RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 OTOP1Q7RTM1 612 aa9.18□□□□□ -0.94
HMGB1-203ENST00000341423 KIAA1328Q86T90 577 aa9.18□□□□□ -0.94
HMGB1-203ENST00000341423 ATL2Q8NHH9 583 aa9.18□□□□□ -0.94
HMGB1-203ENST00000341423 CASP10Q92851 521 aa9.18□□□□□ -0.94
HMGB1-203ENST00000341423 P2RX7Q99572 595 aaKnown RBP9.18□□□□□ -0.94
HMGB1-203ENST00000341423 ATXN3LQ9H3M9 355 aa9.18□□□□□ -0.94
HMGB1-203ENST00000341423 KDRP35968 1356 aa9.18□□□□□ -0.94
HMGB1-203ENST00000341423 ASAP2O43150 1006 aa9.17□□□□□ -0.94
HMGB1-203ENST00000341423 ATP1A1P05023 1023 aaKnown RBP9.17□□□□□ -0.94
HMGB1-203ENST00000341423 KRT40Q6A162 431 aa9.17□□□□□ -0.94
HMGB1-203ENST00000341423 GET4Q7L5D6 327 aaPredicted RBP9.17□□□□□ -0.94
HMGB1-203ENST00000341423 RIN2Q8WYP3 895 aaPredicted RBP9.17□□□□□ -0.94
HMGB1-203ENST00000341423 C1orf112Q9NSG2 853 aa9.17□□□□□ -0.94
HMGB1-203ENST00000341423 TRPM5Q9NZQ8 1165 aa9.17□□□□□ -0.94
HMGB1-203ENST00000341423 DDX49Q9Y6V7 483 aaKnown RBP9.17□□□□□ -0.94
HMGB1-203ENST00000341423 ADGRB3O60242 1522 aa9.17□□□□□ -0.94
HMGB1-203ENST00000341423 TNS2Q63HR2 1409 aa9.17□□□□□ -0.94
HMGB1-203ENST00000341423 FER1L4A9Z1Z3 1794 aa9.17□□□□□ -0.94
HMGB1-203ENST00000341423 BTBD19C9JJ37 291 aa9.17□□□□□ -0.94
HMGB1-203ENST00000341423 CRCPO75575 148 aa9.17□□□□□ -0.94
HMGB1-203ENST00000341423 OR52Z1P0C646 297 aa9.17□□□□□ -0.94
HMGB1-203ENST00000341423 CTSEP14091 401 aa9.17□□□□□ -0.94
HMGB1-203ENST00000341423 HSPA4P34932 840 aa9.17□□□□□ -0.94
HMGB1-203ENST00000341423 NRLP54845 237 aa9.17□□□□□ -0.94
HMGB1-203ENST00000341423 NMIQ13287 307 aaPredicted RBP9.17□□□□□ -0.94
HMGB1-203ENST00000341423 ITGA7Q13683 1181 aa9.17□□□□□ -0.94
HMGB1-203ENST00000341423 NECTIN4Q96NY8 510 aa9.17□□□□□ -0.94
HMGB1-203ENST00000341423 C1QTNF7Q9BXJ2 289 aa9.17□□□□□ -0.94
HMGB1-203ENST00000341423 NFKBIZQ9BYH8 718 aa9.17□□□□□ -0.94
HMGB1-203ENST00000341423 SPG21Q9NZD8 308 aa9.17□□□□□ -0.94
HMGB1-203ENST00000341423 ENC1O14682 589 aa9.17□□□□□ -0.94
HMGB1-203ENST00000341423 GAS2O43903 313 aaKnown RBP9.17□□□□□ -0.94
HMGB1-203ENST00000341423 FKBP1CQ5VVH2 108 aa9.17□□□□□ -0.94
HMGB1-203ENST00000341423 GALNT17Q6IS24 598 aa9.17□□□□□ -0.94
HMGB1-203ENST00000341423 IFNLR1Q8IU57 520 aaPredicted RBP9.17□□□□□ -0.94
HMGB1-203ENST00000341423 MXD3Q9BW11 206 aa9.17□□□□□ -0.94
HMGB1-203ENST00000341423 CIPCQ9C0C6 399 aa9.17□□□□□ -0.94
HMGB1-203ENST00000341423 RGS12O14924 1447 aa9.17□□□□□ -0.94
HMGB1-203ENST00000341423 SPDYE5A6NIY4 337 aa9.17□□□□□ -0.94
HMGB1-203ENST00000341423 CETN3O15182 167 aa9.17□□□□□ -0.94
HMGB1-203ENST00000341423 KIAA0753Q2KHM9 967 aa9.17□□□□□ -0.94
HMGB1-203ENST00000341423 B3GALNT2Q8NCR0 500 aa9.17□□□□□ -0.94
HMGB1-203ENST00000341423 DDX25Q9UHL0 483 aaKnown RBP9.17□□□□□ -0.94
HMGB1-203ENST00000341423 SEPT4O43236 478 aa9.16□□□□□ -0.94
HMGB1-203ENST00000341423 NR3C2P08235 984 aa9.16□□□□□ -0.94
HMGB1-203ENST00000341423 THOP1P52888 689 aa9.16□□□□□ -0.94
HMGB1-203ENST00000341423 TDHQ8IZJ6 230 aa9.16□□□□□ -0.94
HMGB1-203ENST00000341423 ANKLE1Q8NAG6 615 aa9.16□□□□□ -0.94
HMGB1-203ENST00000341423 DNAJC7Q99615 494 aa9.16□□□□□ -0.94
HMGB1-203ENST00000341423 NUSAP1Q9BXS6 441 aaKnown RBP9.16□□□□□ -0.94
HMGB1-203ENST00000341423 JPH1Q9HDC5 661 aaPredicted RBP9.16□□□□□ -0.94
HMGB1-203ENST00000341423 N4BP3O15049 544 aa9.16□□□□□ -0.94
HMGB1-203ENST00000341423 PCSK1P29120 753 aa9.16□□□□□ -0.94
HMGB1-203ENST00000341423 SRSF11Q05519 484 aaKnown RBP9.16□□□□□ -0.94
HMGB1-203ENST00000341423 PRPF4BQ13523 1007 aaKnown RBP9.16□□□□□ -0.94
HMGB1-203ENST00000341423 DDX12PQ92771 950 aa9.16□□□□□ -0.94
HMGB1-203ENST00000341423 SH3KBP1Q96B97 665 aa9.16□□□□□ -0.94
HMGB1-203ENST00000341423 CTTNBP2Q8WZ74 1663 aa9.16□□□□□ -0.94
HMGB1-203ENST00000341423 NPM3O75607 178 aaKnown RBP9.16□□□□□ -0.94
HMGB1-203ENST00000341423 VIL1P09327 827 aaKnown RBP9.16□□□□□ -0.94
HMGB1-203ENST00000341423 DLATP10515 647 aaKnown RBP9.16□□□□□ -0.94
HMGB1-203ENST00000341423 HOXA13P31271 388 aaPredicted RBP9.16□□□□□ -0.94
HMGB1-203ENST00000341423 CYP27A1Q02318 531 aa9.16□□□□□ -0.94
HMGB1-203ENST00000341423 SGCGQ13326 291 aa9.16□□□□□ -0.94
HMGB1-203ENST00000341423 SAPCD2Q86UD0 394 aa9.16□□□□□ -0.94
HMGB1-203ENST00000341423 ACAP3Q96P50 834 aa9.16□□□□□ -0.94
HMGB1-203ENST00000341423 SPON2Q9BUD6 331 aa9.16□□□□□ -0.94
HMGB1-203ENST00000341423 UNC93B1Q9H1C4 597 aa9.16□□□□□ -0.94
HMGB1-203ENST00000341423 ZSWIM4Q9H7M6 989 aa9.16□□□□□ -0.94
HMGB1-203ENST00000341423 PTPN22Q9Y2R2 807 aa9.16□□□□□ -0.94
HMGB1-203ENST00000341423 IGSF9BQ9UPX0 1349 aa9.16□□□□□ -0.94
HMGB1-203ENST00000341423 MYOM2P54296 1465 aa9.16□□□□□ -0.94
HMGB1-203ENST00000341423 GCFC2P16383 781 aaKnown RBP9.16□□□□□ -0.94
HMGB1-203ENST00000341423 SEPT6Q14141 434 aa9.16□□□□□ -0.94
HMGB1-203ENST00000341423 IFI16Q16666 785 aaKnown RBP9.16□□□□□ -0.94
HMGB1-203ENST00000341423 SWSAP1Q6NVH7 229 aa9.16□□□□□ -0.94
HMGB1-203ENST00000341423 NOTUMQ6P988 496 aa9.16□□□□□ -0.94
HMGB1-203ENST00000341423 TTC14Q96N46 770 aa9.16□□□□□ -0.94
HMGB1-203ENST00000341423 TECP42680 631 aa9.15□□□□□ -0.94
HMGB1-203ENST00000341423 RARS2Q5T160 578 aaKnown RBP9.15□□□□□ -0.94
HMGB1-203ENST00000341423 PPP4R4Q6NUP7 873 aa9.15□□□□□ -0.94
HMGB1-203ENST00000341423 KIAA1143Q96AT1 154 aaPredicted RBP9.15□□□□□ -0.94
HMGB1-203ENST00000341423 COL4A3BPQ9Y5P4 624 aa9.15□□□□□ -0.94
HMGB1-203ENST00000341423 EIF3JO75822 258 aaKnown RBP9.15□□□□□ -0.94
HMGB1-203ENST00000341423 PSEN2P49810 448 aa9.15□□□□□ -0.94
HMGB1-203ENST00000341423 GRSF1Q12849 480 aaKnown RBP eCLIP9.15□□□□□ -0.94
HMGB1-203ENST00000341423 KYNUQ16719 465 aa9.15□□□□□ -0.94
HMGB1-203ENST00000341423 SCYL2Q6P3W7 929 aa9.15□□□□□ -0.94
HMGB1-203ENST00000341423 CYFIP1Q7L576 1253 aa9.15□□□□□ -0.94
HMGB1-203ENST00000341423 CCDC84Q86UT8 332 aaPredicted RBP9.15□□□□□ -0.94
HMGB1-203ENST00000341423 CCDC50Q8IVM0 306 aa9.15□□□□□ -0.94
HMGB1-203ENST00000341423 HERVK_113Q902F9 699 aa9.15□□□□□ -0.94
HMGB1-203ENST00000341423 NUCKS1Q9H1E3 243 aaKnown RBP9.15□□□□□ -0.94
HMGB1-203ENST00000341423 ASAH2Q9NR71 780 aa9.15□□□□□ -0.94
HMGB1-203ENST00000341423 TMCO5BA8MYB1 307 aa9.15□□□□□ -0.94
HMGB1-203ENST00000341423 CLDN3O15551 220 aa9.15□□□□□ -0.94
HMGB1-203ENST00000341423 NEMFO60524 1076 aa9.15□□□□□ -0.94
HMGB1-203ENST00000341423 SLC10A3P09131 477 aa9.15□□□□□ -0.94
HMGB1-203ENST00000341423 MBL2P11226 248 aaPredicted RBP9.15□□□□□ -0.94
HMGB1-203ENST00000341423 CTXN3Q4LDR2 81 aa9.15□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms