RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 KCNMB3Q9NPA1 279 aa17.2■□□□□ 0.34
LIG1-219ENST00000600055 TCEAL9Q9UHQ7 104 aa17.2■□□□□ 0.34
LIG1-219ENST00000600055 SMC3Q9UQE7 1217 aa17.2■□□□□ 0.34
LIG1-219ENST00000600055 SAMM50Q9Y512 469 aa17.2■□□□□ 0.34
LIG1-219ENST00000600055 ACRP10323 421 aa17.19■□□□□ 0.34
LIG1-219ENST00000600055 ADAM17P78536 824 aa17.19■□□□□ 0.34
LIG1-219ENST00000600055 PPFIA1Q13136 1202 aa17.19■□□□□ 0.34
LIG1-219ENST00000600055 PTK7Q13308 1070 aa17.19■□□□□ 0.34
LIG1-219ENST00000600055 SHHQ15465 462 aa17.19■□□□□ 0.34
LIG1-219ENST00000600055 TRIM71Q2Q1W2 868 aaKnown RBP17.19■□□□□ 0.34
LIG1-219ENST00000600055 C16orf59Q7L2K0 433 aa17.19■□□□□ 0.34
LIG1-219ENST00000600055 SMAP1Q8IYB5 467 aaPredicted RBP17.19■□□□□ 0.34
LIG1-219ENST00000600055 TDHQ8IZJ6 230 aa17.19■□□□□ 0.34
LIG1-219ENST00000600055 HAS1Q92839 578 aa17.19■□□□□ 0.34
LIG1-219ENST00000600055 ZBTB10Q96DT7 871 aa17.19■□□□□ 0.34
LIG1-219ENST00000600055 FOXP1Q9H334 677 aaPredicted RBP17.19■□□□□ 0.34
LIG1-219ENST00000600055 ZNF302Q9NR11 478 aa17.19■□□□□ 0.34
LIG1-219ENST00000600055 DISC1Q9NRI5 854 aa17.19■□□□□ 0.34
LIG1-219ENST00000600055 ZSCAN21Q9Y5A6 473 aaPredicted RBP17.19■□□□□ 0.34
LIG1-219ENST00000600055 PCDHA10Q9Y5I2 948 aa17.19■□□□□ 0.34
LIG1-219ENST00000600055 PSAPP07602 524 aa17.18■□□□□ 0.34
LIG1-219ENST00000600055 INSRRP14616 1297 aa17.18■□□□□ 0.34
LIG1-219ENST00000600055 ATP4AP20648 1035 aa17.18■□□□□ 0.34
LIG1-219ENST00000600055 IGBP1P78318 339 aa17.18■□□□□ 0.34
LIG1-219ENST00000600055 PPIGQ13427 754 aaKnown RBP eCLIP17.18■□□□□ 0.348e-8■■■□□ 15.3
LIG1-219ENST00000600055 BFSP2Q13515 415 aa17.18■□□□□ 0.34
LIG1-219ENST00000600055 GNL2Q13823 731 aaKnown RBP17.18■□□□□ 0.34
LIG1-219ENST00000600055 GRIK4Q16099 956 aa17.18■□□□□ 0.34
LIG1-219ENST00000600055 FAM160B1Q5W0V3 765 aa17.18■□□□□ 0.34
LIG1-219ENST00000600055 PDXDC2PQ6P474 469 aa17.18■□□□□ 0.34
LIG1-219ENST00000600055 B3GNT9Q6UX72 402 aa17.18■□□□□ 0.34
LIG1-219ENST00000600055 SERINC5Q86VE9 423 aa17.18■□□□□ 0.34
LIG1-219ENST00000600055 RETREG2Q8NC44 543 aa17.18■□□□□ 0.34
LIG1-219ENST00000600055 AFAP1L1Q8TED9 768 aa17.18■□□□□ 0.34
LIG1-219ENST00000600055 VWCEQ96DN2 955 aa17.18■□□□□ 0.34
LIG1-219ENST00000600055 NAP1L4Q99733 375 aaKnown RBP17.18■□□□□ 0.34
LIG1-219ENST00000600055 GABBR1Q9UBS5 961 aa17.18■□□□□ 0.34
LIG1-219ENST00000600055 TRPC6Q9Y210 931 aa17.18■□□□□ 0.34
LIG1-219ENST00000600055 KIF3AQ9Y496 699 aa17.18■□□□□ 0.34
LIG1-219ENST00000600055 NRCAMQ92823 1304 aa17.18■□□□□ 0.34
LIG1-219ENST00000600055 POTEB3A0JP26 581 aa17.17■□□□□ 0.34
LIG1-219ENST00000600055 WDR64B1ANS9 1081 aa17.17■□□□□ 0.34
LIG1-219ENST00000600055 PITPNM1O00562 1244 aa17.17■□□□□ 0.34
LIG1-219ENST00000600055 IQCF3P0C7M6 154 aa17.17■□□□□ 0.34
LIG1-219ENST00000600055 GNAT1P11488 350 aa17.17■□□□□ 0.34
LIG1-219ENST00000600055 CKBP12277 381 aa17.17■□□□□ 0.34
LIG1-219ENST00000600055 UGCGQ16739 394 aa17.17■□□□□ 0.34
LIG1-219ENST00000600055 MARCH8Q5T0T0 291 aa17.17■□□□□ 0.34
LIG1-219ENST00000600055 POTEBQ6S5H4 581 aa17.17■□□□□ 0.34
LIG1-219ENST00000600055 RUFY4Q6ZNE9 571 aa17.17■□□□□ 0.34
LIG1-219ENST00000600055 TRMT1LQ7Z2T5 733 aaKnown RBP17.17■□□□□ 0.34
LIG1-219ENST00000600055 MIER3Q7Z3K6 550 aa17.17■□□□□ 0.34
LIG1-219ENST00000600055 NOSTRINQ8IVI9 506 aa17.17■□□□□ 0.34
LIG1-219ENST00000600055 CAGE1Q8TC20 777 aa17.17■□□□□ 0.34
LIG1-219ENST00000600055 TRAPPC12Q8WVT3 735 aa17.17■□□□□ 0.34
LIG1-219ENST00000600055 FAM20AQ96MK3 541 aa17.17■□□□□ 0.34
LIG1-219ENST00000600055 BUD13Q9BRD0 619 aaKnown RBP eCLIP17.17■□□□□ 0.344e-7■■■■■ 33
LIG1-219ENST00000600055 IL23AQ9NPF7 189 aa17.17■□□□□ 0.34
LIG1-219ENST00000600055 VAV3Q9UKW4 847 aa17.17■□□□□ 0.34
LIG1-219ENST00000600055 MAFBQ9Y5Q3 323 aaPredicted RBP17.17■□□□□ 0.34
LIG1-219ENST00000600055 A0A1W2PPC1 479 aa17.16■□□□□ 0.34
LIG1-219ENST00000600055 K7ELQ4 463 aaPredicted RBP17.16■□□□□ 0.34
LIG1-219ENST00000600055 EML1O00423 815 aa17.16■□□□□ 0.34
LIG1-219ENST00000600055 MARCH6O60337 910 aa17.16■□□□□ 0.34
LIG1-219ENST00000600055 U2AF2P26368 475 aaKnown RBP eCLIP17.16■□□□□ 0.34
LIG1-219ENST00000600055 MCM7P33993 719 aa17.16■□□□□ 0.34
LIG1-219ENST00000600055 JAK3P52333 1124 aa17.16■□□□□ 0.34
LIG1-219ENST00000600055 RBL2Q08999 1139 aa17.16■□□□□ 0.34
LIG1-219ENST00000600055 TMEM240Q5SV17 173 aa17.16■□□□□ 0.34
LIG1-219ENST00000600055 ZNF618Q5T7W0 954 aa17.16■□□□□ 0.34
LIG1-219ENST00000600055 TRAF7Q6Q0C0 670 aa17.16■□□□□ 0.34
LIG1-219ENST00000600055 DEFB128Q7Z7B8 93 aa17.16■□□□□ 0.34
LIG1-219ENST00000600055 CCDC155Q8N6L0 562 aa17.16■□□□□ 0.34
LIG1-219ENST00000600055 ATP8B4Q8TF62 1192 aa17.16■□□□□ 0.34
LIG1-219ENST00000600055 TMEM60Q9H2L4 133 aa17.16■□□□□ 0.34
LIG1-219ENST00000600055 FOXD4L1Q9NU39 408 aa17.16■□□□□ 0.34
LIG1-219ENST00000600055 TBX3O15119 743 aa17.15■□□□□ 0.34
LIG1-219ENST00000600055 ZNF862O60290 1169 aa17.15■□□□□ 0.34
LIG1-219ENST00000600055 SELPP16109 830 aa17.15■□□□□ 0.34
LIG1-219ENST00000600055 SFNP31947 248 aa17.15■□□□□ 0.34
LIG1-219ENST00000600055 THPOP40225 353 aa17.15■□□□□ 0.34
LIG1-219ENST00000600055 SLC26A2P50443 739 aa17.15■□□□□ 0.34
LIG1-219ENST00000600055 NBR1Q14596 966 aa17.15■□□□□ 0.34
LIG1-219ENST00000600055 GPNMBQ14956 572 aa17.15■□□□□ 0.34
LIG1-219ENST00000600055 ZNF174Q15697 407 aa17.15■□□□□ 0.34
LIG1-219ENST00000600055 CALCRLQ16602 461 aa17.15■□□□□ 0.34
LIG1-219ENST00000600055 LARP1BQ659C4 914 aaKnown RBP17.15■□□□□ 0.34
LIG1-219ENST00000600055 MCTP1Q6DN14 999 aa17.15■□□□□ 0.34
LIG1-219ENST00000600055 ZNF365Q70YC5 407 aa17.15■□□□□ 0.34
LIG1-219ENST00000600055 LRRC8DQ7L1W4 858 aa17.15■□□□□ 0.34
LIG1-219ENST00000600055 CKAP2LQ8IYA6 745 aa17.15■□□□□ 0.34
LIG1-219ENST00000600055 SNX21Q969T3 373 aa17.15■□□□□ 0.34
LIG1-219ENST00000600055 IGSF9BQ9UPX0 1349 aa17.15■□□□□ 0.34
LIG1-219ENST00000600055 MBLAC1A4D2B0 266 aaPredicted RBP17.14■□□□□ 0.33
LIG1-219ENST00000600055 RRN3P2A6NIE6 340 aa17.14■□□□□ 0.33
LIG1-219ENST00000600055 H3BQV1 296 aa17.14■□□□□ 0.33
LIG1-219ENST00000600055 SOX1O00570 391 aaPredicted RBP17.14■□□□□ 0.33
LIG1-219ENST00000600055 HBP1O60381 514 aa17.14■□□□□ 0.33
LIG1-219ENST00000600055 NEMFO60524 1076 aa17.14■□□□□ 0.33
LIG1-219ENST00000600055 BAG4O95429 457 aaKnown RBP17.14■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms