RNA–Protein interactions for RNA: ENST00000589753.1

ATG4D-211, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4D, Length 931 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-211ENST00000589753 CMA1P23946 247 aa17.03■□□□□ 0.32
ATG4D-211ENST00000589753 RPA1P27694 616 aa17.03■□□□□ 0.32
ATG4D-211ENST00000589753 CST5P28325 142 aaPredicted RBP17.03■□□□□ 0.32
ATG4D-211ENST00000589753 TXLNAP40222 546 aa17.03■□□□□ 0.32
ATG4D-211ENST00000589753 CCT6AP40227 531 aaKnown RBP17.03■□□□□ 0.32
ATG4D-211ENST00000589753 CYP4A11Q02928 519 aa17.03■□□□□ 0.32
ATG4D-211ENST00000589753 FAM160B1Q5W0V3 765 aa17.03■□□□□ 0.32
ATG4D-211ENST00000589753 RESP18Q5W5W9 173 aa17.03■□□□□ 0.32
ATG4D-211ENST00000589753 USP49Q70CQ1 688 aa17.03■□□□□ 0.32
ATG4D-211ENST00000589753 CCDC60Q8IWA6 550 aaPredicted RBP17.03■□□□□ 0.32
ATG4D-211ENST00000589753 ARRDC4Q8NCT1 418 aa17.03■□□□□ 0.32
ATG4D-211ENST00000589753 KLHDC9Q8NEP7 349 aa17.03■□□□□ 0.32
ATG4D-211ENST00000589753 ATP6V0A1Q93050 837 aa17.03■□□□□ 0.32
ATG4D-211ENST00000589753 PCYT2Q99447 389 aa17.03■□□□□ 0.32
ATG4D-211ENST00000589753 MMTAG2Q9BU76 263 aaKnown RBP17.03■□□□□ 0.32
ATG4D-211ENST00000589753 CCSER1Q9C0I3 900 aa17.03■□□□□ 0.32
ATG4D-211ENST00000589753 TUFT1Q9NNX1 390 aa17.03■□□□□ 0.32
ATG4D-211ENST00000589753 FAM13BQ9NYF5 915 aa17.03■□□□□ 0.32
ATG4D-211ENST00000589753 RGL1Q9NZL6 768 aa17.03■□□□□ 0.32
ATG4D-211ENST00000589753 HTTP42858 3142 aa17.03■□□□□ 0.32
ATG4D-211ENST00000589753 KDM3AQ9Y4C1 1321 aa17.02■□□□□ 0.32
ATG4D-211ENST00000589753 SLC26A4O43511 780 aa17.02■□□□□ 0.32
ATG4D-211ENST00000589753 KPNA6O60684 536 aa17.02■□□□□ 0.32
ATG4D-211ENST00000589753 DKC1O60832 514 aaKnown RBP eCLIP17.02■□□□□ 0.32
ATG4D-211ENST00000589753 MED24O75448 989 aa17.02■□□□□ 0.32
ATG4D-211ENST00000589753 GJB1P08034 283 aa17.02■□□□□ 0.32
ATG4D-211ENST00000589753 MYL3P08590 195 aa17.02■□□□□ 0.32
ATG4D-211ENST00000589753 SPATA31C1P0DKV0 1188 aa17.02■□□□□ 0.32
ATG4D-211ENST00000589753 QARSP47897 775 aaKnown RBP17.02■□□□□ 0.32
ATG4D-211ENST00000589753 STAT5BP51692 787 aa17.02■□□□□ 0.32
ATG4D-211ENST00000589753 PSMC5P62195 406 aa17.02■□□□□ 0.32
ATG4D-211ENST00000589753 CTTNQ14247 550 aaKnown RBP17.02■□□□□ 0.32
ATG4D-211ENST00000589753 LRRC41Q15345 812 aa17.02■□□□□ 0.32
ATG4D-211ENST00000589753 CATSPER3Q86XQ3 398 aa17.02■□□□□ 0.32
ATG4D-211ENST00000589753 TPH2Q8IWU9 490 aa17.02■□□□□ 0.32
ATG4D-211ENST00000589753 PCSK9Q8NBP7 692 aaKnown RBP17.02■□□□□ 0.32
ATG4D-211ENST00000589753 RASSF8Q8NHQ8 419 aa17.02■□□□□ 0.32
ATG4D-211ENST00000589753 AFAP1L1Q8TED9 768 aa17.02■□□□□ 0.32
ATG4D-211ENST00000589753 GLG1Q92896 1179 aa17.02■□□□□ 0.32
ATG4D-211ENST00000589753 CALML4Q96GE6 196 aa17.02■□□□□ 0.32
ATG4D-211ENST00000589753 CDK5RAP3Q96JB5 506 aa17.02■□□□□ 0.32
ATG4D-211ENST00000589753 LXNQ9BS40 222 aa17.02■□□□□ 0.32
ATG4D-211ENST00000589753 SMARCAD1Q9H4L7 1026 aa17.02■□□□□ 0.32
ATG4D-211ENST00000589753 MAFBQ9Y5Q3 323 aaPredicted RBP17.02■□□□□ 0.32
ATG4D-211ENST00000589753 IGSF9BQ9UPX0 1349 aa17.01■□□□□ 0.31
ATG4D-211ENST00000589753 POTEB3A0JP26 581 aa17.01■□□□□ 0.31
ATG4D-211ENST00000589753 SGPL1O95470 568 aa17.01■□□□□ 0.31
ATG4D-211ENST00000589753 ZNF286BP0CG31 522 aa17.01■□□□□ 0.31
ATG4D-211ENST00000589753 MUTP22033 750 aa17.01■□□□□ 0.31
ATG4D-211ENST00000589753 ZRSR1Q15695 479 aaKnown RBP17.01■□□□□ 0.31
ATG4D-211ENST00000589753 KCNA10Q16322 511 aa17.01■□□□□ 0.31
ATG4D-211ENST00000589753 UGCGQ16739 394 aa17.01■□□□□ 0.31
ATG4D-211ENST00000589753 CCSAPQ6IQ19 270 aaPredicted RBP17.01■□□□□ 0.31
ATG4D-211ENST00000589753 PDXDC2PQ6P474 469 aa17.01■□□□□ 0.31
ATG4D-211ENST00000589753 POTEBQ6S5H4 581 aa17.01■□□□□ 0.31
ATG4D-211ENST00000589753 PLPPR4Q7Z2D5 763 aa17.01■□□□□ 0.31
ATG4D-211ENST00000589753 TRIM50Q86XT4 487 aa17.01■□□□□ 0.31
ATG4D-211ENST00000589753 U2AF1L4Q8WU68 220 aaKnown RBP17.01■□□□□ 0.31
ATG4D-211ENST00000589753 MRPS27Q92552 414 aaKnown RBP17.01■□□□□ 0.31
ATG4D-211ENST00000589753 C16orf70Q9BSU1 422 aa17.01■□□□□ 0.31
ATG4D-211ENST00000589753 TMEM106CQ9BVX2 250 aa17.01■□□□□ 0.31
ATG4D-211ENST00000589753 ZSWIM4Q9H7M6 989 aa17.01■□□□□ 0.31
ATG4D-211ENST00000589753 CCDC39Q9UFE4 941 aa17.01■□□□□ 0.31
ATG4D-211ENST00000589753 ZNF215Q9UL58 517 aaPredicted RBP17.01■□□□□ 0.31
ATG4D-211ENST00000589753 OGDHLQ9ULD0 1010 aa17.01■□□□□ 0.31
ATG4D-211ENST00000589753 GADD45BO75293 160 aaPredicted RBP17■□□□□ 0.31
ATG4D-211ENST00000589753 ASGR1P07306 291 aa17■□□□□ 0.31
ATG4D-211ENST00000589753 SLC26A2P50443 739 aa17■□□□□ 0.31
ATG4D-211ENST00000589753 UBE2HP62256 183 aa17■□□□□ 0.31
ATG4D-211ENST00000589753 PURAQ00577 322 aaKnown RBP17■□□□□ 0.31
ATG4D-211ENST00000589753 GRB10Q13322 594 aa17■□□□□ 0.31
ATG4D-211ENST00000589753 KARSQ15046 597 aaKnown RBP17■□□□□ 0.31
ATG4D-211ENST00000589753 HYIQ5T013 277 aa17■□□□□ 0.31
ATG4D-211ENST00000589753 C4orf19Q8IY42 314 aa17■□□□□ 0.31
ATG4D-211ENST00000589753 FSIP1Q8NA03 581 aa17■□□□□ 0.31
ATG4D-211ENST00000589753 TSEN34Q9BSV6 310 aaKnown RBP17■□□□□ 0.31
ATG4D-211ENST00000589753 CRISPLD2Q9H0B8 497 aa17■□□□□ 0.31
ATG4D-211ENST00000589753 NT5C3AQ9H0P0 336 aa17■□□□□ 0.31
ATG4D-211ENST00000589753 LMBRD1Q9NUN5 540 aa17■□□□□ 0.31
ATG4D-211ENST00000589753 ERAP1Q9NZ08 941 aa17■□□□□ 0.31
ATG4D-211ENST00000589753 WRAP73Q9P2S5 460 aaPredicted RBP17■□□□□ 0.31
ATG4D-211ENST00000589753 A0A1B0GVL5 298 aa16.99■□□□□ 0.31
ATG4D-211ENST00000589753 MOXD2PA6NHM9 499 aa16.99■□□□□ 0.31
ATG4D-211ENST00000589753 KBTBD13C9JR72 458 aa16.99■□□□□ 0.31
ATG4D-211ENST00000589753 H3BRB1 525 aa16.99■□□□□ 0.31
ATG4D-211ENST00000589753 ZNF862O60290 1169 aa16.99■□□□□ 0.31
ATG4D-211ENST00000589753 LYPLA2O95372 231 aa16.99■□□□□ 0.31
ATG4D-211ENST00000589753 F2P00734 622 aa16.99■□□□□ 0.31
ATG4D-211ENST00000589753 TFRCP02786 760 aaKnown RBP16.99■□□□□ 0.31
ATG4D-211ENST00000589753 PFKFB1P16118 471 aa16.99■□□□□ 0.31
ATG4D-211ENST00000589753 GJA8P48165 433 aa16.99■□□□□ 0.31
ATG4D-211ENST00000589753 PRKCEQ02156 737 aa16.99■□□□□ 0.31
ATG4D-211ENST00000589753 ECM1Q16610 540 aa16.99■□□□□ 0.31
ATG4D-211ENST00000589753 TMEM119Q4V9L6 283 aa16.99■□□□□ 0.31
ATG4D-211ENST00000589753 POTEGQ6S5H5 508 aa16.99■□□□□ 0.31
ATG4D-211ENST00000589753 CKAP2LQ8IYA6 745 aa16.99■□□□□ 0.31
ATG4D-211ENST00000589753 PNMA5Q96PV4 448 aa16.99■□□□□ 0.31
ATG4D-211ENST00000589753 PLIN2Q99541 437 aa16.99■□□□□ 0.31
ATG4D-211ENST00000589753 MTG1Q9BT17 334 aaPredicted RBP16.99■□□□□ 0.31
ATG4D-211ENST00000589753 KATNAL1Q9BW62 490 aa16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms