RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 H3BNC9 293 aa9.99□□□□□ -0.81
SHKBP1-220ENST00000599716 GRM6O15303 877 aa9.99□□□□□ -0.81
SHKBP1-220ENST00000599716 LINC01565O15544 149 aa9.99□□□□□ -0.81
SHKBP1-220ENST00000599716 ATP9AO75110 1047 aa9.99□□□□□ -0.81
SHKBP1-220ENST00000599716 CHRNA1P02708 482 aa9.99□□□□□ -0.81
SHKBP1-220ENST00000599716 RXRAP19793 462 aa9.99□□□□□ -0.81
SHKBP1-220ENST00000599716 CTNNB1P35222 781 aa9.99□□□□□ -0.81
SHKBP1-220ENST00000599716 ANTXR2P58335 489 aa9.99□□□□□ -0.81
SHKBP1-220ENST00000599716 ACAP1Q15027 740 aa9.99□□□□□ -0.81
SHKBP1-220ENST00000599716 DGLUCYQ7Z3D6 616 aa9.99□□□□□ -0.81
SHKBP1-220ENST00000599716 NEK9Q8TD19 979 aa9.99□□□□□ -0.81
SHKBP1-220ENST00000599716 PBXIP1Q96AQ6 731 aa9.99□□□□□ -0.81
SHKBP1-220ENST00000599716 INPP4AQ96PE3 977 aaPredicted RBP9.99□□□□□ -0.81
SHKBP1-220ENST00000599716 CTNNA3Q9UI47 895 aa9.99□□□□□ -0.81
SHKBP1-220ENST00000599716 FAM50BQ9Y247 325 aa9.99□□□□□ -0.81
SHKBP1-220ENST00000599716 COL4A6Q14031 1691 aa9.99□□□□□ -0.81
SHKBP1-220ENST00000599716 PNMA6FA0A0J9YX94 578 aa9.98□□□□□ -0.81
SHKBP1-220ENST00000599716 E7EWF7 191 aa9.98□□□□□ -0.81
SHKBP1-220ENST00000599716 LINC00271P0C7V0 271 aa9.98□□□□□ -0.81
SHKBP1-220ENST00000599716 LTBRP36941 435 aa9.98□□□□□ -0.81
SHKBP1-220ENST00000599716 IGBP1P78318 339 aa9.98□□□□□ -0.81
SHKBP1-220ENST00000599716 TROAPQ12815 778 aa9.98□□□□□ -0.81
SHKBP1-220ENST00000599716 WTAPQ15007 396 aa9.98□□□□□ -0.81
SHKBP1-220ENST00000599716 UBE2SQ16763 222 aa9.98□□□□□ -0.81
SHKBP1-220ENST00000599716 KCNV1Q6PIU1 500 aa9.98□□□□□ -0.81
SHKBP1-220ENST00000599716 METTL7BQ6UX53 244 aa9.98□□□□□ -0.81
SHKBP1-220ENST00000599716 RPAINQ86UA6 219 aa9.98□□□□□ -0.81
SHKBP1-220ENST00000599716 TICAM2Q86XR7 235 aa9.98□□□□□ -0.81
SHKBP1-220ENST00000599716 ADHFE1Q8IWW8 467 aa9.98□□□□□ -0.81
SHKBP1-220ENST00000599716 EDAQ92838 391 aa9.98□□□□□ -0.81
SHKBP1-220ENST00000599716 IGFLR1Q9H665 355 aa9.98□□□□□ -0.81
SHKBP1-220ENST00000599716 ZZEF1O43149 2961 aa9.98□□□□□ -0.81
SHKBP1-220ENST00000599716 KIAA1671Q9BY89 1806 aa9.98□□□□□ -0.81
SHKBP1-220ENST00000599716 LOXHD1Q8IVV2 1947 aa9.97□□□□□ -0.81
SHKBP1-220ENST00000599716 TMEM221A6NGB7 291 aa9.97□□□□□ -0.81
SHKBP1-220ENST00000599716 M0R296 226 aa9.97□□□□□ -0.81
SHKBP1-220ENST00000599716 HIP1O00291 1037 aa9.97□□□□□ -0.81
SHKBP1-220ENST00000599716 FIBPO43427 364 aa9.97□□□□□ -0.81
SHKBP1-220ENST00000599716 PLEKHA8P1O95397 391 aa9.97□□□□□ -0.81
SHKBP1-220ENST00000599716 TGFB3P10600 412 aa9.97□□□□□ -0.81
SHKBP1-220ENST00000599716 ICAM3P32942 547 aa9.97□□□□□ -0.81
SHKBP1-220ENST00000599716 TCF7P36402 384 aaPredicted RBP9.97□□□□□ -0.81
SHKBP1-220ENST00000599716 GATMP50440 423 aa9.97□□□□□ -0.81
SHKBP1-220ENST00000599716 FXR2P51116 673 aaKnown RBP eCLIP9.97□□□□□ -0.81
SHKBP1-220ENST00000599716 ADAM17P78536 824 aa9.97□□□□□ -0.81
SHKBP1-220ENST00000599716 TMEM62Q0P6H9 643 aa9.97□□□□□ -0.81
SHKBP1-220ENST00000599716 HYAL1Q12794 435 aa9.97□□□□□ -0.81
SHKBP1-220ENST00000599716 TRDNQ13061 729 aa9.97□□□□□ -0.81
SHKBP1-220ENST00000599716 LPIN1Q14693 890 aa9.97□□□□□ -0.81
SHKBP1-220ENST00000599716 PTPROQ16827 1216 aa9.97□□□□□ -0.81
SHKBP1-220ENST00000599716 GNPTABQ3T906 1256 aa9.97□□□□□ -0.81
SHKBP1-220ENST00000599716 PAN2Q504Q3 1202 aaKnown RBP9.97□□□□□ -0.81
SHKBP1-220ENST00000599716 TIGD5Q53EQ6 642 aa9.97□□□□□ -0.81
SHKBP1-220ENST00000599716 FBXL6Q8N531 539 aa9.97□□□□□ -0.81
SHKBP1-220ENST00000599716 FIBCD1Q8N539 461 aa9.97□□□□□ -0.81
SHKBP1-220ENST00000599716 SMARCC2Q8TAQ2 1214 aa9.97□□□□□ -0.81
SHKBP1-220ENST00000599716 TRAPPC12Q8WVT3 735 aa9.97□□□□□ -0.81
SHKBP1-220ENST00000599716 DNAJB3Q8WWF6 145 aa9.97□□□□□ -0.81
SHKBP1-220ENST00000599716 LINC01599Q8WXQ3 324 aa9.97□□□□□ -0.81
SHKBP1-220ENST00000599716 PABPC5Q96DU9 382 aaKnown RBP9.97□□□□□ -0.81
SHKBP1-220ENST00000599716 IL17RAQ96F46 866 aa9.97□□□□□ -0.81
SHKBP1-220ENST00000599716 USP26Q9BXU7 913 aa9.97□□□□□ -0.81
SHKBP1-220ENST00000599716 MAF1Q9H063 256 aa9.97□□□□□ -0.81
SHKBP1-220ENST00000599716 FAM49AQ9H0Q0 323 aaPredicted RBP9.97□□□□□ -0.81
SHKBP1-220ENST00000599716 NSUN3Q9H649 340 aaKnown RBP9.97□□□□□ -0.81
SHKBP1-220ENST00000599716 MUTYHQ9UIF7 546 aa9.97□□□□□ -0.81
SHKBP1-220ENST00000599716 PCDHGC5Q9Y5F6 944 aa9.97□□□□□ -0.81
SHKBP1-220ENST00000599716 FRMPD4Q14CM0 1322 aa9.97□□□□□ -0.81
SHKBP1-220ENST00000599716 RALGAPA2Q2PPJ7 1873 aa9.97□□□□□ -0.81
SHKBP1-220ENST00000599716 GSTTP1A0A1W2PQM5 241 aa9.96□□□□□ -0.82
SHKBP1-220ENST00000599716 MEIS2O14770 477 aa9.96□□□□□ -0.82
SHKBP1-220ENST00000599716 TBX10O75333 385 aa9.96□□□□□ -0.82
SHKBP1-220ENST00000599716 DNAJB1P25685 340 aa9.96□□□□□ -0.82
SHKBP1-220ENST00000599716 CD52P31358 61 aa9.96□□□□□ -0.82
SHKBP1-220ENST00000599716 IRS1P35568 1242 aa9.96□□□□□ -0.82
SHKBP1-220ENST00000599716 NBL1P41271 181 aa9.96□□□□□ -0.82
SHKBP1-220ENST00000599716 MGAT3Q09327 533 aa9.96□□□□□ -0.82
SHKBP1-220ENST00000599716 PPFIA1Q13136 1202 aa9.96□□□□□ -0.82
SHKBP1-220ENST00000599716 NEDD9Q14511 834 aa9.96□□□□□ -0.82
SHKBP1-220ENST00000599716 FAM26DQ5JW98 314 aa9.96□□□□□ -0.82
SHKBP1-220ENST00000599716 TTC22Q5TAA0 569 aa9.96□□□□□ -0.82
SHKBP1-220ENST00000599716 TRIM67Q6ZTA4 783 aa9.96□□□□□ -0.82
SHKBP1-220ENST00000599716 RALYLQ86SE5 291 aaKnown RBP9.96□□□□□ -0.82
SHKBP1-220ENST00000599716 CCDC82Q8N4S0 544 aa9.96□□□□□ -0.82
SHKBP1-220ENST00000599716 IGDCC4Q8TDY8 1250 aa9.96□□□□□ -0.82
SHKBP1-220ENST00000599716 PGBD1Q96JS3 809 aa9.96□□□□□ -0.82
SHKBP1-220ENST00000599716 AGO3Q9H9G7 860 aaKnown RBP9.96□□□□□ -0.82
SHKBP1-220ENST00000599716 MAP3K20Q9NYL2 800 aaKnown RBP9.96□□□□□ -0.82
SHKBP1-220ENST00000599716 CDY2AQ9Y6F7 541 aa9.96□□□□□ -0.82
SHKBP1-220ENST00000599716 ERICH2A1L162 156 aa9.95□□□□□ -0.82
SHKBP1-220ENST00000599716 ENPP3O14638 875 aa9.95□□□□□ -0.82
SHKBP1-220ENST00000599716 KCNA2P16389 499 aa9.95□□□□□ -0.82
SHKBP1-220ENST00000599716 ITGB5P18084 799 aa9.95□□□□□ -0.82
SHKBP1-220ENST00000599716 CHMLP26374 656 aa9.95□□□□□ -0.82
SHKBP1-220ENST00000599716 BMPR1AP36894 532 aa9.95□□□□□ -0.82
SHKBP1-220ENST00000599716 NUBP1P53384 320 aa9.95□□□□□ -0.82
SHKBP1-220ENST00000599716 IRX6P78412 446 aaPredicted RBP9.95□□□□□ -0.82
SHKBP1-220ENST00000599716 RBM10P98175 930 aaKnown RBP9.95□□□□□ -0.82
SHKBP1-220ENST00000599716 CAMK1Q14012 370 aa9.95□□□□□ -0.82
SHKBP1-220ENST00000599716 BTG3Q14201 252 aaPredicted RBP9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms