RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 TADA2BQ86TJ2 420 aa11.02□□□□□ -0.65
LIG3-201ENST00000262327 KAT2BQ92831 832 aa11.02□□□□□ -0.65
LIG3-201ENST00000262327 SH3GL2Q99962 352 aa11.02□□□□□ -0.65
LIG3-201ENST00000262327 BMP2KQ9NSY1 1161 aaPredicted RBP11.02□□□□□ -0.65
LIG3-201ENST00000262327 EMILIN3Q9NT22 766 aa11.02□□□□□ -0.65
LIG3-201ENST00000262327 SFI1A8K8P3 1242 aa11.02□□□□□ -0.65
LIG3-201ENST00000262327 TMCO5BA8MYB1 307 aa11.02□□□□□ -0.65
LIG3-201ENST00000262327 CEP104O60308 925 aa11.02□□□□□ -0.65
LIG3-201ENST00000262327 NR2F2P24468 414 aa11.02□□□□□ -0.65
LIG3-201ENST00000262327 CACNB3P54284 484 aa11.02□□□□□ -0.65
LIG3-201ENST00000262327 CYP4A11Q02928 519 aa11.02□□□□□ -0.65
LIG3-201ENST00000262327 NAB2Q15742 525 aa11.02□□□□□ -0.65
LIG3-201ENST00000262327 ASIC2Q16515 512 aa11.02□□□□□ -0.65
LIG3-201ENST00000262327 STRIP1Q5VSL9 837 aa11.02□□□□□ -0.65
LIG3-201ENST00000262327 PPM1EQ8WY54 764 aa11.02□□□□□ -0.65
LIG3-201ENST00000262327 PSTPIP2Q9H939 334 aa11.02□□□□□ -0.65
LIG3-201ENST00000262327 RIC8AQ9NPQ8 531 aa11.02□□□□□ -0.65
LIG3-201ENST00000262327 ZNF219Q9P2Y4 722 aaPredicted RBP11.02□□□□□ -0.65
LIG3-201ENST00000262327 GAKO14976 1311 aa11.02□□□□□ -0.65
LIG3-201ENST00000262327 SSU72P8A0A1W2PR75 194 aa11.01□□□□□ -0.65
LIG3-201ENST00000262327 CLIC2O15247 247 aa11.01□□□□□ -0.65
LIG3-201ENST00000262327 MED24O75448 989 aa11.01□□□□□ -0.65
LIG3-201ENST00000262327 SLC18A3Q16572 532 aa11.01□□□□□ -0.65
LIG3-201ENST00000262327 CEP85LQ5SZL2 805 aa11.01□□□□□ -0.65
LIG3-201ENST00000262327 ZNF572Q7Z3I7 529 aaPredicted RBP11.01□□□□□ -0.65
LIG3-201ENST00000262327 ADAT2Q7Z6V5 191 aaKnown RBP11.01□□□□□ -0.65
LIG3-201ENST00000262327 PIK3R5Q8WYR1 880 aa11.01□□□□□ -0.65
LIG3-201ENST00000262327 SPAG5Q96R06 1193 aa11.01□□□□□ -0.65
LIG3-201ENST00000262327 MRIQ9BWK5 157 aa11.01□□□□□ -0.65
LIG3-201ENST00000262327 DAGLAQ9Y4D2 1042 aa11.01□□□□□ -0.65
LIG3-201ENST00000262327 RSPH10B2B2RC85 870 aa11.01□□□□□ -0.65
LIG3-201ENST00000262327 ECE2O60344 883 aa11.01□□□□□ -0.65
LIG3-201ENST00000262327 RSPH10BP0C881 870 aa11.01□□□□□ -0.65
LIG3-201ENST00000262327 KCNA1Q09470 495 aa11.01□□□□□ -0.65
LIG3-201ENST00000262327 PDIA5Q14554 519 aa11.01□□□□□ -0.65
LIG3-201ENST00000262327 COBLL1Q53SF7 1204 aa11.01□□□□□ -0.65
LIG3-201ENST00000262327 DALRD3Q5D0E6 543 aaKnown RBP11.01□□□□□ -0.65
LIG3-201ENST00000262327 NAA35Q5VZE5 725 aa11.01□□□□□ -0.65
LIG3-201ENST00000262327 ZNF571Q7Z3V5 609 aaPredicted RBP11.01□□□□□ -0.65
LIG3-201ENST00000262327 TRIM59Q8IWR1 403 aa11.01□□□□□ -0.65
LIG3-201ENST00000262327 DDX47Q9H0S4 455 aaKnown RBP11.01□□□□□ -0.65
LIG3-201ENST00000262327 AJAP1Q9UKB5 411 aaPredicted RBP11.01□□□□□ -0.65
LIG3-201ENST00000262327 BCS1LQ9Y276 419 aa11.01□□□□□ -0.65
LIG3-201ENST00000262327 ERLIN2O94905 339 aa11□□□□□ -0.65
LIG3-201ENST00000262327 CYP11B2P19099 503 aa11□□□□□ -0.65
LIG3-201ENST00000262327 PTGER2P43116 358 aa11□□□□□ -0.65
LIG3-201ENST00000262327 GSCP56915 257 aaPredicted RBP11□□□□□ -0.65
LIG3-201ENST00000262327 SEMA3FQ13275 785 aa11□□□□□ -0.65
LIG3-201ENST00000262327 MEI1Q5TIA1 1274 aa11□□□□□ -0.65
LIG3-201ENST00000262327 CUL5Q93034 780 aa11□□□□□ -0.65
LIG3-201ENST00000262327 TRIM31Q9BZY9 425 aa11□□□□□ -0.65
LIG3-201ENST00000262327 GDF3Q9NR23 364 aa11□□□□□ -0.65
LIG3-201ENST00000262327 PLAAQ9Y263 795 aa11□□□□□ -0.65
LIG3-201ENST00000262327 PNMA6FA0A0J9YX94 578 aa11□□□□□ -0.65
LIG3-201ENST00000262327 ESYT2A0FGR8 921 aa11□□□□□ -0.65
LIG3-201ENST00000262327 ITGA4P13612 1032 aa11□□□□□ -0.65
LIG3-201ENST00000262327 CASP4P49662 377 aa11□□□□□ -0.65
LIG3-201ENST00000262327 NT5C2P49902 561 aa11□□□□□ -0.65
LIG3-201ENST00000262327 ERVK-9P63128 1117 aa11□□□□□ -0.65
LIG3-201ENST00000262327 ZNF543Q08ER8 600 aa11□□□□□ -0.65
LIG3-201ENST00000262327 TCP10Q12799 353 aa11□□□□□ -0.65
LIG3-201ENST00000262327 PAK2Q13177 524 aa11□□□□□ -0.65
LIG3-201ENST00000262327 PRR16Q569H4 304 aa11□□□□□ -0.65
LIG3-201ENST00000262327 ARSHQ5FYA8 562 aa11□□□□□ -0.65
LIG3-201ENST00000262327 ALS2CLQ60I27 953 aa11□□□□□ -0.65
LIG3-201ENST00000262327 CCDC65Q8IXS2 484 aa11□□□□□ -0.65
LIG3-201ENST00000262327 EFCAB13Q8IY85 973 aa11□□□□□ -0.65
LIG3-201ENST00000262327 IQCKQ8N0W5 287 aa11□□□□□ -0.65
LIG3-201ENST00000262327 RNF10Q8N5U6 811 aaKnown RBP11□□□□□ -0.65
LIG3-201ENST00000262327 TAF4BQ92750 862 aa11□□□□□ -0.65
LIG3-201ENST00000262327 CAVIN3Q969G5 261 aa11□□□□□ -0.65
LIG3-201ENST00000262327 SGSM3Q96HU1 749 aa11□□□□□ -0.65
LIG3-201ENST00000262327 INPP4AQ96PE3 977 aaPredicted RBP11□□□□□ -0.65
LIG3-201ENST00000262327 HDAC9Q9UKV0 1011 aa11□□□□□ -0.65
LIG3-201ENST00000262327 CCDC189A1A4V9 331 aa11□□□□□ -0.65
LIG3-201ENST00000262327 PPIP5K2O43314 1243 aa11□□□□□ -0.65
LIG3-201ENST00000262327 KIF1CO43896 1103 aaKnown RBP11□□□□□ -0.65
LIG3-201ENST00000262327 MYBP10242 640 aa11□□□□□ -0.65
LIG3-201ENST00000262327 FLT3P36888 993 aa11□□□□□ -0.65
LIG3-201ENST00000262327 HDLBPQ00341 1268 aaKnown RBP11□□□□□ -0.65
LIG3-201ENST00000262327 ITIH3Q06033 890 aa11□□□□□ -0.65
LIG3-201ENST00000262327 RPS6KA1Q15418 735 aa11□□□□□ -0.65
LIG3-201ENST00000262327 AOC3Q16853 763 aa11□□□□□ -0.65
LIG3-201ENST00000262327 USH1GQ495M9 461 aa11□□□□□ -0.65
LIG3-201ENST00000262327 NEUROG2Q9H2A3 272 aa11□□□□□ -0.65
LIG3-201ENST00000262327 KCTD10Q9H3F6 313 aa11□□□□□ -0.65
LIG3-201ENST00000262327 DBNDD1Q9H9R9 158 aa11□□□□□ -0.65
LIG3-201ENST00000262327 PPANQ9NQ55 473 aaKnown RBP11□□□□□ -0.65
LIG3-201ENST00000262327 PCDHAC2Q9Y5I4 1007 aa11□□□□□ -0.65
LIG3-201ENST00000262327 A0A087WUV0 522 aaPredicted RBP10.99□□□□□ -0.65
LIG3-201ENST00000262327 COPB2P35606 906 aa10.99□□□□□ -0.65
LIG3-201ENST00000262327 PSMD2Q13200 908 aa10.99□□□□□ -0.65
LIG3-201ENST00000262327 ASPRV1Q53RT3 343 aa10.99□□□□□ -0.65
LIG3-201ENST00000262327 HHIPL2Q6UWX4 724 aa10.99□□□□□ -0.65
LIG3-201ENST00000262327 SFR1Q86XK3 245 aa10.99□□□□□ -0.65
LIG3-201ENST00000262327 KSR1Q8IVT5 923 aa10.99□□□□□ -0.65
LIG3-201ENST00000262327 ZFPM1Q8IX07 1006 aa10.99□□□□□ -0.65
LIG3-201ENST00000262327 CERS5Q8N5B7 392 aa10.99□□□□□ -0.65
LIG3-201ENST00000262327 USP38Q8NB14 1042 aa10.99□□□□□ -0.65
LIG3-201ENST00000262327 IQCDQ96DY2 449 aa10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms