RNA–Protein interactions for RNA: ENST00000288022.1

PDF-201, Transcript of peptide deformylase, mitochondrial, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDF, Length 1,158 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDF-201ENST00000288022 CXXC1Q9P0U4 656 aaPredicted RBP28.34■■■□□ 2.13
PDF-201ENST00000288022 SMC3Q9UQE7 1217 aa28.34■■■□□ 2.13
PDF-201ENST00000288022 MBLAC1A4D2B0 266 aaPredicted RBP28.33■■■□□ 2.13
PDF-201ENST00000288022 NBNO60934 754 aa28.33■■■□□ 2.13
PDF-201ENST00000288022 ATP4AP20648 1035 aa28.33■■■□□ 2.13
PDF-201ENST00000288022 GJB2P29033 226 aa28.33■■■□□ 2.13
PDF-201ENST00000288022 RASIP1Q5U651 963 aa28.33■■■□□ 2.13
PDF-201ENST00000288022 BBXQ8WY36 941 aaPredicted RBP28.33■■■□□ 2.13
PDF-201ENST00000288022 ZSCAN21Q9Y5A6 473 aaPredicted RBP28.33■■■□□ 2.13
PDF-201ENST00000288022 IGSF9BQ9UPX0 1349 aa28.33■■■□□ 2.13
PDF-201ENST00000288022 MYH9P35579 1960 aaKnown RBP28.32■■■□□ 2.12
PDF-201ENST00000288022 GPNMBQ14956 572 aa28.32■■■□□ 2.12
PDF-201ENST00000288022 ZNF484Q5JVG2 852 aa28.32■■■□□ 2.12
PDF-201ENST00000288022 SLFN12Q8IYM2 578 aa28.32■■■□□ 2.12
PDF-201ENST00000288022 DNAJB3Q8WWF6 145 aa28.32■■■□□ 2.12
PDF-201ENST00000288022 HAS1Q92839 578 aa28.32■■■□□ 2.12
PDF-201ENST00000288022 FAM167AQ96KS9 214 aa28.32■■■□□ 2.12
PDF-201ENST00000288022 FAM49AQ9H0Q0 323 aaPredicted RBP28.32■■■□□ 2.12
PDF-201ENST00000288022 COL1A2P08123 1366 aa28.32■■■□□ 2.12
PDF-201ENST00000288022 HSFX4A0A1B0GTS1 333 aaPredicted RBP28.31■■■□□ 2.12
PDF-201ENST00000288022 HSFX3A0A1B0GWH4 333 aaPredicted RBP28.31■■■□□ 2.12
PDF-201ENST00000288022 NEMFO60524 1076 aa28.31■■■□□ 2.12
PDF-201ENST00000288022 SMAD3P84022 425 aaKnown RBP28.31■■■□□ 2.12
PDF-201ENST00000288022 CALCRLQ16602 461 aa28.31■■■□□ 2.12
PDF-201ENST00000288022 UGCGQ16739 394 aa28.31■■■□□ 2.12
PDF-201ENST00000288022 B3GNT9Q6UX72 402 aa28.31■■■□□ 2.12
PDF-201ENST00000288022 VAV3Q9UKW4 847 aa28.31■■■□□ 2.12
PDF-201ENST00000288022 SLC4A7Q9Y6M7 1214 aa28.31■■■□□ 2.12
PDF-201ENST00000288022 WNT7AO00755 349 aa28.3■■■□□ 2.12
PDF-201ENST00000288022 CXCL10P02778 98 aa28.3■■■□□ 2.12
PDF-201ENST00000288022 KLRC1P26715 233 aa28.3■■■□□ 2.12
PDF-201ENST00000288022 PRKCEQ02156 737 aa28.3■■■□□ 2.12
PDF-201ENST00000288022 PPP2R5CQ13362 524 aa28.3■■■□□ 2.12
PDF-201ENST00000288022 MBTPS1Q14703 1052 aa28.3■■■□□ 2.12
PDF-201ENST00000288022 MTHFD1LQ6UB35 978 aa28.3■■■□□ 2.12
PDF-201ENST00000288022 NOSTRINQ8IVI9 506 aa28.3■■■□□ 2.12
PDF-201ENST00000288022 NRBP2Q9NSY0 501 aa28.3■■■□□ 2.12
PDF-201ENST00000288022 PCDHA2Q9Y5H9 948 aa28.3■■■□□ 2.12
PDF-201ENST00000288022 ZNF862O60290 1169 aa28.29■■■□□ 2.12
PDF-201ENST00000288022 OATP04181 439 aa28.29■■■□□ 2.12
PDF-201ENST00000288022 MCM7P33993 719 aa28.29■■■□□ 2.12
PDF-201ENST00000288022 FAM109BQ6ICB4 259 aaPredicted RBP28.29■■■□□ 2.12
PDF-201ENST00000288022 CNKSR3Q6P9H4 555 aa28.29■■■□□ 2.12
PDF-201ENST00000288022 WDR81Q562E7 1941 aa28.29■■■□□ 2.12
PDF-201ENST00000288022 KIF28PB7ZC32 967 aa28.28■■■□□ 2.12
PDF-201ENST00000288022 H3BQV1 296 aa28.28■■■□□ 2.12
PDF-201ENST00000288022 EML1O00423 815 aa28.28■■■□□ 2.12
PDF-201ENST00000288022 RPLP2P05387 115 aaKnown RBP28.28■■■□□ 2.12
PDF-201ENST00000288022 MCTP1Q6DN14 999 aa28.28■■■□□ 2.12
PDF-201ENST00000288022 NCAPH2Q6IBW4 605 aa28.28■■■□□ 2.12
PDF-201ENST00000288022 RPAINQ86UA6 219 aa28.28■■■□□ 2.12
PDF-201ENST00000288022 BANK1Q8NDB2 785 aa28.28■■■□□ 2.12
PDF-201ENST00000288022 NOL7Q9UMY1 257 aaKnown RBP28.28■■■□□ 2.12
PDF-201ENST00000288022 CEP131Q9UPN4 1083 aa28.28■■■□□ 2.12
PDF-201ENST00000288022 GRXCR1A8MXD5 290 aa28.27■■■□□ 2.12
PDF-201ENST00000288022 BAIAP3O94812 1187 aa28.27■■■□□ 2.12
PDF-201ENST00000288022 FAM26DQ5JW98 314 aa28.27■■■□□ 2.12
PDF-201ENST00000288022 GPR153Q6NV75 609 aa28.27■■■□□ 2.12
PDF-201ENST00000288022 SMIM35A0A1B0GVV1 85 aa28.26■■■□□ 2.11
PDF-201ENST00000288022 ZBTB42B2RXF5 422 aa28.26■■■□□ 2.11
PDF-201ENST00000288022 RBAK-RBAKDNI3L0D1 243 aa28.26■■■□□ 2.11
PDF-201ENST00000288022 M0QZ92 97 aa28.26■■■□□ 2.11
PDF-201ENST00000288022 CHRNA1P02708 482 aa28.26■■■□□ 2.11
PDF-201ENST00000288022 TXKP42681 527 aa28.26■■■□□ 2.11
PDF-201ENST00000288022 KCNJ6P48051 423 aa28.26■■■□□ 2.11
PDF-201ENST00000288022 MRPS6P82932 125 aaKnown RBP28.26■■■□□ 2.11
PDF-201ENST00000288022 SEPT9Q9UHD8 586 aaPredicted RBP28.26■■■□□ 2.11
PDF-201ENST00000288022 PCDHA12Q9UN75 941 aa28.26■■■□□ 2.11
PDF-201ENST00000288022 CDY2AQ9Y6F7 541 aa28.26■■■□□ 2.11
PDF-201ENST00000288022 ATP2A2P16615 1042 aaKnown RBP28.25■■■□□ 2.11
PDF-201ENST00000288022 U2AF2P26368 475 aaKnown RBP eCLIP28.25■■■□□ 2.11
PDF-201ENST00000288022 PSMC5P62195 406 aa28.25■■■□□ 2.11
PDF-201ENST00000288022 TMEM62Q0P6H9 643 aa28.25■■■□□ 2.11
PDF-201ENST00000288022 IKBKEQ14164 716 aa28.25■■■□□ 2.11
PDF-201ENST00000288022 ZNF174Q15697 407 aa28.25■■■□□ 2.11
PDF-201ENST00000288022 TTC38Q5R3I4 469 aa28.25■■■□□ 2.11
PDF-201ENST00000288022 IER5Q5VY09 327 aa28.25■■■□□ 2.11
PDF-201ENST00000288022 TTC12Q9H892 705 aaPredicted RBP28.25■■■□□ 2.11
PDF-201ENST00000288022 TET1Q8NFU7 2136 aa28.25■■■□□ 2.11
PDF-201ENST00000288022 C22orf31O95567 290 aa28.24■■■□□ 2.11
PDF-201ENST00000288022 CUL4AQ13619 759 aa28.24■■■□□ 2.11
PDF-201ENST00000288022 TCTN1Q2MV58 587 aa28.24■■■□□ 2.11
PDF-201ENST00000288022 XKR3Q5GH77 459 aa28.24■■■□□ 2.11
PDF-201ENST00000288022 Q7L0L9 218 aa28.24■■■□□ 2.11
PDF-201ENST00000288022 METTL13Q8N6R0 699 aa28.24■■■□□ 2.11
PDF-201ENST00000288022 DBF4BQ8NFT6 615 aa28.24■■■□□ 2.11
PDF-201ENST00000288022 SEPT8Q92599 483 aa28.24■■■□□ 2.11
PDF-201ENST00000288022 DKC1O60832 514 aaKnown RBP eCLIP28.23■■■□□ 2.11
PDF-201ENST00000288022 QARSP47897 775 aaKnown RBP28.23■■■□□ 2.11
PDF-201ENST00000288022 TRAPPC10P48553 1259 aa28.23■■■□□ 2.11
PDF-201ENST00000288022 SPIRE1Q08AE8 756 aa28.23■■■□□ 2.11
PDF-201ENST00000288022 MGAT3Q09327 533 aa28.23■■■□□ 2.11
PDF-201ENST00000288022 EPHA7Q15375 998 aa28.23■■■□□ 2.11
PDF-201ENST00000288022 PLEKHG4Q58EX7 1191 aa28.23■■■□□ 2.11
PDF-201ENST00000288022 ZNF697Q5TEC3 545 aa28.23■■■□□ 2.11
PDF-201ENST00000288022 LARP1BQ659C4 914 aaKnown RBP28.23■■■□□ 2.11
PDF-201ENST00000288022 NME8Q8N427 588 aa28.23■■■□□ 2.11
PDF-201ENST00000288022 DEFB123Q8N688 67 aa28.23■■■□□ 2.11
PDF-201ENST00000288022 OSBPL7Q9BZF2 842 aa28.23■■■□□ 2.11
PDF-201ENST00000288022 TMEM60Q9H2L4 133 aa28.23■■■□□ 2.11
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms