RNA–Protein interactions for RNA: ENST00000389805.8

SQSTM1-202, Transcript of sequestosome 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SQSTM1, Length 2,986 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-202ENST00000389805 NAA25Q14CX7 972 aa19.37■□□□□ 0.69
SQSTM1-202ENST00000389805 SEPT2Q15019 361 aa19.37■□□□□ 0.69
SQSTM1-202ENST00000389805 PTPROQ16827 1216 aa19.37■□□□□ 0.69
SQSTM1-202ENST00000389805 CCDC155Q8N6L0 562 aa19.37■□□□□ 0.69
SQSTM1-202ENST00000389805 FAXDC2Q96IV6 333 aa19.37■□□□□ 0.69
SQSTM1-202ENST00000389805 FGFBP2Q9BYJ0 223 aa19.37■□□□□ 0.69
SQSTM1-202ENST00000389805 GDF3Q9NR23 364 aa19.37■□□□□ 0.69
SQSTM1-202ENST00000389805 PCDHA12Q9UN75 941 aa19.37■□□□□ 0.69
SQSTM1-202ENST00000389805 PRLRP16471 622 aa19.36■□□□□ 0.69
SQSTM1-202ENST00000389805 SLC1A4P43007 532 aa19.36■□□□□ 0.69
SQSTM1-202ENST00000389805 PDIA5Q14554 519 aa19.36■□□□□ 0.69
SQSTM1-202ENST00000389805 GPATCH4Q5T3I0 446 aaKnown RBP19.36■□□□□ 0.69
SQSTM1-202ENST00000389805 SIAH1Q8IUQ4 282 aa19.36■□□□□ 0.69
SQSTM1-202ENST00000389805 PAGR1Q9BTK6 254 aa19.36■□□□□ 0.69
SQSTM1-202ENST00000389805 STK17AQ9UEE5 414 aa19.36■□□□□ 0.69
SQSTM1-202ENST00000389805 FAM198AQ9UFP1 575 aa19.36■□□□□ 0.69
SQSTM1-202ENST00000389805 PCDHA1Q9Y5I3 950 aa19.36■□□□□ 0.69
SQSTM1-202ENST00000389805 FOCADQ5VW36 1801 aa19.36■□□□□ 0.69
SQSTM1-202ENST00000389805 GOLGA6L10A6NI86 522 aa19.36■□□□□ 0.69
SQSTM1-202ENST00000389805 E9PMD0 336 aa19.36■□□□□ 0.69
SQSTM1-202ENST00000389805 LRCH2Q5VUJ6 765 aa19.36■□□□□ 0.69
SQSTM1-202ENST00000389805 P2RX7Q99572 595 aaKnown RBP19.36■□□□□ 0.69
SQSTM1-202ENST00000389805 NPHP3-ACAD11A0A0J9YXS1 232 aa19.35■□□□□ 0.69
SQSTM1-202ENST00000389805 GMNCA6NCL1 334 aa19.35■□□□□ 0.69
SQSTM1-202ENST00000389805 EZRP15311 586 aaKnown RBP19.35■□□□□ 0.69
SQSTM1-202ENST00000389805 STAT3P40763 770 aa19.35■□□□□ 0.69
SQSTM1-202ENST00000389805 CERKLQ49MI3 558 aaPredicted RBP19.35■□□□□ 0.69
SQSTM1-202ENST00000389805 PPP4R3AQ6IN85 833 aa19.35■□□□□ 0.69
SQSTM1-202ENST00000389805 RAB34Q9BZG1 259 aa19.35■□□□□ 0.69
SQSTM1-202ENST00000389805 LRRC53A6NM62 1247 aa19.35■□□□□ 0.69
SQSTM1-202ENST00000389805 SATB1Q01826 763 aa19.35■□□□□ 0.69
SQSTM1-202ENST00000389805 ENOX2Q16206 610 aaKnown RBP19.35■□□□□ 0.69
SQSTM1-202ENST00000389805 NAIF1Q69YI7 327 aaPredicted RBP19.35■□□□□ 0.69
SQSTM1-202ENST00000389805 DDX42Q86XP3 938 aaKnown RBP eCLIP19.35■□□□□ 0.692e-11■□□□□ 10.2
SQSTM1-202ENST00000389805 RETREG2Q8NC44 543 aa19.35■□□□□ 0.69
SQSTM1-202ENST00000389805 RUBCNQ92622 972 aa19.35■□□□□ 0.69
SQSTM1-202ENST00000389805 MASTLQ96GX5 879 aa19.35■□□□□ 0.69
SQSTM1-202ENST00000389805 TMX4Q9H1E5 349 aaPredicted RBP19.35■□□□□ 0.69
SQSTM1-202ENST00000389805 PLAGL2Q9UPG8 496 aa19.35■□□□□ 0.69
SQSTM1-202ENST00000389805 LRRC37AA6NMS7 1700 aa19.35■□□□□ 0.69
SQSTM1-202ENST00000389805 HMGB1P1B2RPK0 211 aaPredicted RBP19.35■□□□□ 0.69
SQSTM1-202ENST00000389805 ORC2Q13416 577 aaPredicted RBP19.35■□□□□ 0.69
SQSTM1-202ENST00000389805 ANKRD20A8PQ5CZ79 823 aa19.35■□□□□ 0.69
SQSTM1-202ENST00000389805 SGSM3Q96HU1 749 aa19.35■□□□□ 0.69
SQSTM1-202ENST00000389805 APBA3O96018 575 aa19.34■□□□□ 0.69
SQSTM1-202ENST00000389805 GBP2P32456 591 aaPredicted RBP19.34■□□□□ 0.69
SQSTM1-202ENST00000389805 PDE6BP35913 854 aa19.34■□□□□ 0.69
SQSTM1-202ENST00000389805 JAG1P78504 1218 aa19.34■□□□□ 0.69
SQSTM1-202ENST00000389805 TDRD12Q587J7 1177 aaKnown RBP19.34■□□□□ 0.69
SQSTM1-202ENST00000389805 SLFN13Q68D06 897 aa19.34■□□□□ 0.69
SQSTM1-202ENST00000389805 FAM114A1Q8IWE2 563 aa19.34■□□□□ 0.69
SQSTM1-202ENST00000389805 ZDHHC15Q96MV8 337 aa19.34■□□□□ 0.69
SQSTM1-202ENST00000389805 KANSL2Q9H9L4 492 aa19.34■□□□□ 0.69
SQSTM1-202ENST00000389805 KIAA1024Q9UPX6 916 aa19.34■□□□□ 0.69
SQSTM1-202ENST00000389805 PVALEFA0A1B0GWK0 134 aa19.34■□□□□ 0.69
SQSTM1-202ENST00000389805 PHF20L1A8MW92 1017 aa19.34■□□□□ 0.69
SQSTM1-202ENST00000389805 RAD51CO43502 376 aa19.34■□□□□ 0.69
SQSTM1-202ENST00000389805 TNFRSF8P28908 595 aa19.34■□□□□ 0.69
SQSTM1-202ENST00000389805 SEMA3FQ13275 785 aa19.34■□□□□ 0.69
SQSTM1-202ENST00000389805 PLCB4Q15147 1175 aa19.34■□□□□ 0.69
SQSTM1-202ENST00000389805 ACCSLQ4AC99 568 aa19.34■□□□□ 0.69
SQSTM1-202ENST00000389805 TMEM119Q4V9L6 283 aa19.34■□□□□ 0.69
SQSTM1-202ENST00000389805 CHADLQ6NUI6 762 aa19.34■□□□□ 0.69
SQSTM1-202ENST00000389805 DNAJC19Q96DA6 116 aa19.34■□□□□ 0.69
SQSTM1-202ENST00000389805 SEC16BQ96JE7 1060 aa19.34■□□□□ 0.69
SQSTM1-202ENST00000389805 TACO1Q9BSH4 297 aaKnown RBP19.34■□□□□ 0.69
SQSTM1-202ENST00000389805 NDST4Q9H3R1 872 aa19.34■□□□□ 0.69
SQSTM1-202ENST00000389805 MYH7BA7E2Y1 1941 aa19.34■□□□□ 0.69
SQSTM1-202ENST00000389805 SCTRP47872 440 aa19.33■□□□□ 0.69
SQSTM1-202ENST00000389805 USH1GQ495M9 461 aa19.33■□□□□ 0.69
SQSTM1-202ENST00000389805 NOX5Q96PH1 765 aa19.33■□□□□ 0.69
SQSTM1-202ENST00000389805 BAIAP2L1Q9UHR4 511 aa19.33■□□□□ 0.69
SQSTM1-202ENST00000389805 ATF5Q9Y2D1 282 aaPredicted RBP19.33■□□□□ 0.69
SQSTM1-202ENST00000389805 POTEB3A0JP26 581 aa19.33■□□□□ 0.68
SQSTM1-202ENST00000389805 POTECB2RU33 542 aa19.33■□□□□ 0.68
SQSTM1-202ENST00000389805 GCOM1H8Y6P7 765 aaPredicted RBP19.33■□□□□ 0.68
SQSTM1-202ENST00000389805 PALMO75781 387 aa19.33■□□□□ 0.68
SQSTM1-202ENST00000389805 MYZAPP0CAP1 466 aa19.33■□□□□ 0.68
SQSTM1-202ENST00000389805 CHRNA5P30532 468 aa19.33■□□□□ 0.68
SQSTM1-202ENST00000389805 EHHADHQ08426 723 aa19.33■□□□□ 0.68
SQSTM1-202ENST00000389805 CDC37Q16543 378 aaPredicted RBP19.33■□□□□ 0.68
SQSTM1-202ENST00000389805 VWA3BQ502W6 1294 aa19.33■□□□□ 0.68
SQSTM1-202ENST00000389805 POTEBQ6S5H4 581 aa19.33■□□□□ 0.68
SQSTM1-202ENST00000389805 PODNQ7Z5L7 613 aa19.33■□□□□ 0.68
SQSTM1-202ENST00000389805 AKT1S1Q96B36 256 aa19.33■□□□□ 0.68
SQSTM1-202ENST00000389805 TMBIM4Q9HC24 238 aa19.33■□□□□ 0.68
SQSTM1-202ENST00000389805 UTRNP46939 3433 aa19.33■□□□□ 0.68
SQSTM1-202ENST00000389805 TDRD3Q9H7E2 651 aaKnown RBP19.32■□□□□ 0.68
SQSTM1-202ENST00000389805 CNOT8Q9UFF9 292 aaKnown RBP19.32■□□□□ 0.68
SQSTM1-202ENST00000389805 DCDC2CA8MYV0 355 aa19.32■□□□□ 0.68
SQSTM1-202ENST00000389805 COASYQ13057 564 aa19.32■□□□□ 0.68
SQSTM1-202ENST00000389805 GLE1Q53GS7 698 aaKnown RBP19.32■□□□□ 0.68
SQSTM1-202ENST00000389805 NELFCDQ8IXH7 590 aa19.32■□□□□ 0.68
SQSTM1-202ENST00000389805 GUF1Q8N442 669 aaKnown RBP19.32■□□□□ 0.68
SQSTM1-202ENST00000389805 ERGIC2Q96RQ1 377 aa19.32■□□□□ 0.68
SQSTM1-202ENST00000389805 ACTR5Q9H9F9 607 aaPredicted RBP19.32■□□□□ 0.68
SQSTM1-202ENST00000389805 NLRC4Q9NPP4 1024 aa19.32■□□□□ 0.68
SQSTM1-202ENST00000389805 KCNG1Q9UIX4 513 aa19.32■□□□□ 0.68
SQSTM1-202ENST00000389805 MYH4Q9Y623 1939 aa19.32■□□□□ 0.68
SQSTM1-202ENST00000389805 ECE2O60344 883 aa19.32■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms