RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 BRAPQ7Z569 592 aa18.66■□□□□ 0.58
CCDC28A-202ENST00000611852 SH3RF1Q7Z6J0 888 aa18.66■□□□□ 0.58
CCDC28A-202ENST00000611852 FERMT3Q86UX7 667 aa18.66■□□□□ 0.58
CCDC28A-202ENST00000611852 ZNF302Q9NR11 478 aa18.66■□□□□ 0.58
CCDC28A-202ENST00000611852 ZMYND8Q9ULU4 1186 aaPredicted RBP18.66■□□□□ 0.58
CCDC28A-202ENST00000611852 MTMR6Q9Y217 621 aa18.66■□□□□ 0.58
CCDC28A-202ENST00000611852 PCDHB6Q9Y5E3 794 aa18.66■□□□□ 0.58
CCDC28A-202ENST00000611852 TRIM43BA6NCK2 446 aa18.65■□□□□ 0.58
CCDC28A-202ENST00000611852 H0YGN5 161 aa18.65■□□□□ 0.58
CCDC28A-202ENST00000611852 SYN1P17600 705 aa18.65■□□□□ 0.58
CCDC28A-202ENST00000611852 HOXC8P31273 242 aa18.65■□□□□ 0.58
CCDC28A-202ENST00000611852 SLC26A2P50443 739 aa18.65■□□□□ 0.58
CCDC28A-202ENST00000611852 SPIRE1Q08AE8 756 aa18.65■□□□□ 0.58
CCDC28A-202ENST00000611852 HIC1Q14526 733 aa18.65■□□□□ 0.58
CCDC28A-202ENST00000611852 MIER3Q7Z3K6 550 aa18.65■□□□□ 0.58
CCDC28A-202ENST00000611852 RDM1Q8NG50 284 aa18.65■□□□□ 0.58
CCDC28A-202ENST00000611852 TRIM43Q96BQ3 446 aaPredicted RBP18.65■□□□□ 0.58
CCDC28A-202ENST00000611852 CTAGE1Q96RT6 745 aa18.65■□□□□ 0.58
CCDC28A-202ENST00000611852 PRDM5Q9NQX1 630 aaPredicted RBP18.65■□□□□ 0.58
CCDC28A-202ENST00000611852 TMEM39AQ9NV64 488 aa18.65■□□□□ 0.58
CCDC28A-202ENST00000611852 TBX21Q9UL17 535 aa18.65■□□□□ 0.58
CCDC28A-202ENST00000611852 MAFBQ9Y5Q3 323 aaPredicted RBP18.65■□□□□ 0.58
CCDC28A-202ENST00000611852 EML1O00423 815 aa18.64■□□□□ 0.58
CCDC28A-202ENST00000611852 BECN1Q14457 450 aa18.64■□□□□ 0.58
CCDC28A-202ENST00000611852 PTGISQ16647 500 aa18.64■□□□□ 0.58
CCDC28A-202ENST00000611852 TTC12Q9H892 705 aaPredicted RBP18.64■□□□□ 0.58
CCDC28A-202ENST00000611852 PCDH10Q9P2E7 1040 aa18.64■□□□□ 0.58
CCDC28A-202ENST00000611852 GABBR1Q9UBS5 961 aa18.64■□□□□ 0.58
CCDC28A-202ENST00000611852 PRKAG2Q9UGJ0 569 aa18.64■□□□□ 0.58
CCDC28A-202ENST00000611852 PCDHA12Q9UN75 941 aa18.64■□□□□ 0.58
CCDC28A-202ENST00000611852 WDR81Q562E7 1941 aa18.64■□□□□ 0.57
CCDC28A-202ENST00000611852 KIAA0355O15063 1070 aa18.64■□□□□ 0.57
CCDC28A-202ENST00000611852 ATP4AP20648 1035 aa18.64■□□□□ 0.57
CCDC28A-202ENST00000611852 TXKP42681 527 aa18.64■□□□□ 0.57
CCDC28A-202ENST00000611852 RESTQ13127 1097 aa18.64■□□□□ 0.57
CCDC28A-202ENST00000611852 PLCB4Q15147 1175 aa18.64■□□□□ 0.57
CCDC28A-202ENST00000611852 PDXDC2PQ6P474 469 aa18.64■□□□□ 0.57
CCDC28A-202ENST00000611852 C4orf32Q8N8J7 132 aa18.64■□□□□ 0.57
CCDC28A-202ENST00000611852 EIF4ENIF1Q9NRA8 985 aaKnown RBP18.64■□□□□ 0.57
CCDC28A-202ENST00000611852 SETD4Q9NVD3 440 aa18.64■□□□□ 0.57
CCDC28A-202ENST00000611852 IGSF9BQ9UPX0 1349 aa18.63■□□□□ 0.57
CCDC28A-202ENST00000611852 MYH9P35579 1960 aaKnown RBP18.63■□□□□ 0.57
CCDC28A-202ENST00000611852 C17orf102A2RUQ5 167 aa18.63■□□□□ 0.57
CCDC28A-202ENST00000611852 OR52Z1P0C646 297 aa18.63■□□□□ 0.57
CCDC28A-202ENST00000611852 ZNF200P98182 395 aaPredicted RBP18.63■□□□□ 0.57
CCDC28A-202ENST00000611852 NOD1Q9Y239 953 aa18.63■□□□□ 0.57
CCDC28A-202ENST00000611852 NRCAMQ92823 1304 aa18.62■□□□□ 0.57
CCDC28A-202ENST00000611852 TRIP12Q14669 1992 aaPredicted RBP18.62■□□□□ 0.57
CCDC28A-202ENST00000611852 POTEB3A0JP26 581 aa18.62■□□□□ 0.57
CCDC28A-202ENST00000611852 CYP2C9P11712 490 aa18.62■□□□□ 0.57
CCDC28A-202ENST00000611852 PDIA4P13667 645 aaKnown RBP18.62■□□□□ 0.57
CCDC28A-202ENST00000611852 ITGB8P26012 769 aa18.62■□□□□ 0.57
CCDC28A-202ENST00000611852 ADAM17P78536 824 aa18.62■□□□□ 0.57
CCDC28A-202ENST00000611852 PPFIA1Q13136 1202 aa18.62■□□□□ 0.57
CCDC28A-202ENST00000611852 PTGDRQ13258 359 aa18.62■□□□□ 0.57
CCDC28A-202ENST00000611852 UGCGQ16739 394 aa18.62■□□□□ 0.57
CCDC28A-202ENST00000611852 NCAPH2Q6IBW4 605 aa18.62■□□□□ 0.57
CCDC28A-202ENST00000611852 POTEBQ6S5H4 581 aa18.62■□□□□ 0.57
CCDC28A-202ENST00000611852 ATP8B4Q8TF62 1192 aa18.62■□□□□ 0.57
CCDC28A-202ENST00000611852 LMBR1Q8WVP7 490 aa18.62■□□□□ 0.57
CCDC28A-202ENST00000611852 TRPC6Q9Y210 931 aa18.62■□□□□ 0.57
CCDC28A-202ENST00000611852 KAT6AQ92794 2004 aa18.61■□□□□ 0.57
CCDC28A-202ENST00000611852 ZNF862O60290 1169 aa18.61■□□□□ 0.57
CCDC28A-202ENST00000611852 INSRRP14616 1297 aa18.61■□□□□ 0.57
CCDC28A-202ENST00000611852 ATP6V0A1Q93050 837 aa18.61■□□□□ 0.57
CCDC28A-202ENST00000611852 NOC4LQ9BVI4 516 aaKnown RBP18.61■□□□□ 0.57
CCDC28A-202ENST00000611852 LAD1O00515 517 aa18.6■□□□□ 0.57
CCDC28A-202ENST00000611852 TREHO43280 583 aa18.6■□□□□ 0.57
CCDC28A-202ENST00000611852 TIMP1P01033 207 aa18.6■□□□□ 0.57
CCDC28A-202ENST00000611852 GNAT1P11488 350 aa18.6■□□□□ 0.57
CCDC28A-202ENST00000611852 RAG1P15918 1043 aa18.6■□□□□ 0.57
CCDC28A-202ENST00000611852 EPHA7Q15375 998 aa18.6■□□□□ 0.57
CCDC28A-202ENST00000611852 GRIK4Q16099 956 aa18.6■□□□□ 0.57
CCDC28A-202ENST00000611852 CKAP2LQ8IYA6 745 aa18.6■□□□□ 0.57
CCDC28A-202ENST00000611852 BANK1Q8NDB2 785 aa18.6■□□□□ 0.57
CCDC28A-202ENST00000611852 BBXQ8WY36 941 aaPredicted RBP18.6■□□□□ 0.57
CCDC28A-202ENST00000611852 TNPO1Q92973 898 aaKnown RBP18.6■□□□□ 0.57
CCDC28A-202ENST00000611852 HIPK3Q9H422 1215 aa18.6■□□□□ 0.57
CCDC28A-202ENST00000611852 ZSCAN16Q9H4T2 348 aaPredicted RBP18.6■□□□□ 0.57
CCDC28A-202ENST00000611852 LTBP2Q14767 1821 aa18.6■□□□□ 0.57
CCDC28A-202ENST00000611852 POTEMA6NI47 508 aa18.59■□□□□ 0.57
CCDC28A-202ENST00000611852 HBP1O60381 514 aa18.59■□□□□ 0.57
CCDC28A-202ENST00000611852 TECP42680 631 aa18.59■□□□□ 0.57
CCDC28A-202ENST00000611852 PTK7Q13308 1070 aa18.59■□□□□ 0.57
CCDC28A-202ENST00000611852 MARCH8Q5T0T0 291 aa18.59■□□□□ 0.57
CCDC28A-202ENST00000611852 FAM173BQ6P4H8 233 aa18.59■□□□□ 0.57
CCDC28A-202ENST00000611852 TRMT1LQ7Z2T5 733 aaKnown RBP18.59■□□□□ 0.57
CCDC28A-202ENST00000611852 SERINC5Q86VE9 423 aa18.59■□□□□ 0.57
CCDC28A-202ENST00000611852 DHX38Q92620 1227 aaKnown RBP18.59■□□□□ 0.57
CCDC28A-202ENST00000611852 FAM167AQ96KS9 214 aa18.59■□□□□ 0.57
CCDC28A-202ENST00000611852 PPP1R12CQ9BZL4 782 aa18.59■□□□□ 0.57
CCDC28A-202ENST00000611852 MBLAC1A4D2B0 266 aaPredicted RBP18.59■□□□□ 0.57
CCDC28A-202ENST00000611852 RRN3P2A6NIE6 340 aa18.59■□□□□ 0.57
CCDC28A-202ENST00000611852 OATP04181 439 aa18.59■□□□□ 0.57
CCDC28A-202ENST00000611852 P4HBP07237 508 aaKnown RBP18.59■□□□□ 0.57
CCDC28A-202ENST00000611852 PRPHP41219 470 aa18.59■□□□□ 0.57
CCDC28A-202ENST00000611852 QARSP47897 775 aaKnown RBP18.59■□□□□ 0.57
CCDC28A-202ENST00000611852 PSMC5P62195 406 aa18.59■□□□□ 0.57
CCDC28A-202ENST00000611852 IGBP1P78318 339 aa18.59■□□□□ 0.57
CCDC28A-202ENST00000611852 ATP2C1P98194 919 aaPredicted RBP18.59■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms