RNA–Protein interactions for RNA: ENST00000331433.4

CLCNKA-201, Transcript of chloride voltage-gated channel Ka, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CLCNKA, Length 2,475 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-201ENST00000331433 ZNF577Q9BSK1 485 aa16.35■□□□□ 0.21
CLCNKA-201ENST00000331433 UBXN6Q9BZV1 441 aa16.35■□□□□ 0.21
CLCNKA-201ENST00000331433 GANQ9H2C0 597 aa16.35■□□□□ 0.21
CLCNKA-201ENST00000331433 TUFT1Q9NNX1 390 aa16.35■□□□□ 0.21
CLCNKA-201ENST00000331433 JRKLQ9Y4A0 524 aa16.35■□□□□ 0.21
CLCNKA-201ENST00000331433 SLC9A1P19634 815 aa16.34■□□□□ 0.21
CLCNKA-201ENST00000331433 NMT1P30419 496 aaKnown RBP16.34■□□□□ 0.21
CLCNKA-201ENST00000331433 INPP5BP32019 993 aa16.34■□□□□ 0.21
CLCNKA-201ENST00000331433 PRELPP51888 382 aa16.34■□□□□ 0.21
CLCNKA-201ENST00000331433 CXCL9Q07325 125 aa16.34■□□□□ 0.21
CLCNKA-201ENST00000331433 SMC1AQ14683 1233 aaKnown RBP16.34■□□□□ 0.21
CLCNKA-201ENST00000331433 BMT2Q1RMZ1 405 aa16.34■□□□□ 0.21
CLCNKA-201ENST00000331433 ARHGAP27Q6ZUM4 889 aa16.34■□□□□ 0.21
CLCNKA-201ENST00000331433 C1orf186Q6ZWK4 172 aa16.34■□□□□ 0.21
CLCNKA-201ENST00000331433 FRMD5Q7Z6J6 570 aa16.34■□□□□ 0.21
CLCNKA-201ENST00000331433 FAM160B2Q86V87 743 aa16.34■□□□□ 0.21
CLCNKA-201ENST00000331433 SYN2Q92777 582 aaPredicted RBP16.34■□□□□ 0.21
CLCNKA-201ENST00000331433 PSMB7Q99436 277 aa16.34■□□□□ 0.21
CLCNKA-201ENST00000331433 ZNF341Q9BYN7 854 aa16.34■□□□□ 0.21
CLCNKA-201ENST00000331433 NUCKS1Q9H1E3 243 aaKnown RBP16.34■□□□□ 0.21
CLCNKA-201ENST00000331433 UNC45AQ9H3U1 944 aa16.34■□□□□ 0.21
CLCNKA-201ENST00000331433 TYW1Q9NV66 732 aaKnown RBP16.34■□□□□ 0.21
CLCNKA-201ENST00000331433 PGAP2Q9UHJ9 254 aa16.34■□□□□ 0.21
CLCNKA-201ENST00000331433 FEM1BQ9UK73 627 aa16.34■□□□□ 0.21
CLCNKA-201ENST00000331433 SNX12Q9UMY4 172 aa16.34■□□□□ 0.21
CLCNKA-201ENST00000331433 MAP2K7O14733 419 aa16.34■□□□□ 0.21
CLCNKA-201ENST00000331433 BUB1O43683 1085 aa16.34■□□□□ 0.21
CLCNKA-201ENST00000331433 ERLIN1O75477 346 aa16.34■□□□□ 0.21
CLCNKA-201ENST00000331433 FAM13AO94988 1023 aa16.34■□□□□ 0.21
CLCNKA-201ENST00000331433 USP14P54578 494 aa16.34■□□□□ 0.21
CLCNKA-201ENST00000331433 CKAP4Q07065 602 aaKnown RBP16.34■□□□□ 0.21
CLCNKA-201ENST00000331433 ZC2HC1CQ53FD0 456 aaPredicted RBP16.34■□□□□ 0.21
CLCNKA-201ENST00000331433 FAM83AQ86UY5 434 aa16.34■□□□□ 0.21
CLCNKA-201ENST00000331433 MYCT1Q8N699 235 aa16.34■□□□□ 0.21
CLCNKA-201ENST00000331433 AGBL3Q8NEM8 1001 aa16.34■□□□□ 0.21
CLCNKA-201ENST00000331433 COG1Q8WTW3 980 aa16.34■□□□□ 0.21
CLCNKA-201ENST00000331433 ZCCHC17Q9NP64 241 aaKnown RBP16.34■□□□□ 0.21
CLCNKA-201ENST00000331433 RBBP6Q7Z6E9 1792 aaKnown RBP16.33■□□□□ 0.21
CLCNKA-201ENST00000331433 ATAD5Q96QE3 1844 aa16.33■□□□□ 0.21
CLCNKA-201ENST00000331433 PJA2O43164 708 aa16.33■□□□□ 0.2
CLCNKA-201ENST00000331433 AFPP02771 609 aaKnown RBP16.33■□□□□ 0.2
CLCNKA-201ENST00000331433 XRCC5P13010 732 aaKnown RBP16.33■□□□□ 0.2
CLCNKA-201ENST00000331433 OAS2P29728 719 aaKnown RBP16.33■□□□□ 0.2
CLCNKA-201ENST00000331433 DGKZQ13574 1117 aa16.33■□□□□ 0.2
CLCNKA-201ENST00000331433 TCERG1LQ5VWI1 586 aa16.33■□□□□ 0.2
CLCNKA-201ENST00000331433 KSR1Q8IVT5 923 aa16.33■□□□□ 0.2
CLCNKA-201ENST00000331433 ALS2CR12Q96Q35 445 aa16.33■□□□□ 0.2
CLCNKA-201ENST00000331433 OLFML3Q9NRN5 406 aa16.33■□□□□ 0.2
CLCNKA-201ENST00000331433 PKD2L1Q9P0L9 805 aa16.33■□□□□ 0.2
CLCNKA-201ENST00000331433 SRCAPQ6ZRS2 3230 aa16.33■□□□□ 0.2
CLCNKA-201ENST00000331433 RBAK-RBAKDNI3L0D1 243 aa16.33■□□□□ 0.2
CLCNKA-201ENST00000331433 DDX39AO00148 427 aaKnown RBP16.33■□□□□ 0.2
CLCNKA-201ENST00000331433 NCK2O43639 380 aa16.33■□□□□ 0.2
CLCNKA-201ENST00000331433 PLA2G6O60733 806 aa16.33■□□□□ 0.2
CLCNKA-201ENST00000331433 ASNSP08243 561 aa16.33■□□□□ 0.2
CLCNKA-201ENST00000331433 DPY19L2P1Q6NXN4 242 aa16.33■□□□□ 0.2
CLCNKA-201ENST00000331433 NFRKBQ6P4R8 1299 aa16.33■□□□□ 0.2
CLCNKA-201ENST00000331433 ZNF771Q7L3S4 317 aaPredicted RBP16.33■□□□□ 0.2
CLCNKA-201ENST00000331433 MTMR14Q8NCE2 650 aa16.33■□□□□ 0.2
CLCNKA-201ENST00000331433 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP16.33■□□□□ 0.2
CLCNKA-201ENST00000331433 EHMT1Q9H9B1 1298 aa16.33■□□□□ 0.2
CLCNKA-201ENST00000331433 PRDM4Q9UKN5 801 aa16.33■□□□□ 0.2
CLCNKA-201ENST00000331433 CCPG1Q9ULG6 757 aa16.33■□□□□ 0.2
CLCNKA-201ENST00000331433 L1RE1Q9UN81 338 aa16.33■□□□□ 0.2
CLCNKA-201ENST00000331433 TGFB1I1O43294 461 aa16.32■□□□□ 0.2
CLCNKA-201ENST00000331433 CXCR5P32302 372 aa16.32■□□□□ 0.2
CLCNKA-201ENST00000331433 PTGER2P43116 358 aa16.32■□□□□ 0.2
CLCNKA-201ENST00000331433 C2orf54Q08AI8 447 aa16.32■□□□□ 0.2
CLCNKA-201ENST00000331433 KLHL30Q0D2K2 578 aa16.32■□□□□ 0.2
CLCNKA-201ENST00000331433 DEFB132Q7Z7B7 95 aa16.32■□□□□ 0.2
CLCNKA-201ENST00000331433 CREG2Q8IUH2 290 aa16.32■□□□□ 0.2
CLCNKA-201ENST00000331433 ZBED3Q96IU2 234 aaPredicted RBP16.32■□□□□ 0.2
CLCNKA-201ENST00000331433 COL20A1Q9P218 1284 aa16.32■□□□□ 0.2
CLCNKA-201ENST00000331433 ADAMTS1Q9UHI8 967 aa16.32■□□□□ 0.2
CLCNKA-201ENST00000331433 PCDHB13Q9Y5F0 798 aa16.32■□□□□ 0.2
CLCNKA-201ENST00000331433 ZNF536O15090 1300 aa16.32■□□□□ 0.2
CLCNKA-201ENST00000331433 ZMYM2Q9UBW7 1377 aa16.32■□□□□ 0.2
CLCNKA-201ENST00000331433 A0A087X0T9 212 aa16.31■□□□□ 0.2
CLCNKA-201ENST00000331433 IPO5O00410 1097 aaKnown RBP16.31■□□□□ 0.2
CLCNKA-201ENST00000331433 NFIBO00712 420 aa16.31■□□□□ 0.2
CLCNKA-201ENST00000331433 FAM228BP0C875 321 aa16.31■□□□□ 0.2
CLCNKA-201ENST00000331433 GAP43P17677 238 aa16.31■□□□□ 0.2
CLCNKA-201ENST00000331433 NAP1L1P55209 391 aaKnown RBP16.31■□□□□ 0.2
CLCNKA-201ENST00000331433 EXOC3L4Q17RC7 722 aa16.31■□□□□ 0.2
CLCNKA-201ENST00000331433 WDR93Q6P2C0 686 aa16.31■□□□□ 0.2
CLCNKA-201ENST00000331433 BANK1Q8NDB2 785 aa16.31■□□□□ 0.2
CLCNKA-201ENST00000331433 PARVGQ9HBI0 331 aa16.31■□□□□ 0.2
CLCNKA-201ENST00000331433 AIPL1Q9NZN9 384 aa16.31■□□□□ 0.2
CLCNKA-201ENST00000331433 ZHX1Q9UKY1 873 aaPredicted RBP16.31■□□□□ 0.2
CLCNKA-201ENST00000331433 ZMYND10O75800 440 aa16.31■□□□□ 0.2
CLCNKA-201ENST00000331433 EGFRP00533 1210 aa16.31■□□□□ 0.2
CLCNKA-201ENST00000331433 EPB41P11171 864 aaKnown RBP16.31■□□□□ 0.2
CLCNKA-201ENST00000331433 UCHL3P15374 230 aa16.31■□□□□ 0.2
CLCNKA-201ENST00000331433 ITGB5P18084 799 aa16.31■□□□□ 0.2
CLCNKA-201ENST00000331433 RPL13P26373 211 aaKnown RBP16.31■□□□□ 0.2
CLCNKA-201ENST00000331433 PON1P27169 355 aa16.31■□□□□ 0.2
CLCNKA-201ENST00000331433 RASA3Q14644 834 aa16.31■□□□□ 0.2
CLCNKA-201ENST00000331433 ASIC2Q16515 512 aa16.31■□□□□ 0.2
CLCNKA-201ENST00000331433 HDXQ7Z353 690 aa16.31■□□□□ 0.2
CLCNKA-201ENST00000331433 TEX2Q8IWB9 1127 aa16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms