RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 MCM2P49736 904 aa18.35■□□□□ 0.53
LSM4-206ENST00000600289 ACTR2P61160 394 aa18.35■□□□□ 0.53
LSM4-206ENST00000600289 HMGN5P82970 282 aaKnown RBP18.35■□□□□ 0.53
LSM4-206ENST00000600289 SP4Q02446 784 aa18.35■□□□□ 0.53
LSM4-206ENST00000600289 ADGRE1Q14246 886 aa18.35■□□□□ 0.53
LSM4-206ENST00000600289 TRIM50Q86XT4 487 aa18.35■□□□□ 0.53
LSM4-206ENST00000600289 PPP1R13LQ8WUF5 828 aa18.35■□□□□ 0.53
LSM4-206ENST00000600289 TNFRSF25Q93038 417 aa18.35■□□□□ 0.53
LSM4-206ENST00000600289 TIFAQ96CG3 184 aa18.35■□□□□ 0.53
LSM4-206ENST00000600289 GAS2L1Q99501 681 aaPredicted RBP18.35■□□□□ 0.53
LSM4-206ENST00000600289 ZNF577Q9BSK1 485 aa18.35■□□□□ 0.53
LSM4-206ENST00000600289 SMARCAD1Q9H4L7 1026 aa18.35■□□□□ 0.53
LSM4-206ENST00000600289 GJB4Q9NTQ9 266 aa18.35■□□□□ 0.53
LSM4-206ENST00000600289 ERAP1Q9NZ08 941 aa18.35■□□□□ 0.53
LSM4-206ENST00000600289 NOD1Q9Y239 953 aa18.35■□□□□ 0.53
LSM4-206ENST00000600289 HSFX4A0A1B0GTS1 333 aaPredicted RBP18.34■□□□□ 0.53
LSM4-206ENST00000600289 CCDC194A0A1B0GVG4 234 aa18.34■□□□□ 0.53
LSM4-206ENST00000600289 HSFX3A0A1B0GWH4 333 aaPredicted RBP18.34■□□□□ 0.53
LSM4-206ENST00000600289 SMIM10L2AP0DMW4 78 aa18.34■□□□□ 0.53
LSM4-206ENST00000600289 SMIM10L2BP0DMW5 78 aa18.34■□□□□ 0.53
LSM4-206ENST00000600289 CYP2C9P11712 490 aa18.34■□□□□ 0.53
LSM4-206ENST00000600289 BMP1P13497 986 aa18.34■□□□□ 0.53
LSM4-206ENST00000600289 KRT2P35908 639 aa18.34■□□□□ 0.53
LSM4-206ENST00000600289 CHMP4BP1P59074 171 aa18.34■□□□□ 0.53
LSM4-206ENST00000600289 PTK7Q13308 1070 aa18.34■□□□□ 0.53
LSM4-206ENST00000600289 BFSP2Q13515 415 aa18.34■□□□□ 0.53
LSM4-206ENST00000600289 PRR16Q569H4 304 aa18.34■□□□□ 0.53
LSM4-206ENST00000600289 UTP14CQ5TAP6 766 aaKnown RBP18.34■□□□□ 0.53
LSM4-206ENST00000600289 ZNF746Q6NUN9 644 aaPredicted RBP18.34■□□□□ 0.53
LSM4-206ENST00000600289 PLPPR4Q7Z2D5 763 aa18.34■□□□□ 0.53
LSM4-206ENST00000600289 ALYREFQ86V81 257 aaKnown RBP18.34■□□□□ 0.53
LSM4-206ENST00000600289 AFAP1L1Q8TED9 768 aa18.34■□□□□ 0.53
LSM4-206ENST00000600289 PRDM12Q9H4Q4 367 aa18.34■□□□□ 0.53
LSM4-206ENST00000600289 EPHX3Q9H6B9 360 aa18.34■□□□□ 0.53
LSM4-206ENST00000600289 BRMS1Q9HCU9 246 aa18.34■□□□□ 0.53
LSM4-206ENST00000600289 C17orf102A2RUQ5 167 aa18.33■□□□□ 0.52
LSM4-206ENST00000600289 DTNBO60941 627 aa18.33■□□□□ 0.52
LSM4-206ENST00000600289 CCNE2O96020 404 aa18.33■□□□□ 0.52
LSM4-206ENST00000600289 CSF2RAP15509 400 aa18.33■□□□□ 0.52
LSM4-206ENST00000600289 RFC2P35250 354 aa18.33■□□□□ 0.52
LSM4-206ENST00000600289 SLC26A2P50443 739 aa18.33■□□□□ 0.52
LSM4-206ENST00000600289 ADAM17P78536 824 aa18.33■□□□□ 0.52
LSM4-206ENST00000600289 KRT76Q01546 638 aa18.33■□□□□ 0.52
LSM4-206ENST00000600289 TRIM29Q14134 588 aa18.33■□□□□ 0.52
LSM4-206ENST00000600289 HIC1Q14526 733 aa18.33■□□□□ 0.52
LSM4-206ENST00000600289 PPP4R3AQ6IN85 833 aa18.33■□□□□ 0.52
LSM4-206ENST00000600289 PSRC1Q6PGN9 363 aaPredicted RBP18.33■□□□□ 0.52
LSM4-206ENST00000600289 ABHD15Q6UXT9 468 aa18.33■□□□□ 0.52
LSM4-206ENST00000600289 SERINC5Q86VE9 423 aa18.33■□□□□ 0.52
LSM4-206ENST00000600289 SMAP1Q8IYB5 467 aaPredicted RBP18.33■□□□□ 0.52
LSM4-206ENST00000600289 OXER1Q8TDS5 423 aa18.33■□□□□ 0.52
LSM4-206ENST00000600289 DHX38Q92620 1227 aaKnown RBP18.33■□□□□ 0.52
LSM4-206ENST00000600289 SLC5A5Q92911 643 aa18.33■□□□□ 0.52
LSM4-206ENST00000600289 PCYT2Q99447 389 aa18.33■□□□□ 0.52
LSM4-206ENST00000600289 RIT2Q99578 217 aa18.33■□□□□ 0.52
LSM4-206ENST00000600289 NAP1L4Q99733 375 aaKnown RBP18.33■□□□□ 0.52
LSM4-206ENST00000600289 IL23AQ9NPF7 189 aa18.33■□□□□ 0.52
LSM4-206ENST00000600289 NRCAMQ92823 1304 aa18.32■□□□□ 0.52
LSM4-206ENST00000600289 MSH4O15457 936 aa18.32■□□□□ 0.52
LSM4-206ENST00000600289 PFKMP08237 780 aa18.32■□□□□ 0.52
LSM4-206ENST00000600289 GNAT1P11488 350 aa18.32■□□□□ 0.52
LSM4-206ENST00000600289 GCFC2P16383 781 aaKnown RBP18.32■□□□□ 0.52
LSM4-206ENST00000600289 CCDC85BQ15834 202 aaPredicted RBP18.32■□□□□ 0.52
LSM4-206ENST00000600289 INF2Q27J81 1249 aa18.32■□□□□ 0.52
LSM4-206ENST00000600289 TRIM71Q2Q1W2 868 aaKnown RBP18.32■□□□□ 0.52
LSM4-206ENST00000600289 KRT40Q6A162 431 aa18.32■□□□□ 0.52
LSM4-206ENST00000600289 NEK8Q86SG6 692 aa18.32■□□□□ 0.52
LSM4-206ENST00000600289 RNPEPQ9H4A4 650 aa18.32■□□□□ 0.52
LSM4-206ENST00000600289 AZI2Q9H6S1 392 aa18.32■□□□□ 0.52
LSM4-206ENST00000600289 CAND2O75155 1236 aa18.31■□□□□ 0.52
LSM4-206ENST00000600289 PARNO95453 639 aaKnown RBP18.31■□□□□ 0.52
LSM4-206ENST00000600289 TDP2O95551 362 aa18.31■□□□□ 0.52
LSM4-206ENST00000600289 IQCF3P0C7M6 154 aa18.31■□□□□ 0.52
LSM4-206ENST00000600289 PBX2P40425 430 aa18.31■□□□□ 0.52
LSM4-206ENST00000600289 C16orf59Q7L2K0 433 aa18.31■□□□□ 0.52
LSM4-206ENST00000600289 DIS3L2Q8IYB7 885 aaKnown RBP18.31■□□□□ 0.52
LSM4-206ENST00000600289 RPUSD2Q8IZ73 545 aaKnown RBP18.31■□□□□ 0.52
LSM4-206ENST00000600289 RETREG2Q8NC44 543 aa18.31■□□□□ 0.52
LSM4-206ENST00000600289 ETNPPLQ8TBG4 499 aa18.31■□□□□ 0.52
LSM4-206ENST00000600289 GLG1Q92896 1179 aa18.31■□□□□ 0.52
LSM4-206ENST00000600289 TNPO1Q92973 898 aaKnown RBP18.31■□□□□ 0.52
LSM4-206ENST00000600289 TCEAL9Q9UHQ7 104 aa18.31■□□□□ 0.52
LSM4-206ENST00000600289 PTPRSQ13332 1948 aa18.3■□□□□ 0.52
LSM4-206ENST00000600289 CD2BP2O95400 341 aaKnown RBP18.3■□□□□ 0.52
LSM4-206ENST00000600289 STAT5BP51692 787 aa18.3■□□□□ 0.52
LSM4-206ENST00000600289 CCL23P55773 120 aa18.3■□□□□ 0.52
LSM4-206ENST00000600289 NR5A1Q13285 461 aa18.3■□□□□ 0.52
LSM4-206ENST00000600289 TMEM240Q5SV17 173 aa18.3■□□□□ 0.52
LSM4-206ENST00000600289 RASIP1Q5U651 963 aa18.3■□□□□ 0.52
LSM4-206ENST00000600289 FAM160B1Q5W0V3 765 aa18.3■□□□□ 0.52
LSM4-206ENST00000600289 MIS18BP1Q6P0N0 1132 aa18.3■□□□□ 0.52
LSM4-206ENST00000600289 B3GNT9Q6UX72 402 aa18.3■□□□□ 0.52
LSM4-206ENST00000600289 PIK3AP1Q6ZUJ8 805 aa18.3■□□□□ 0.52
LSM4-206ENST00000600289 LMBR1Q8WVP7 490 aa18.3■□□□□ 0.52
LSM4-206ENST00000600289 ATP6V0A1Q93050 837 aa18.3■□□□□ 0.52
LSM4-206ENST00000600289 VWCEQ96DN2 955 aa18.3■□□□□ 0.52
LSM4-206ENST00000600289 TMX3Q96JJ7 454 aa18.3■□□□□ 0.52
LSM4-206ENST00000600289 BUD13Q9BRD0 619 aaKnown RBP eCLIP18.3■□□□□ 0.52
LSM4-206ENST00000600289 PBX4Q9BYU1 374 aa18.3■□□□□ 0.52
LSM4-206ENST00000600289 C11orf16Q9NQ32 467 aa18.3■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms