RNA–Protein interactions for RNA: ENST00000266546.10

CLSTN3-201, Transcript of calsyntenin 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,185 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-201ENST00000266546 ITIH6Q6UXX5 1313 aa12.55□□□□□ -0.4
CLSTN3-201ENST00000266546 PALM3A6NDB9 673 aaPredicted RBP12.55□□□□□ -0.4
CLSTN3-201ENST00000266546 STAT1P42224 750 aa12.55□□□□□ -0.4
CLSTN3-201ENST00000266546 TRIM68Q6AZZ1 485 aa12.55□□□□□ -0.4
CLSTN3-201ENST00000266546 MCF2L2Q86YR7 1114 aa12.55□□□□□ -0.4
CLSTN3-201ENST00000266546 RNF10Q8N5U6 811 aaKnown RBP12.55□□□□□ -0.4
CLSTN3-201ENST00000266546 SPATS2LQ9NUQ6 558 aaKnown RBP12.55□□□□□ -0.4
CLSTN3-201ENST00000266546 RREB1Q92766 1687 aa12.55□□□□□ -0.4
CLSTN3-201ENST00000266546 BCORQ6W2J9 1755 aa12.55□□□□□ -0.4
CLSTN3-201ENST00000266546 LRRIQ3A6PVS8 624 aaPredicted RBP12.55□□□□□ -0.4
CLSTN3-201ENST00000266546 GJC1P36383 396 aa12.55□□□□□ -0.4
CLSTN3-201ENST00000266546 WDR93Q6P2C0 686 aa12.55□□□□□ -0.4
CLSTN3-201ENST00000266546 KCTD1Q719H9 257 aa12.55□□□□□ -0.4
CLSTN3-201ENST00000266546 DCPSQ96C86 337 aaKnown RBP12.55□□□□□ -0.4
CLSTN3-201ENST00000266546 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.55□□□□□ -0.43e-11■■■■■ 236.2
CLSTN3-201ENST00000266546 ARMCX3Q9UH62 379 aaPredicted RBP12.55□□□□□ -0.4
CLSTN3-201ENST00000266546 RABGAP1Q9Y3P9 1069 aa12.55□□□□□ -0.4
CLSTN3-201ENST00000266546 A0A1W2PQC6 194 aa12.54□□□□□ -0.4
CLSTN3-201ENST00000266546 SPDYE2BA6NHP3 402 aa12.54□□□□□ -0.4
CLSTN3-201ENST00000266546 CALUO43852 315 aaPredicted RBP12.54□□□□□ -0.4
CLSTN3-201ENST00000266546 SPDYE6P0CI01 402 aa12.54□□□□□ -0.4
CLSTN3-201ENST00000266546 XRCC5P13010 732 aaKnown RBP12.54□□□□□ -0.4
CLSTN3-201ENST00000266546 HOXA7P31268 230 aaPredicted RBP12.54□□□□□ -0.4
CLSTN3-201ENST00000266546 GUCY1A3Q02108 690 aa12.54□□□□□ -0.4
CLSTN3-201ENST00000266546 AP3B2Q13367 1082 aa12.54□□□□□ -0.4
CLSTN3-201ENST00000266546 FAM26FQ5R3K3 315 aa12.54□□□□□ -0.4
CLSTN3-201ENST00000266546 NLRP14Q86W24 1093 aa12.54□□□□□ -0.4
CLSTN3-201ENST00000266546 SH2D3CQ8N5H7 860 aa12.54□□□□□ -0.4
CLSTN3-201ENST00000266546 SMCR8Q8TEV9 937 aaPredicted RBP12.54□□□□□ -0.4
CLSTN3-201ENST00000266546 NT5C3AQ9H0P0 336 aa12.54□□□□□ -0.4
CLSTN3-201ENST00000266546 ANKZF1Q9H8Y5 726 aa12.54□□□□□ -0.4
CLSTN3-201ENST00000266546 FAM114A2Q9NRY5 505 aa12.54□□□□□ -0.4
CLSTN3-201ENST00000266546 KLC4Q9NSK0 619 aa12.54□□□□□ -0.4
CLSTN3-201ENST00000266546 HPSEQ9Y251 543 aa12.54□□□□□ -0.4
CLSTN3-201ENST00000266546 FRMD4BQ9Y2L6 1034 aa12.54□□□□□ -0.4
CLSTN3-201ENST00000266546 ESYT2A0FGR8 921 aa12.54□□□□□ -0.4
CLSTN3-201ENST00000266546 UBE2Q2LH0YL09 131 aa12.54□□□□□ -0.4
CLSTN3-201ENST00000266546 PPP1R37O75864 691 aa12.54□□□□□ -0.4
CLSTN3-201ENST00000266546 AP1ARQ63HQ0 302 aa12.54□□□□□ -0.4
CLSTN3-201ENST00000266546 FAM83AQ86UY5 434 aa12.54□□□□□ -0.4
CLSTN3-201ENST00000266546 SULF1Q8IWU6 871 aa12.54□□□□□ -0.4
CLSTN3-201ENST00000266546 SLFN12Q8IYM2 578 aa12.54□□□□□ -0.4
CLSTN3-201ENST00000266546 CNOT10Q9H9A5 744 aaKnown RBP12.54□□□□□ -0.4
CLSTN3-201ENST00000266546 CAPN11Q9UMQ6 739 aa12.54□□□□□ -0.4
CLSTN3-201ENST00000266546 KDM3AQ9Y4C1 1321 aa12.54□□□□□ -0.4
CLSTN3-201ENST00000266546 FAM170AA1A519 330 aa12.54□□□□□ -0.4
CLSTN3-201ENST00000266546 F5H6K3 240 aa12.54□□□□□ -0.4
CLSTN3-201ENST00000266546 FKBP3Q00688 224 aaKnown RBP12.54□□□□□ -0.4
CLSTN3-201ENST00000266546 PLCB3Q01970 1234 aa12.54□□□□□ -0.4
CLSTN3-201ENST00000266546 KLRC3Q07444 240 aa12.54□□□□□ -0.4
CLSTN3-201ENST00000266546 GRIK5Q16478 980 aa12.54□□□□□ -0.4
CLSTN3-201ENST00000266546 STAG2Q8N3U4 1231 aa12.54□□□□□ -0.4
CLSTN3-201ENST00000266546 CERS5Q8N5B7 392 aa12.54□□□□□ -0.4
CLSTN3-201ENST00000266546 ZNF341Q9BYN7 854 aa12.54□□□□□ -0.4
CLSTN3-201ENST00000266546 SDAD1Q9NVU7 687 aaKnown RBP eCLIP12.54□□□□□ -0.47e-6■■□□□ 11.4
CLSTN3-201ENST00000266546 SNX12Q9UMY4 172 aa12.54□□□□□ -0.4
CLSTN3-201ENST00000266546 NID2Q14112 1375 aa12.53□□□□□ -0.4
CLSTN3-201ENST00000266546 GMNCA6NCL1 334 aa12.53□□□□□ -0.4
CLSTN3-201ENST00000266546 SUN1O94901 812 aa12.53□□□□□ -0.4
CLSTN3-201ENST00000266546 VIL1P09327 827 aaKnown RBP12.53□□□□□ -0.4
CLSTN3-201ENST00000266546 PDHBP11177 359 aa12.53□□□□□ -0.4
CLSTN3-201ENST00000266546 CDC37Q16543 378 aaPredicted RBP12.53□□□□□ -0.4
CLSTN3-201ENST00000266546 TEX2Q8IWB9 1127 aa12.53□□□□□ -0.4
CLSTN3-201ENST00000266546 ARHGEF2Q92974 986 aaKnown RBP12.53□□□□□ -0.4
CLSTN3-201ENST00000266546 SMC6Q96SB8 1091 aa12.53□□□□□ -0.4
CLSTN3-201ENST00000266546 VCXQ9H320 206 aa12.53□□□□□ -0.4
CLSTN3-201ENST00000266546 HOMER2Q9NSB8 354 aa12.53□□□□□ -0.4
CLSTN3-201ENST00000266546 FAM217BQ9NTX9 383 aaPredicted RBP12.53□□□□□ -0.4
CLSTN3-201ENST00000266546 CSADQ9Y600 493 aa12.53□□□□□ -0.4
CLSTN3-201ENST00000266546 POLR2MP0CAP2 368 aa12.53□□□□□ -0.4
CLSTN3-201ENST00000266546 FDX1P10109 184 aa12.53□□□□□ -0.4
CLSTN3-201ENST00000266546 PTPAQ15257 358 aa12.53□□□□□ -0.4
CLSTN3-201ENST00000266546 KRT26Q7Z3Y9 468 aa12.53□□□□□ -0.4
CLSTN3-201ENST00000266546 DAGLBQ8NCG7 672 aa12.53□□□□□ -0.4
CLSTN3-201ENST00000266546 KIFC2Q96AC6 838 aa12.53□□□□□ -0.4
CLSTN3-201ENST00000266546 KLHL29Q96CT2 875 aa12.53□□□□□ -0.4
CLSTN3-201ENST00000266546 ADAMTS1Q9UHI8 967 aa12.53□□□□□ -0.4
CLSTN3-201ENST00000266546 SYNPO2Q9UMS6 1093 aa12.53□□□□□ -0.4
CLSTN3-201ENST00000266546 TCHHQ07283 1943 aa12.53□□□□□ -0.4
CLSTN3-201ENST00000266546 FAM205CA6NFA0 338 aa12.53□□□□□ -0.4
CLSTN3-201ENST00000266546 PLCG1P19174 1290 aa12.53□□□□□ -0.4
CLSTN3-201ENST00000266546 HNRNPH1P31943 449 aaKnown RBP12.53□□□□□ -0.4
CLSTN3-201ENST00000266546 CUL1Q13616 776 aa12.53□□□□□ -0.4
CLSTN3-201ENST00000266546 FAM133BQ5BKY9 247 aaKnown RBP12.53□□□□□ -0.4
CLSTN3-201ENST00000266546 ZNF365Q70YC5 407 aa12.53□□□□□ -0.4
CLSTN3-201ENST00000266546 TRIM6Q9C030 488 aaPredicted RBP12.53□□□□□ -0.4
CLSTN3-201ENST00000266546 POLD4Q9HCU8 107 aa12.53□□□□□ -0.4
CLSTN3-201ENST00000266546 NCK2O43639 380 aa12.52□□□□□ -0.4
CLSTN3-201ENST00000266546 ADAM9Q13443 819 aa12.52□□□□□ -0.4
CLSTN3-201ENST00000266546 NBPF9Q3BBW0 867 aa12.52□□□□□ -0.4
CLSTN3-201ENST00000266546 TBCKQ8TEA7 893 aa12.52□□□□□ -0.4
CLSTN3-201ENST00000266546 LARP4BQ92615 738 aaKnown RBP12.52□□□□□ -0.4
CLSTN3-201ENST00000266546 COA7Q96BR5 231 aa12.52□□□□□ -0.4
CLSTN3-201ENST00000266546 PRMT6Q96LA8 375 aaPredicted RBP12.52□□□□□ -0.4
CLSTN3-201ENST00000266546 ATP6V1G3Q96LB4 118 aa12.52□□□□□ -0.4
CLSTN3-201ENST00000266546 MYOZ2Q9NPC6 264 aa12.52□□□□□ -0.4
CLSTN3-201ENST00000266546 MAD2L2Q9UI95 211 aa12.52□□□□□ -0.4
CLSTN3-201ENST00000266546 PCDHB13Q9Y5F0 798 aa12.52□□□□□ -0.4
CLSTN3-201ENST00000266546 KIF1CO43896 1103 aaKnown RBP12.52□□□□□ -0.41
CLSTN3-201ENST00000266546 LUC7L3O95232 432 aaKnown RBP12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms