCH1-203ENST00000396595 GNGT2O14610 69 aa11□□□□□ -0.65
LIMCH1-203ENST00000396595 SORBS3O60504 671 aa11□□□□□ -0.65
LIMCH1-203ENST00000396595 KRT37O76014 449 aa11□□□□□ -0.65
LIMCH1-203ENST00000396595 CRKLP46109 303 aaKnown RBP11□□□□□ -0.65
LIMCH1-203ENST00000396595 GYS2P54840 703 aa11□□□□□ -0.65
LIMCH1-203ENST00000396595 MIS18BP1Q6P0N0 1132 aa11□□□□□ -0.65
LIMCH1-203ENST00000396595 USP17L2Q6R6M4 530 aa11□□□□□ -0.65
LIMCH1-203ENST00000396595 CCDC124Q96CT7 223 aaKnown RBP11□□□□□ -0.65
LIMCH1-203ENST00000396595 TRIM55Q9BYV6 548 aa11□□□□□ -0.65
LIMCH1-203ENST00000396595 ANGPTL3Q9Y5C1 460 aa11□□□□□ -0.65
LIMCH1-203ENST00000396595 INO80B-WBP1J3KQ70 363 aa11□□□□□ -0.65
LIMCH1-203ENST00000396595 PRPSAP2O60256 369 aa11□□□□□ -0.65
LIMCH1-203ENST00000396595 RCAN1P53805 252 aa11□□□□□ -0.65
LIMCH1-203ENST00000396595 NLRP10Q86W26 655 aa11□□□□□ -0.65
LIMCH1-203ENST00000396595 STRBPQ96SI9 672 aaKnown RBP11□□□□□ -0.65
LIMCH1-203ENST00000396595 INO80BQ9C086 356 aaPredicted RBP11□□□□□ -0.65
LIMCH1-203ENST00000396595 CNGB3Q9NQW8 809 aa11□□□□□ -0.65
LIMCH1-203ENST00000396595 CHCHD3Q9NX63 227 aaKnown RBP11□□□□□ -0.65
LIMCH1-203ENST00000396595 WDR91A4D1P6 747 aa11□□□□□ -0.65
LIMCH1-203ENST00000396595 TADA3O75528 432 aa11□□□□□ -0.65
LIMCH1-203ENST00000396595 SLC16A2P36021 539 aa11□□□□□ -0.65
LIMCH1-203ENST00000396595 UBXN2AP68543 259 aa11□□□□□ -0.65
LIMCH1-203ENST00000396595 CAV1Q03135 178 aa11□□□□□ -0.65
LIMCH1-203ENST00000396595 USPL1Q5W0Q7 1092 aa11□□□□□ -0.65
LIMCH1-203ENST00000396595 SESTD1Q86VW0 696 aa11□□□□□ -0.65
LIMCH1-203ENST00000396595 MAML1Q92585 1016 aa11□□□□□ -0.65
LIMCH1-203ENST00000396595 CNKSR1Q969H4 720 aa11□□□□□ -0.65
LIMCH1-203ENST00000396595 TRAIPQ9BWF2 469 aa11□□□□□ -0.65
LIMCH1-203ENST00000396595 UPF3AQ9H1J1 476 aaKnown RBP11□□□□□ -0.65
LIMCH1-203ENST00000396595 DHX36Q9H2U1 1008 aaKnown RBP11□□□□□ -0.65
LIMCH1-203ENST00000396595 PIH1D3Q9NQM4 214 aaKnown RBP11□□□□□ -0.65
LIMCH1-203ENST00000396595 RFX7Q2KHR2 1363 aa11□□□□□ -0.65
LIMCH1-203ENST00000396595 PNMA6FA0A0J9YX94 578 aa11□□□□□ -0.65
LIMCH1-203ENST00000396595 ZNF233A6NK53 670 aa11□□□□□ -0.65
LIMCH1-203ENST00000396595 ZBED1O96006 694 aa11□□□□□ -0.65
LIMCH1-203ENST00000396595 ABL1P00519 1130 aa11□□□□□ -0.65
LIMCH1-203ENST00000396595 SYDE2Q5VT97 1194 aa11□□□□□ -0.65
LIMCH1-203ENST00000396595 SPOPLQ6IQ16 392 aa11□□□□□ -0.65
LIMCH1-203ENST00000396595 CRLF3Q8IUI8 442 aa11□□□□□ -0.65
LIMCH1-203ENST00000396595 DDX17Q92841 729 aaKnown RBP11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms