RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 ZNF579Q8NAF0 562 aaKnown RBP10.17□□□□□ -0.78
UPF2-202ENST00000357604 PQBP1O60828 265 aaKnown RBP10.17□□□□□ -0.78
UPF2-202ENST00000357604 CAVIN2O95810 425 aa10.17□□□□□ -0.78
UPF2-202ENST00000357604 TNNC2P02585 160 aa10.17□□□□□ -0.78
UPF2-202ENST00000357604 STX1AQ16623 288 aa10.17□□□□□ -0.78
UPF2-202ENST00000357604 CACTINQ8WUQ7 758 aaKnown RBP10.17□□□□□ -0.78
UPF2-202ENST00000357604 MSRAQ9UJ68 235 aa10.17□□□□□ -0.78
UPF2-202ENST00000357604 ZNF214Q9UL59 606 aaPredicted RBP10.17□□□□□ -0.78
UPF2-202ENST00000357604 PCDHB7Q9Y5E2 793 aa10.17□□□□□ -0.78
UPF2-202ENST00000357604 LARGE1O95461 756 aa10.17□□□□□ -0.78
UPF2-202ENST00000357604 PRKCEQ02156 737 aa10.17□□□□□ -0.78
UPF2-202ENST00000357604 CYP4A11Q02928 519 aa10.17□□□□□ -0.78
UPF2-202ENST00000357604 PSMD2Q13200 908 aa10.17□□□□□ -0.78
UPF2-202ENST00000357604 ADALQ6DHV7 355 aa10.17□□□□□ -0.78
UPF2-202ENST00000357604 PLPPR4Q7Z2D5 763 aa10.17□□□□□ -0.78
UPF2-202ENST00000357604 PLIN2Q99541 437 aa10.17□□□□□ -0.78
UPF2-202ENST00000357604 POLR3FQ9H1D9 316 aaPredicted RBP10.17□□□□□ -0.78
UPF2-202ENST00000357604 SUCLA2Q9P2R7 463 aaPredicted RBP10.17□□□□□ -0.78
UPF2-202ENST00000357604 MTMR6Q9Y217 621 aa10.17□□□□□ -0.78
UPF2-202ENST00000357604 NRCAMQ92823 1304 aa10.16□□□□□ -0.78
UPF2-202ENST00000357604 RPS6KA5O75582 802 aa10.16□□□□□ -0.78
UPF2-202ENST00000357604 THPOP40225 353 aa10.16□□□□□ -0.78
UPF2-202ENST00000357604 LY6KQ17RY6 165 aa10.16□□□□□ -0.78
UPF2-202ENST00000357604 MAEAQ7L5Y9 396 aa10.16□□□□□ -0.78
UPF2-202ENST00000357604 FAM178BQ8IXR5 827 aa10.16□□□□□ -0.78
UPF2-202ENST00000357604 FAM133AQ8N9E0 248 aa10.16□□□□□ -0.78
UPF2-202ENST00000357604 PANK2Q9BZ23 570 aa10.16□□□□□ -0.78
UPF2-202ENST00000357604 TSPY26PQ9H489 355 aa10.16□□□□□ -0.78
UPF2-202ENST00000357604 INO80B-WBP1J3KQ70 363 aa10.16□□□□□ -0.78
UPF2-202ENST00000357604 IPO7O95373 1038 aaKnown RBP10.16□□□□□ -0.78
UPF2-202ENST00000357604 TDP2O95551 362 aa10.16□□□□□ -0.78
UPF2-202ENST00000357604 GNA14O95837 355 aa10.16□□□□□ -0.78
UPF2-202ENST00000357604 CCDC172P0C7W6 258 aa10.16□□□□□ -0.78
UPF2-202ENST00000357604 U2AF2P26368 475 aaKnown RBP eCLIP10.16□□□□□ -0.78
UPF2-202ENST00000357604 FXR2P51116 673 aaKnown RBP eCLIP10.16□□□□□ -0.784e-9■■■□□ 18.8
UPF2-202ENST00000357604 RAB27AP51159 221 aa10.16□□□□□ -0.78
UPF2-202ENST00000357604 TRPC3Q13507 836 aa10.16□□□□□ -0.78
UPF2-202ENST00000357604 KIAA0753Q2KHM9 967 aa10.16□□□□□ -0.78
UPF2-202ENST00000357604 SLC5A5Q92911 643 aa10.16□□□□□ -0.78
UPF2-202ENST00000357604 FAM212AQ96EL1 285 aa10.16□□□□□ -0.78
UPF2-202ENST00000357604 CNMDO75829 334 aa10.16□□□□□ -0.78
UPF2-202ENST00000357604 LDHAP00338 332 aaKnown RBP10.16□□□□□ -0.78
UPF2-202ENST00000357604 PLA2G4BP0C869 781 aa10.16□□□□□ -0.78
UPF2-202ENST00000357604 ATN1P54259 1190 aaPredicted RBP10.16□□□□□ -0.78
UPF2-202ENST00000357604 PCBP1Q15365 356 aaKnown RBP eCLIP10.16□□□□□ -0.78
UPF2-202ENST00000357604 TAF12Q16514 161 aa10.16□□□□□ -0.78
UPF2-202ENST00000357604 SHROOM1Q2M3G4 852 aaPredicted RBP10.16□□□□□ -0.78
UPF2-202ENST00000357604 PADI6Q6TGC4 694 aa10.16□□□□□ -0.78
UPF2-202ENST00000357604 RNF169Q8NCN4 708 aa10.16□□□□□ -0.78
UPF2-202ENST00000357604 SYMPKQ92797 1274 aaKnown RBP10.16□□□□□ -0.78
UPF2-202ENST00000357604 CCDC94Q9BW85 323 aaPredicted RBP10.16□□□□□ -0.78
UPF2-202ENST00000357604 UNC45AQ9H3U1 944 aa10.16□□□□□ -0.78
UPF2-202ENST00000357604 PARP2Q9UGN5 583 aa10.16□□□□□ -0.78
UPF2-202ENST00000357604 A0A1B0GUL6 1792 aa10.16□□□□□ -0.78
UPF2-202ENST00000357604 KIAA0391O15091 583 aaKnown RBP10.16□□□□□ -0.78
UPF2-202ENST00000357604 EYA4O95677 639 aa10.16□□□□□ -0.78
UPF2-202ENST00000357604 MMP3P08254 477 aa10.16□□□□□ -0.78
UPF2-202ENST00000357604 HERC4Q5GLZ8 1057 aaPredicted RBP10.16□□□□□ -0.78
UPF2-202ENST00000357604 UBN1Q9NPG3 1134 aa10.16□□□□□ -0.78
UPF2-202ENST00000357604 SEL1LQ9UBV2 794 aa10.16□□□□□ -0.78
UPF2-202ENST00000357604 TUBE1Q9UJT0 475 aa10.16□□□□□ -0.78
UPF2-202ENST00000357604 ADAMTS5Q9UNA0 930 aa10.16□□□□□ -0.78
UPF2-202ENST00000357604 TRPV2Q9Y5S1 764 aa10.16□□□□□ -0.78
UPF2-202ENST00000357604 MSH4O15457 936 aa10.15□□□□□ -0.78
UPF2-202ENST00000357604 GTPBP6O43824 516 aaPredicted RBP10.15□□□□□ -0.78
UPF2-202ENST00000357604 GRIK4Q16099 956 aa10.15□□□□□ -0.78
UPF2-202ENST00000357604 MAMDC4Q6UXC1 1216 aa10.15□□□□□ -0.78
UPF2-202ENST00000357604 METTL23Q86XA0 190 aa10.15□□□□□ -0.78
UPF2-202ENST00000357604 ATP8B4Q8TF62 1192 aa10.15□□□□□ -0.78
UPF2-202ENST00000357604 CLEC4DQ8WXI8 215 aa10.15□□□□□ -0.78
UPF2-202ENST00000357604 MTMR8Q96EF0 704 aa10.15□□□□□ -0.78
UPF2-202ENST00000357604 TOPORSQ9NS56 1045 aaPredicted RBP10.15□□□□□ -0.78
UPF2-202ENST00000357604 PSME4Q14997 1843 aa10.15□□□□□ -0.78
UPF2-202ENST00000357604 A0A1W2PQ27 194 aa10.15□□□□□ -0.78
UPF2-202ENST00000357604 A0A1W2PQ64 194 aa10.15□□□□□ -0.78
UPF2-202ENST00000357604 A0A1W2PQD8 194 aa10.15□□□□□ -0.78
UPF2-202ENST00000357604 OFD1O75665 1012 aa10.15□□□□□ -0.78
UPF2-202ENST00000357604 LGALS2P05162 132 aa10.15□□□□□ -0.78
UPF2-202ENST00000357604 CMA1P23946 247 aa10.15□□□□□ -0.78
UPF2-202ENST00000357604 WDR44Q5JSH3 913 aa10.15□□□□□ -0.78
UPF2-202ENST00000357604 OXER1Q8TDS5 423 aa10.15□□□□□ -0.78
UPF2-202ENST00000357604 RAD54LQ92698 747 aa10.15□□□□□ -0.78
UPF2-202ENST00000357604 UIMC1Q96RL1 719 aa10.15□□□□□ -0.78
UPF2-202ENST00000357604 PARVGQ9HBI0 331 aa10.15□□□□□ -0.78
UPF2-202ENST00000357604 CGNQ9P2M7 1197 aaKnown RBP10.15□□□□□ -0.78
UPF2-202ENST00000357604 ODF2LQ9ULJ1 636 aa10.15□□□□□ -0.78
UPF2-202ENST00000357604 ATP2C1P98194 919 aaPredicted RBP10.15□□□□□ -0.78
UPF2-202ENST00000357604 SEMA3FQ13275 785 aa10.15□□□□□ -0.78
UPF2-202ENST00000357604 EMC2Q15006 297 aa10.15□□□□□ -0.78
UPF2-202ENST00000357604 MAPK6Q16659 721 aa10.15□□□□□ -0.78
UPF2-202ENST00000357604 RHPN2Q8IUC4 686 aa10.15□□□□□ -0.78
UPF2-202ENST00000357604 ATP8B3O60423 1300 aa10.15□□□□□ -0.79
UPF2-202ENST00000357604 ECM29Q5VYK3 1845 aa10.15□□□□□ -0.79
UPF2-202ENST00000357604 COL4A1P02462 1669 aa10.15□□□□□ -0.79
UPF2-202ENST00000357604 H3BRB1 525 aa10.15□□□□□ -0.79
UPF2-202ENST00000357604 PFKMP08237 780 aa10.15□□□□□ -0.79
UPF2-202ENST00000357604 UBA1P22314 1058 aaKnown RBP10.15□□□□□ -0.79
UPF2-202ENST00000357604 SPAG1Q07617 926 aa10.15□□□□□ -0.79
UPF2-202ENST00000357604 CACNB2Q08289 660 aaPredicted RBP10.15□□□□□ -0.79
UPF2-202ENST00000357604 DCAF4L1Q3SXM0 396 aa10.15□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms