RNA–Protein interactions for RNA: ENST00000627587.2

PDLIM5-223, Transcript of PDZ and LIM domain 5, human

TSL 2

Gene PDLIM5, Length 1,853 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PDLIM5-223	ENST00000627587	STAT6	P42226	847 aa		10.66	□□□□□ -0.7
PDLIM5-223	ENST00000627587	ATN1	P54259	1190 aa	Predicted RBP	10.66	□□□□□ -0.7
PDLIM5-223	ENST00000627587	MRPS9	P82933	396 aa	Known RBP	10.66	□□□□□ -0.7
PDLIM5-223	ENST00000627587	CUL4B	Q13620	913 aa		10.66	□□□□□ -0.7
PDLIM5-223	ENST00000627587	ZNF697	Q5TEC3	545 aa		10.66	□□□□□ -0.7
PDLIM5-223	ENST00000627587	KCNK18	Q7Z418	384 aa		10.66	□□□□□ -0.7
PDLIM5-223	ENST00000627587	TAAR1	Q96RJ0	339 aa		10.66	□□□□□ -0.7
PDLIM5-223	ENST00000627587	MED15	Q96RN5	788 aa		10.66	□□□□□ -0.7
PDLIM5-223	ENST00000627587	BLZF1	Q9H2G9	400 aa		10.66	□□□□□ -0.7
PDLIM5-223	ENST00000627587	ATP11B	Q9Y2G3	1177 aa		10.66	□□□□□ -0.7
PDLIM5-223	ENST00000627587	DIS3	Q9Y2L1	958 aa	Known RBP	10.66	□□□□□ -0.7
PDLIM5-223	ENST00000627587	MEIS1	O00470	390 aa		10.65	□□□□□ -0.7
PDLIM5-223	ENST00000627587	ITGB5	P18084	799 aa		10.65	□□□□□ -0.7
PDLIM5-223	ENST00000627587	NCAPH	Q15003	741 aa		10.65	□□□□□ -0.7
PDLIM5-223	ENST00000627587	SNX17	Q15036	470 aa		10.65	□□□□□ -0.7
PDLIM5-223	ENST00000627587	TMEM119	Q4V9L6	283 aa		10.65	□□□□□ -0.7
PDLIM5-223	ENST00000627587	HYI	Q5T013	277 aa		10.65	□□□□□ -0.7
PDLIM5-223	ENST00000627587	GJC2	Q5T442	439 aa	Predicted RBP	10.65	□□□□□ -0.7
PDLIM5-223	ENST00000627587	RRAGB	Q5VZM2	374 aa		10.65	□□□□□ -0.7
PDLIM5-223	ENST00000627587	NCAPG2	Q86XI2	1143 aa		10.65	□□□□□ -0.7
PDLIM5-223	ENST00000627587	SLFN12	Q8IYM2	578 aa		10.65	□□□□□ -0.7
PDLIM5-223	ENST00000627587	PPP1R9B	Q96SB3	815 aa		10.65	□□□□□ -0.7
PDLIM5-223	ENST00000627587	BPIFA3	Q9BQP9	254 aa		10.65	□□□□□ -0.7
PDLIM5-223	ENST00000627587	TEX13B	Q9BXU2	312 aa		10.65	□□□□□ -0.7
PDLIM5-223	ENST00000627587	NAT10	Q9H0A0	1025 aa	Known RBP	10.65	□□□□□ -0.7
PDLIM5-223	ENST00000627587	HSD3B7	Q9H2F3	369 aa		10.65	□□□□□ -0.7
PDLIM5-223	ENST00000627587	KLRC4	O43908	158 aa		10.64	□□□□□ -0.71
PDLIM5-223	ENST00000627587	COBL	O75128	1261 aa		10.64	□□□□□ -0.71
PDLIM5-223	ENST00000627587	PSMD10	O75832	226 aa		10.64	□□□□□ -0.71
PDLIM5-223	ENST00000627587	SMC2	O95347	1197 aa		10.64	□□□□□ -0.71
PDLIM5-223	ENST00000627587	AR	P10275	920 aa		10.64	□□□□□ -0.71
PDLIM5-223	ENST00000627587	BAAT	Q14032	418 aa	Predicted RBP	10.64	□□□□□ -0.71
PDLIM5-223	ENST00000627587	PLS1	Q14651	629 aa		10.64	□□□□□ -0.71
PDLIM5-223	ENST00000627587	CEP55	Q53EZ4	464 aa		10.64	□□□□□ -0.71
PDLIM5-223	ENST00000627587	B3GNT9	Q6UX72	402 aa		10.64	□□□□□ -0.71
PDLIM5-223	ENST00000627587	SLC5A5	Q92911	643 aa		10.64	□□□□□ -0.71
PDLIM5-223	ENST00000627587	SMARCE1	Q969G3	411 aa		10.64	□□□□□ -0.71
PDLIM5-223	ENST00000627587	CALML4	Q96GE6	196 aa		10.64	□□□□□ -0.71
PDLIM5-223	ENST00000627587	FAM20A	Q96MK3	541 aa		10.64	□□□□□ -0.71
PDLIM5-223	ENST00000627587	ASTN1	O14525	1302 aa		10.64	□□□□□ -0.71
PDLIM5-223	ENST00000627587	GTPBP6	O43824	516 aa	Predicted RBP	10.64	□□□□□ -0.71
PDLIM5-223	ENST00000627587	SMAD3	P84022	425 aa	Known RBP	10.64	□□□□□ -0.71
PDLIM5-223	ENST00000627587	PGM5	Q15124	567 aa		10.64	□□□□□ -0.71
PDLIM5-223	ENST00000627587	KRT79	Q5XKE5	535 aa		10.64	□□□□□ -0.71
PDLIM5-223	ENST00000627587	PCNX4	Q63HM2	1172 aa		10.64	□□□□□ -0.71
PDLIM5-223	ENST00000627587	NSMF	Q6X4W1	530 aa		10.64	□□□□□ -0.71
PDLIM5-223	ENST00000627587	RNF207	Q6ZRF8	634 aa		10.64	□□□□□ -0.71
PDLIM5-223	ENST00000627587	PHF6	Q8IWS0	365 aa	Known RBP eCLIP	10.64	□□□□□ -0.71
PDLIM5-223	ENST00000627587	AOPEP	Q8N6M6	819 aa		10.64	□□□□□ -0.71
PDLIM5-223	ENST00000627587	TRIML1	Q8N9V2	468 aa		10.64	□□□□□ -0.71
PDLIM5-223	ENST00000627587	SNX29	Q8TEQ0	813 aa		10.64	□□□□□ -0.71
PDLIM5-223	ENST00000627587	MAML3	Q96JK9	1138 aa		10.64	□□□□□ -0.71
PDLIM5-223	ENST00000627587	MXRA8	Q9BRK3	442 aa		10.64	□□□□□ -0.71
PDLIM5-223	ENST00000627587	CUEDC2	Q9H467	287 aa		10.64	□□□□□ -0.71
PDLIM5-223	ENST00000627587	A1CF	Q9NQ94	594 aa	Known RBP	10.64	□□□□□ -0.71
PDLIM5-223	ENST00000627587	PXMP2	Q9NR77	195 aa		10.64	□□□□□ -0.71
PDLIM5-223	ENST00000627587	CYP39A1	Q9NYL5	469 aa		10.64	□□□□□ -0.71
PDLIM5-223	ENST00000627587	UBIAD1	Q9Y5Z9	338 aa		10.64	□□□□□ -0.71
PDLIM5-223	ENST00000627587	TMEM265	A0A087WTH1	108 aa		10.63	□□□□□ -0.71
PDLIM5-223	ENST00000627587	EML1	O00423	815 aa		10.63	□□□□□ -0.71
PDLIM5-223	ENST00000627587	MED24	O75448	989 aa		10.63	□□□□□ -0.71
PDLIM5-223	ENST00000627587	SPATA31C1	P0DKV0	1188 aa		10.63	□□□□□ -0.71
PDLIM5-223	ENST00000627587	RARB	P10826	455 aa		10.63	□□□□□ -0.71
PDLIM5-223	ENST00000627587	EIF2AK2	P19525	551 aa	Known RBP	10.63	□□□□□ -0.71
PDLIM5-223	ENST00000627587	ADCYAP1R1	P41586	468 aa		10.63	□□□□□ -0.71
PDLIM5-223	ENST00000627587	LRRC41	Q15345	812 aa		10.63	□□□□□ -0.71
PDLIM5-223	ENST00000627587	TKFC	Q3LXA3	575 aa		10.63	□□□□□ -0.71
PDLIM5-223	ENST00000627587	RNF180	Q86T96	592 aa		10.63	□□□□□ -0.71
PDLIM5-223	ENST00000627587	PLA2G4D	Q86XP0	818 aa		10.63	□□□□□ -0.71
PDLIM5-223	ENST00000627587	RIOX2	Q8IUF8	465 aa		10.63	□□□□□ -0.71
PDLIM5-223	ENST00000627587	MSL3	Q8N5Y2	521 aa	Known RBP	10.63	□□□□□ -0.71
PDLIM5-223	ENST00000627587	CDK5RAP3	Q96JB5	506 aa		10.63	□□□□□ -0.71
PDLIM5-223	ENST00000627587	GUCD1	Q96NT3	240 aa		10.63	□□□□□ -0.71
PDLIM5-223	ENST00000627587	GSDMA	Q96QA5	445 aa		10.63	□□□□□ -0.71
PDLIM5-223	ENST00000627587	PDCD2L	Q9BRP1	358 aa		10.63	□□□□□ -0.71
PDLIM5-223	ENST00000627587	WDR11	Q9BZH6	1224 aa		10.63	□□□□□ -0.71
PDLIM5-223	ENST00000627587	MAGEF1	Q9HAY2	307 aa		10.63	□□□□□ -0.71
PDLIM5-223	ENST00000627587	MCM3AP	O60318	1980 aa		10.63	□□□□□ -0.71
PDLIM5-223	ENST00000627587	LOXHD1	Q8IVV2	1947 aa		10.62	□□□□□ -0.71
PDLIM5-223	ENST00000627587	POTEB3	A0JP26	581 aa		10.62	□□□□□ -0.71
PDLIM5-223	ENST00000627587	DHX15	O43143	795 aa	Known RBP	10.62	□□□□□ -0.71
PDLIM5-223	ENST00000627587	CLCN6	P51797	869 aa		10.62	□□□□□ -0.71
PDLIM5-223	ENST00000627587	SET	Q01105	290 aa	Predicted RBP	10.62	□□□□□ -0.71
PDLIM5-223	ENST00000627587	KCTD2	Q14681	263 aa		10.62	□□□□□ -0.71
PDLIM5-223	ENST00000627587	SHH	Q15465	462 aa		10.62	□□□□□ -0.71
PDLIM5-223	ENST00000627587	POTEB	Q6S5H4	581 aa		10.62	□□□□□ -0.71
PDLIM5-223	ENST00000627587	SMYD4	Q8IYR2	804 aa	Predicted RBP	10.62	□□□□□ -0.71
PDLIM5-223	ENST00000627587	BAD	Q92934	168 aa		10.62	□□□□□ -0.71
PDLIM5-223	ENST00000627587	RMDN3	Q96TC7	470 aa		10.62	□□□□□ -0.71
PDLIM5-223	ENST00000627587	MMP19	Q99542	508 aa		10.62	□□□□□ -0.71
PDLIM5-223	ENST00000627587	TSEN34	Q9BSV6	310 aa	Known RBP	10.62	□□□□□ -0.71
PDLIM5-223	ENST00000627587	TRIM9	Q9C026	710 aa		10.62	□□□□□ -0.71
PDLIM5-223	ENST00000627587	SEMA6B	Q9H3T3	888 aa		10.62	□□□□□ -0.71
PDLIM5-223	ENST00000627587	ACAD9	Q9H845	621 aa		10.62	□□□□□ -0.71
PDLIM5-223	ENST00000627587	PHF24	Q9UPV7	400 aa		10.62	□□□□□ -0.71
PDLIM5-223	ENST00000627587	PLXNA1	Q9UIW2	1896 aa		10.62	□□□□□ -0.71
PDLIM5-223	ENST00000627587	BECN2	A8MW95	431 aa		10.61	□□□□□ -0.71
PDLIM5-223	ENST00000627587	GOLGA6L19	H0YKK7	550 aa		10.61	□□□□□ -0.71
PDLIM5-223	ENST00000627587	RGS20	O76081	388 aa		10.61	□□□□□ -0.71
PDLIM5-223	ENST00000627587	RPN1	P04843	607 aa	Known RBP	10.61	□□□□□ -0.71

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