RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 HNRNPLLQ8WVV9 542 aaKnown RBP14.18□□□□□ -0.14
CLK3-201ENST00000345005 CYP39A1Q9NYL5 469 aa14.18□□□□□ -0.14
CLK3-201ENST00000345005 MAGEC2Q9UBF1 373 aaPredicted RBP14.18□□□□□ -0.14
CLK3-201ENST00000345005 FRMD3A2A2Y4 597 aa14.17□□□□□ -0.14
CLK3-201ENST00000345005 DHX15O43143 795 aaKnown RBP14.17□□□□□ -0.14
CLK3-201ENST00000345005 ERLIN1O75477 346 aa14.17□□□□□ -0.14
CLK3-201ENST00000345005 STAM2O75886 525 aa14.17□□□□□ -0.14
CLK3-201ENST00000345005 CCDC175P0C221 793 aa14.17□□□□□ -0.14
CLK3-201ENST00000345005 PMS1P54277 932 aaKnown RBP14.17□□□□□ -0.14
CLK3-201ENST00000345005 KRT31Q15323 416 aa14.17□□□□□ -0.14
CLK3-201ENST00000345005 LDLRAD1Q5T700 205 aa14.17□□□□□ -0.14
CLK3-201ENST00000345005 ANKRD40Q6AI12 368 aa14.17□□□□□ -0.14
CLK3-201ENST00000345005 CC2D1AQ6P1N0 951 aaPredicted RBP14.17□□□□□ -0.14
CLK3-201ENST00000345005 FOXR2Q6PJQ5 311 aa14.17□□□□□ -0.14
CLK3-201ENST00000345005 NLRX1Q86UT6 975 aa14.17□□□□□ -0.14
CLK3-201ENST00000345005 RIOX2Q8IUF8 465 aa14.17□□□□□ -0.14
CLK3-201ENST00000345005 TMEM139Q8IV31 216 aa14.17□□□□□ -0.14
CLK3-201ENST00000345005 MYOCDQ8IZQ8 938 aa14.17□□□□□ -0.14
CLK3-201ENST00000345005 CSGALNACT2Q8N6G5 542 aa14.17□□□□□ -0.14
CLK3-201ENST00000345005 HPS3Q969F9 1004 aa14.17□□□□□ -0.14
CLK3-201ENST00000345005 OPTNQ96CV9 577 aa14.17□□□□□ -0.14
CLK3-201ENST00000345005 CCDC51Q96ER9 411 aa14.17□□□□□ -0.14
CLK3-201ENST00000345005 DUSP9Q99956 384 aaKnown RBP14.17□□□□□ -0.14
CLK3-201ENST00000345005 BHMT2Q9H2M3 363 aa14.17□□□□□ -0.14
CLK3-201ENST00000345005 A1CFQ9NQ94 594 aaKnown RBP14.17□□□□□ -0.14
CLK3-201ENST00000345005 FGFR1OPO95684 399 aaKnown RBP14.16□□□□□ -0.14
CLK3-201ENST00000345005 LRRC63Q05C16 580 aa14.16□□□□□ -0.14
CLK3-201ENST00000345005 GIT2Q14161 759 aa14.16□□□□□ -0.14
CLK3-201ENST00000345005 HERC4Q5GLZ8 1057 aaPredicted RBP14.16□□□□□ -0.14
CLK3-201ENST00000345005 EXOC4Q96A65 974 aa14.16□□□□□ -0.14
CLK3-201ENST00000345005 GPRASP2Q96D09 838 aa14.16□□□□□ -0.14
CLK3-201ENST00000345005 GBP3Q9H0R5 595 aa14.16□□□□□ -0.14
CLK3-201ENST00000345005 YY1AP1Q9H869 796 aa14.16□□□□□ -0.14
CLK3-201ENST00000345005 EFCC1Q9HA90 598 aa14.16□□□□□ -0.14
CLK3-201ENST00000345005 AGTPBP1Q9UPW5 1226 aa14.16□□□□□ -0.14
CLK3-201ENST00000345005 ZNFX1Q9P2E3 1918 aaKnown RBP14.16□□□□□ -0.14
CLK3-201ENST00000345005 PFASO15067 1338 aa14.16□□□□□ -0.14
CLK3-201ENST00000345005 NPHP3-ACAD11A0A0J9YXS1 232 aa14.15□□□□□ -0.14
CLK3-201ENST00000345005 DDX39AO00148 427 aaKnown RBP14.15□□□□□ -0.14
CLK3-201ENST00000345005 N4BP3O15049 544 aa14.15□□□□□ -0.14
CLK3-201ENST00000345005 EIF3JO75822 258 aaKnown RBP14.15□□□□□ -0.14
CLK3-201ENST00000345005 P4HBP07237 508 aaKnown RBP14.15□□□□□ -0.14
CLK3-201ENST00000345005 COPB1P53618 953 aaKnown RBP14.15□□□□□ -0.14
CLK3-201ENST00000345005 ITGB3BPQ13352 177 aaPredicted RBP14.15□□□□□ -0.14
CLK3-201ENST00000345005 SMC1AQ14683 1233 aaKnown RBP14.15□□□□□ -0.14
CLK3-201ENST00000345005 IRF2BP1Q8IU81 584 aa14.15□□□□□ -0.14
CLK3-201ENST00000345005 DNERQ8NFT8 737 aa14.15□□□□□ -0.14
CLK3-201ENST00000345005 SLC10A4Q96EP9 437 aa14.15□□□□□ -0.14
CLK3-201ENST00000345005 PURBQ96QR8 312 aaKnown RBP14.15□□□□□ -0.14
CLK3-201ENST00000345005 IWS1Q96ST2 819 aa14.15□□□□□ -0.14
CLK3-201ENST00000345005 TSG101Q99816 390 aa14.15□□□□□ -0.14
CLK3-201ENST00000345005 ASCC2Q9H1I8 757 aaPredicted RBP14.15□□□□□ -0.14
CLK3-201ENST00000345005 SEMA6BQ9H3T3 888 aa14.15□□□□□ -0.14
CLK3-201ENST00000345005 PKD2L1Q9P0L9 805 aa14.15□□□□□ -0.14
CLK3-201ENST00000345005 TCEAL9Q9UHQ7 104 aa14.15□□□□□ -0.14
CLK3-201ENST00000345005 CEP350Q5VT06 3117 aa14.15□□□□□ -0.14
CLK3-201ENST00000345005 MYH9P35579 1960 aaKnown RBP14.15□□□□□ -0.14
CLK3-201ENST00000345005 DOCK5Q9H7D0 1870 aa14.15□□□□□ -0.14
CLK3-201ENST00000345005 TESPA1A2RU30 521 aaPredicted RBP14.15□□□□□ -0.14
CLK3-201ENST00000345005 AKR1B15C9JRZ8 316 aaPredicted RBP14.15□□□□□ -0.14
CLK3-201ENST00000345005 OSBPP22059 807 aa14.15□□□□□ -0.14
CLK3-201ENST00000345005 PIGOQ8TEQ8 1089 aa14.15□□□□□ -0.14
CLK3-201ENST00000345005 CDHR1Q96JP9 859 aa14.15□□□□□ -0.14
CLK3-201ENST00000345005 SPATC1LQ9H0A9 340 aa14.15□□□□□ -0.14
CLK3-201ENST00000345005 KCND2Q9NZV8 630 aa14.15□□□□□ -0.14
CLK3-201ENST00000345005 BTBD7Q9P203 1132 aa14.15□□□□□ -0.14
CLK3-201ENST00000345005 PCDHA2Q9Y5H9 948 aa14.15□□□□□ -0.14
CLK3-201ENST00000345005 TEX33O43247 280 aa14.14□□□□□ -0.15
CLK3-201ENST00000345005 KIF5CO60282 957 aa14.14□□□□□ -0.15
CLK3-201ENST00000345005 GAP43P17677 238 aa14.14□□□□□ -0.15
CLK3-201ENST00000345005 SFNP31947 248 aa14.14□□□□□ -0.15
CLK3-201ENST00000345005 COPB2P35606 906 aa14.14□□□□□ -0.15
CLK3-201ENST00000345005 JAK3P52333 1124 aa14.14□□□□□ -0.15
CLK3-201ENST00000345005 HERVK_113P62684 666 aa14.14□□□□□ -0.15
CLK3-201ENST00000345005 KRT76Q01546 638 aa14.14□□□□□ -0.15
CLK3-201ENST00000345005 RAD51AP2Q09MP3 1159 aa14.14□□□□□ -0.15
CLK3-201ENST00000345005 RINT1Q6NUQ1 792 aa14.14□□□□□ -0.15
CLK3-201ENST00000345005 PPFIBP1Q86W92 1011 aa14.14□□□□□ -0.15
CLK3-201ENST00000345005 ANKRD35Q8N283 1001 aa14.14□□□□□ -0.15
CLK3-201ENST00000345005 RDM1Q8NG50 284 aa14.14□□□□□ -0.15
CLK3-201ENST00000345005 INPP4AQ96PE3 977 aaPredicted RBP14.14□□□□□ -0.15
CLK3-201ENST00000345005 REEP2Q9BRK0 252 aa14.14□□□□□ -0.15
CLK3-201ENST00000345005 LXNQ9BS40 222 aa14.14□□□□□ -0.15
CLK3-201ENST00000345005 VPS16Q9H269 839 aa14.14□□□□□ -0.15
CLK3-201ENST00000345005 ACBD3Q9H3P7 528 aa14.14□□□□□ -0.15
CLK3-201ENST00000345005 ZSWIM4Q9H7M6 989 aa14.14□□□□□ -0.15
CLK3-201ENST00000345005 GPBP1L1Q9HC44 474 aaPredicted RBP14.14□□□□□ -0.15
CLK3-201ENST00000345005 MYO1AQ9UBC5 1043 aa14.14□□□□□ -0.15
CLK3-201ENST00000345005 SAMM50Q9Y512 469 aa14.14□□□□□ -0.15
CLK3-201ENST00000345005 COL4A3BPQ9Y5P4 624 aa14.14□□□□□ -0.15
CLK3-201ENST00000345005 TBCAO75347 108 aaKnown RBP14.13□□□□□ -0.15
CLK3-201ENST00000345005 TBC1D8O95759 1140 aa14.13□□□□□ -0.15
CLK3-201ENST00000345005 SLC25A27O95847 323 aa14.13□□□□□ -0.15
CLK3-201ENST00000345005 PBX1P40424 430 aa14.13□□□□□ -0.15
CLK3-201ENST00000345005 C1QTNF8P60827 252 aa14.13□□□□□ -0.15
CLK3-201ENST00000345005 SNAPC2Q13487 334 aa14.13□□□□□ -0.15
CLK3-201ENST00000345005 LRRC41Q15345 812 aa14.13□□□□□ -0.15
CLK3-201ENST00000345005 GNPTABQ3T906 1256 aa14.13□□□□□ -0.15
CLK3-201ENST00000345005 TC2NQ8N9U0 490 aa14.13□□□□□ -0.15
CLK3-201ENST00000345005 BANK1Q8NDB2 785 aa14.13□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms