RNA–Protein interactions for RNA: ENST00000368440.4

SMPDL3A-201, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPDL3A, Length 1,851 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-201ENST00000368440 RUFY4Q6ZNE9 571 aa16.97■□□□□ 0.31
SMPDL3A-201ENST00000368440 CKAP2LQ8IYA6 745 aa16.97■□□□□ 0.31
SMPDL3A-201ENST00000368440 EIF4ENIF1Q9NRA8 985 aaKnown RBP16.97■□□□□ 0.31
SMPDL3A-201ENST00000368440 PCDHA12Q9UN75 941 aa16.97■□□□□ 0.31
SMPDL3A-201ENST00000368440 MTMR6Q9Y217 621 aa16.97■□□□□ 0.31
SMPDL3A-201ENST00000368440 POTEMA6NI47 508 aa16.96■□□□□ 0.31
SMPDL3A-201ENST00000368440 ZBTB42B2RXF5 422 aa16.96■□□□□ 0.31
SMPDL3A-201ENST00000368440 OR52Z1P0C646 297 aa16.96■□□□□ 0.31
SMPDL3A-201ENST00000368440 PRKCEQ02156 737 aa16.96■□□□□ 0.31
SMPDL3A-201ENST00000368440 RESTQ13127 1097 aa16.96■□□□□ 0.31
SMPDL3A-201ENST00000368440 WRAP73Q9P2S5 460 aaPredicted RBP16.96■□□□□ 0.31
SMPDL3A-201ENST00000368440 TUBE1Q9UJT0 475 aa16.96■□□□□ 0.31
SMPDL3A-201ENST00000368440 ARID2Q68CP9 1835 aa16.96■□□□□ 0.3
SMPDL3A-201ENST00000368440 MBLAC1A4D2B0 266 aaPredicted RBP16.95■□□□□ 0.3
SMPDL3A-201ENST00000368440 TMEM150BA6NC51 233 aa16.95■□□□□ 0.3
SMPDL3A-201ENST00000368440 PITPNM1O00562 1244 aa16.95■□□□□ 0.3
SMPDL3A-201ENST00000368440 STX6O43752 255 aa16.95■□□□□ 0.3
SMPDL3A-201ENST00000368440 HBP1O60381 514 aa16.95■□□□□ 0.3
SMPDL3A-201ENST00000368440 OATP04181 439 aa16.95■□□□□ 0.3
SMPDL3A-201ENST00000368440 GNAT1P11488 350 aa16.95■□□□□ 0.3
SMPDL3A-201ENST00000368440 CKBP12277 381 aa16.95■□□□□ 0.3
SMPDL3A-201ENST00000368440 FPGSQ05932 587 aa16.95■□□□□ 0.3
SMPDL3A-201ENST00000368440 RILPL1Q5EBL4 403 aa16.95■□□□□ 0.3
SMPDL3A-201ENST00000368440 VWCEQ96DN2 955 aa16.95■□□□□ 0.3
SMPDL3A-201ENST00000368440 UBE2OQ9C0C9 1292 aaKnown RBP16.95■□□□□ 0.3
SMPDL3A-201ENST00000368440 RGL1Q9NZL6 768 aa16.95■□□□□ 0.3
SMPDL3A-201ENST00000368440 STBD1O95210 358 aa16.95■□□□□ 0.3
SMPDL3A-201ENST00000368440 BMP8BP34820 402 aa16.95■□□□□ 0.3
SMPDL3A-201ENST00000368440 RBL2Q08999 1139 aa16.95■□□□□ 0.3
SMPDL3A-201ENST00000368440 PTGDRQ13258 359 aa16.95■□□□□ 0.3
SMPDL3A-201ENST00000368440 BFSP2Q13515 415 aa16.95■□□□□ 0.3
SMPDL3A-201ENST00000368440 EPHA7Q15375 998 aa16.95■□□□□ 0.3
SMPDL3A-201ENST00000368440 TRAF7Q6Q0C0 670 aa16.95■□□□□ 0.3
SMPDL3A-201ENST00000368440 CAGE1Q8TC20 777 aa16.95■□□□□ 0.3
SMPDL3A-201ENST00000368440 BBXQ8WY36 941 aaPredicted RBP16.95■□□□□ 0.3
SMPDL3A-201ENST00000368440 DYDC2Q96IM9 177 aa16.95■□□□□ 0.3
SMPDL3A-201ENST00000368440 RRN3P2A6NIE6 340 aa16.94■□□□□ 0.3
SMPDL3A-201ENST00000368440 IQCF3P0C7M6 154 aa16.94■□□□□ 0.3
SMPDL3A-201ENST00000368440 ACRP10323 421 aa16.94■□□□□ 0.3
SMPDL3A-201ENST00000368440 THPOP40225 353 aa16.94■□□□□ 0.3
SMPDL3A-201ENST00000368440 TECP42680 631 aa16.94■□□□□ 0.3
SMPDL3A-201ENST00000368440 CYP4A11Q02928 519 aa16.94■□□□□ 0.3
SMPDL3A-201ENST00000368440 ZNF618Q5T7W0 954 aa16.94■□□□□ 0.3
SMPDL3A-201ENST00000368440 FAM173BQ6P4H8 233 aa16.94■□□□□ 0.3
SMPDL3A-201ENST00000368440 C16orf59Q7L2K0 433 aa16.94■□□□□ 0.3
SMPDL3A-201ENST00000368440 BRAPQ7Z569 592 aa16.94■□□□□ 0.3
SMPDL3A-201ENST00000368440 TMEM199Q8N511 208 aa16.94■□□□□ 0.3
SMPDL3A-201ENST00000368440 CCDC155Q8N6L0 562 aa16.94■□□□□ 0.3
SMPDL3A-201ENST00000368440 EVPLQ92817 2033 aa16.94■□□□□ 0.3
SMPDL3A-201ENST00000368440 COL1A2P08123 1366 aa16.94■□□□□ 0.3
SMPDL3A-201ENST00000368440 C9orf50Q5SZB4 431 aa16.93■□□□□ 0.3
SMPDL3A-201ENST00000368440 MTHFD1LQ6UB35 978 aa16.93■□□□□ 0.3
SMPDL3A-201ENST00000368440 LRRC8DQ7L1W4 858 aa16.93■□□□□ 0.3
SMPDL3A-201ENST00000368440 RETREG2Q8NC44 543 aa16.93■□□□□ 0.3
SMPDL3A-201ENST00000368440 EIF2AK1Q9BQI3 630 aaKnown RBP16.93■□□□□ 0.3
SMPDL3A-201ENST00000368440 SH2D3AQ9BRG2 576 aa16.93■□□□□ 0.3
SMPDL3A-201ENST00000368440 LXNQ9BS40 222 aa16.93■□□□□ 0.3
SMPDL3A-201ENST00000368440 P4HBP07237 508 aaKnown RBP16.93■□□□□ 0.3
SMPDL3A-201ENST00000368440 CTSHP09668 335 aa16.93■□□□□ 0.3
SMPDL3A-201ENST00000368440 SELPP16109 830 aa16.93■□□□□ 0.3
SMPDL3A-201ENST00000368440 QARSP47897 775 aaKnown RBP16.93■□□□□ 0.3
SMPDL3A-201ENST00000368440 PSMC5P62195 406 aa16.93■□□□□ 0.3
SMPDL3A-201ENST00000368440 CTTNQ14247 550 aaKnown RBP16.93■□□□□ 0.3
SMPDL3A-201ENST00000368440 GPNMBQ14956 572 aa16.93■□□□□ 0.3
SMPDL3A-201ENST00000368440 IL17AQ16552 155 aa16.93■□□□□ 0.3
SMPDL3A-201ENST00000368440 ZNF484Q5JVG2 852 aa16.93■□□□□ 0.3
SMPDL3A-201ENST00000368440 DNAJB3Q8WWF6 145 aa16.93■□□□□ 0.3
SMPDL3A-201ENST00000368440 FAM167AQ96KS9 214 aa16.93■□□□□ 0.3
SMPDL3A-201ENST00000368440 FTOQ9C0B1 505 aaKnown RBP eCLIP16.93■□□□□ 0.3
SMPDL3A-201ENST00000368440 SEPT9Q9UHD8 586 aaPredicted RBP16.93■□□□□ 0.3
SMPDL3A-201ENST00000368440 C22orf31O95567 290 aa16.92■□□□□ 0.3
SMPDL3A-201ENST00000368440 KLRC1P26715 233 aa16.92■□□□□ 0.3
SMPDL3A-201ENST00000368440 PPIGQ13427 754 aaKnown RBP eCLIP16.92■□□□□ 0.3
SMPDL3A-201ENST00000368440 PKP1Q13835 747 aa16.92■□□□□ 0.3
SMPDL3A-201ENST00000368440 MBTPS1Q14703 1052 aa16.92■□□□□ 0.3
SMPDL3A-201ENST00000368440 DEFB128Q7Z7B8 93 aa16.92■□□□□ 0.3
SMPDL3A-201ENST00000368440 TNPO1Q92973 898 aaKnown RBP16.92■□□□□ 0.3
SMPDL3A-201ENST00000368440 OSBPL7Q9BZF2 842 aa16.92■□□□□ 0.3
SMPDL3A-201ENST00000368440 FAM49AQ9H0Q0 323 aaPredicted RBP16.92■□□□□ 0.3
SMPDL3A-201ENST00000368440 LOXHD1Q8IVV2 1947 aa16.92■□□□□ 0.3
SMPDL3A-201ENST00000368440 TET1Q8NFU7 2136 aa16.92■□□□□ 0.3
SMPDL3A-201ENST00000368440 SLITRK3O94933 977 aa16.91■□□□□ 0.3
SMPDL3A-201ENST00000368440 ATP2C1P98194 919 aaPredicted RBP16.91■□□□□ 0.3
SMPDL3A-201ENST00000368440 SHHQ15465 462 aa16.91■□□□□ 0.3
SMPDL3A-201ENST00000368440 XKR3Q5GH77 459 aa16.91■□□□□ 0.3
SMPDL3A-201ENST00000368440 FOXD4L5Q5VV16 416 aaPredicted RBP16.91■□□□□ 0.3
SMPDL3A-201ENST00000368440 PLA2G4FQ68DD2 849 aa16.91■□□□□ 0.3
SMPDL3A-201ENST00000368440 ANO5Q75V66 913 aa16.91■□□□□ 0.3
SMPDL3A-201ENST00000368440 FOXD4L4Q8WXT5 416 aaPredicted RBP16.91■□□□□ 0.3
SMPDL3A-201ENST00000368440 HSD17B14Q9BPX1 270 aa16.91■□□□□ 0.3
SMPDL3A-201ENST00000368440 BUD13Q9BRD0 619 aaKnown RBP eCLIP16.91■□□□□ 0.3
SMPDL3A-201ENST00000368440 IL23AQ9NPF7 189 aa16.91■□□□□ 0.3
SMPDL3A-201ENST00000368440 NRBP2Q9NSY0 501 aa16.91■□□□□ 0.3
SMPDL3A-201ENST00000368440 PCDHA2Q9Y5H9 948 aa16.91■□□□□ 0.3
SMPDL3A-201ENST00000368440 ZBTB39O15060 712 aa16.9■□□□□ 0.3
SMPDL3A-201ENST00000368440 NBNO60934 754 aa16.9■□□□□ 0.3
SMPDL3A-201ENST00000368440 FXR2P51116 673 aaKnown RBP eCLIP16.9■□□□□ 0.3
SMPDL3A-201ENST00000368440 TARBP2Q15633 366 aaKnown RBP16.9■□□□□ 0.3
SMPDL3A-201ENST00000368440 MTERF2Q49AM1 385 aa16.9■□□□□ 0.3
SMPDL3A-201ENST00000368440 TAF2Q6P1X5 1199 aa16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms