RNA–Protein interactions for RNA: YJR042W

NUP85, Transcript of Subunit of the Nup84p subcomplex of the nuclear pore complex (NPC), yeast

Gene NUP85, Length 2,235 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP85	YJR042W	LSB3	P43603	459 aa	Known RBP	3.58	□□□□□ -1.84
NUP85	YJR042W	CHA4	P43634	648 aa		3.58	□□□□□ -1.84
NUP85	YJR042W	YDL186W	P48568	277 aa		3.58	□□□□□ -1.84
NUP85	YJR042W	INM2	Q05533	292 aa		3.58	□□□□□ -1.84
NUP85	YJR042W	GPN3	Q06543	272 aa		3.58	□□□□□ -1.84
NUP85	YJR042W	THI3	Q07471	609 aa		3.58	□□□□□ -1.84
NUP85	YJR042W	YLR040C	Q07988	224 aa		3.58	□□□□□ -1.84
NUP85	YJR042W	GET4	Q12125	312 aa		3.58	□□□□□ -1.84
NUP85	YJR042W	LAS17	Q12446	633 aa		3.58	□□□□□ -1.84
NUP85	YJR042W	YCL012C	Q8J0M4	134 aa		3.58	□□□□□ -1.84
NUP85	YJR042W	YER175W-A	Q8TGU4	54 aa		3.58	□□□□□ -1.84
NUP85	YJR042W	ADH2	P00331	348 aa	Known RBP	3.57	□□□□□ -1.84
NUP85	YJR042W	CHO2	P05374	869 aa	Known RBP	3.57	□□□□□ -1.84
NUP85	YJR042W	RHO1	P06780	209 aa	Known RBP	3.57	□□□□□ -1.84
NUP85	YJR042W	PEP4	P07267	405 aa	Known RBP	3.57	□□□□□ -1.84
NUP85	YJR042W	TCP1	P12612	559 aa	Known RBP	3.57	□□□□□ -1.84
NUP85	YJR042W	KSS1	P14681	368 aa		3.57	□□□□□ -1.84
NUP85	YJR042W	COS9	P36034	407 aa		3.57	□□□□□ -1.84
NUP85	YJR042W	PTC7	P38797	343 aa		3.57	□□□□□ -1.84
NUP85	YJR042W	UBA4	P38820	440 aa		3.57	□□□□□ -1.84
NUP85	YJR042W	MBB1	P39534	108 aa		3.57	□□□□□ -1.84
NUP85	YJR042W	ICP55	P40051	511 aa		3.57	□□□□□ -1.84
NUP85	YJR042W	PCI8	P40512	444 aa		3.57	□□□□□ -1.84
NUP85	YJR042W	SAD1	P43589	448 aa		3.57	□□□□□ -1.84
NUP85	YJR042W	UBX6	P47049	396 aa		3.57	□□□□□ -1.84
NUP85	YJR042W	CUS2	P53830	285 aa	Predicted RBP	3.57	□□□□□ -1.84
NUP85	YJR042W	FMP30	Q02883	468 aa		3.57	□□□□□ -1.84
NUP85	YJR042W	BAG7	Q12128	409 aa		3.57	□□□□□ -1.84
NUP85	YJR042W	YDR262W	Q12331	272 aa		3.57	□□□□□ -1.84
NUP85	YJR042W	HIS4	P00815	799 aa	Known RBP	3.56	□□□□□ -1.84
NUP85	YJR042W	GAL10	P04397	699 aa		3.56	□□□□□ -1.84
NUP85	YJR042W	GDH1	P07262	454 aa	Known RBP	3.56	□□□□□ -1.84
NUP85	YJR042W	CHO1	P08456	276 aa		3.56	□□□□□ -1.84
NUP85	YJR042W	THR4	P16120	514 aa	Known RBP	3.56	□□□□□ -1.84
NUP85	YJR042W	MSB1	P21339	1137 aa	Known RBP	3.56	□□□□□ -1.84
NUP85	YJR042W	MAK31	P23059	88 aa		3.56	□□□□□ -1.84
NUP85	YJR042W	GSH1	P32477	678 aa		3.56	□□□□□ -1.84
NUP85	YJR042W	PAD1	P33751	242 aa	Known RBP RIP-Chip data	3.56	□□□□□ -1.84	not detected
NUP85	YJR042W	YET1	P35723	206 aa		3.56	□□□□□ -1.84
NUP85	YJR042W	YKL162C	P36052	402 aa		3.56	□□□□□ -1.84
NUP85	YJR042W	AIM29	P36154	155 aa		3.56	□□□□□ -1.84
NUP85	YJR042W	ARA1	P38115	344 aa		3.56	□□□□□ -1.84
NUP85	YJR042W	BNA4	P38169	460 aa		3.56	□□□□□ -1.84
NUP85	YJR042W	KAP104	P38217	918 aa	Known RBP	3.56	□□□□□ -1.84
NUP85	YJR042W	TSC10	P38342	320 aa		3.56	□□□□□ -1.84
NUP85	YJR042W	RRP4	P38792	359 aa	Known RBP	3.56	□□□□□ -1.84
NUP85	YJR042W	RTT107	P38850	1070 aa		3.56	□□□□□ -1.84
NUP85	YJR042W	CCT2	P39076	527 aa	Known RBP	3.56	□□□□□ -1.84
NUP85	YJR042W	SLM1	P40485	686 aa		3.56	□□□□□ -1.84
NUP85	YJR042W	DSN1	P40568	576 aa		3.56	□□□□□ -1.84
NUP85	YJR042W	YIR016W	P40572	265 aa		3.56	□□□□□ -1.84
NUP85	YJR042W	GLG2	P47011	380 aa		3.56	□□□□□ -1.84
NUP85	YJR042W	TOS2	P50078	622 aa		3.56	□□□□□ -1.84
NUP85	YJR042W	TRM112	P53738	135 aa	Predicted RBP	3.56	□□□□□ -1.84
NUP85	YJR042W	YMR087W	Q04299	284 aa		3.56	□□□□□ -1.84
NUP85	YJR042W	AIM33	Q04516	312 aa		3.56	□□□□□ -1.84
NUP85	YJR042W	MED2	Q12124	431 aa		3.56	□□□□□ -1.84
NUP85	YJR042W	RNH203	Q12338	110 aa		3.56	□□□□□ -1.84
NUP85	YJR042W	YOS9	Q99220	542 aa		3.56	□□□□□ -1.84
NUP85	YJR042W	CDC21	P06785	304 aa		3.56	□□□□□ -1.84
NUP85	YJR042W	ATP1	P07251	545 aa	Known RBP	3.56	□□□□□ -1.84
NUP85	YJR042W	COR1	P07256	457 aa		3.56	□□□□□ -1.84
NUP85	YJR042W	CDC23	P16522	626 aa		3.56	□□□□□ -1.84
NUP85	YJR042W	PBN1	P25580	416 aa		3.56	□□□□□ -1.84
NUP85	YJR042W	FET3	P38993	636 aa		3.56	□□□□□ -1.84
NUP85	YJR042W	FAR3	P46671	204 aa		3.56	□□□□□ -1.84
NUP85	YJR042W	STB4	P50104	949 aa		3.56	□□□□□ -1.84
NUP85	YJR042W	KAP114	P53067	1004 aa		3.56	□□□□□ -1.84
NUP85	YJR042W	RET3	P53600	189 aa		3.56	□□□□□ -1.84
NUP85	YJR042W	MRPL22	P53881	309 aa		3.56	□□□□□ -1.84
NUP85	YJR042W	RRN11	Q04712	507 aa		3.56	□□□□□ -1.84
NUP85	YJR042W	CDC123	Q05791	360 aa		3.56	□□□□□ -1.84
NUP85	YJR042W	PIG1	Q06216	648 aa		3.56	□□□□□ -1.84
NUP85	YJR042W	GRS2	Q06817	618 aa		3.56	□□□□□ -1.84
NUP85	YJR042W	CMS1	Q07897	291 aa	Known RBP	3.56	□□□□□ -1.84
NUP85	YJR042W	TEN1	Q07921	160 aa		3.56	□□□□□ -1.84
NUP85	YJR042W	ABP140	Q08641	628 aa	Known RBP	3.56	□□□□□ -1.84
NUP85	YJR042W	SRO7	Q12038	1033 aa		3.56	□□□□□ -1.84
NUP85	YJR042W	PRP46	Q12417	451 aa	Predicted RBP	3.56	□□□□□ -1.84
NUP85	YJR042W	SCEI	P03882	235 aa		3.55	□□□□□ -1.84
NUP85	YJR042W	GPI12	P23797	304 aa		3.55	□□□□□ -1.84
NUP85	YJR042W	RHB1	P25378	209 aa		3.55	□□□□□ -1.84
NUP85	YJR042W	ELF1	P36053	145 aa		3.55	□□□□□ -1.84
NUP85	YJR042W	CTK3	P46963	296 aa	Predicted RBP	3.55	□□□□□ -1.84
NUP85	YJR042W	YNL260C	P53846	198 aa		3.55	□□□□□ -1.84
NUP85	YJR042W	NRG1	Q03125	231 aa		3.55	□□□□□ -1.84
NUP85	YJR042W	EBS1	Q03466	884 aa	Known RBP	3.55	□□□□□ -1.84
NUP85	YJR042W	BRX1	Q08235	291 aa	Known RBP	3.55	□□□□□ -1.84
NUP85	YJR042W	LCB4	Q12246	624 aa		3.55	□□□□□ -1.84
NUP85	YJR042W	SWM1	Q12379	170 aa		3.55	□□□□□ -1.84
NUP85	YJR042W	CMC2	Q3E7A4	109 aa		3.55	□□□□□ -1.84
NUP85	YJR042W	PMD1	P32634	1753 aa		3.55	□□□□□ -1.84
NUP85	YJR042W	CDC33	P07260	213 aa	Known RBP	3.55	□□□□□ -1.84
NUP85	YJR042W	SPS4	P09937	338 aa		3.55	□□□□□ -1.84
NUP85	YJR042W	RPL18A	P0CX49	186 aa	Known RBP	3.55	□□□□□ -1.84
NUP85	YJR042W	RPL18B	P0CX50	186 aa	Known RBP	3.55	□□□□□ -1.84
NUP85	YJR042W	CKI1	P20485	582 aa		3.55	□□□□□ -1.84
NUP85	YJR042W	DEG1	P31115	442 aa	Known RBP	3.55	□□□□□ -1.84
NUP85	YJR042W	ZUO1	P32527	433 aa	Known RBP	3.55	□□□□□ -1.84
NUP85	YJR042W	UBC6	P33296	250 aa	Predicted RBP	3.55	□□□□□ -1.84

Retrieved 100 of 5,963 RNA–protein pairs in 14.7 ms