RNA–Protein interactions for RNA: ENST00000588109.5

LIG3-210, Transcript of DNA ligase 3, humanhuman

TSL 4

Gene LIG3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-210ENST00000588109 CUL5Q93034 780 aa6.07□□□□□ -1.44
LIG3-210ENST00000588109 HSH2DQ96JZ2 352 aa6.07□□□□□ -1.44
LIG3-210ENST00000588109 CAPNS2Q96L46 248 aa6.07□□□□□ -1.44
LIG3-210ENST00000588109 P2RX7Q99572 595 aaKnown RBP6.07□□□□□ -1.44
LIG3-210ENST00000588109 MKNK1Q9BUB5 465 aa6.07□□□□□ -1.44
LIG3-210ENST00000588109 TEX13BQ9BXU2 312 aa6.07□□□□□ -1.44
LIG3-210ENST00000588109 PSTPIP2Q9H939 334 aa6.07□□□□□ -1.44
LIG3-210ENST00000588109 ENAMQ9NRM1 1142 aa6.07□□□□□ -1.44
LIG3-210ENST00000588109 HOMER2Q9NSB8 354 aa6.07□□□□□ -1.44
LIG3-210ENST00000588109 PCDHA4Q9UN74 947 aa6.07□□□□□ -1.44
LIG3-210ENST00000588109 MTMR6Q9Y217 621 aa6.07□□□□□ -1.44
LIG3-210ENST00000588109 SLC45A1Q9Y2W3 748 aa6.07□□□□□ -1.44
LIG3-210ENST00000588109 MRPL11Q9Y3B7 192 aaKnown RBP6.07□□□□□ -1.44
LIG3-210ENST00000588109 ATP6V1DQ9Y5K8 247 aa6.07□□□□□ -1.44
LIG3-210ENST00000588109 PARP14Q460N5 1801 aa6.06□□□□□ -1.44
LIG3-210ENST00000588109 ZNF536O15090 1300 aa6.06□□□□□ -1.44
LIG3-210ENST00000588109 ESYT2A0FGR8 921 aa6.06□□□□□ -1.44
LIG3-210ENST00000588109 AOC2O75106 756 aa6.06□□□□□ -1.44
LIG3-210ENST00000588109 BRD1O95696 1058 aa6.06□□□□□ -1.44
LIG3-210ENST00000588109 THBS1P07996 1170 aa6.06□□□□□ -1.44
LIG3-210ENST00000588109 TAL1P17542 331 aaPredicted RBP6.06□□□□□ -1.44
LIG3-210ENST00000588109 STAT3P40763 770 aa6.06□□□□□ -1.44
LIG3-210ENST00000588109 GCLCP48506 637 aaPredicted RBP6.06□□□□□ -1.44
LIG3-210ENST00000588109 OAZ1P54368 228 aa6.06□□□□□ -1.44
LIG3-210ENST00000588109 CTBSQ01459 385 aa6.06□□□□□ -1.44
LIG3-210ENST00000588109 UBAP2LQ14157 1087 aaKnown RBP6.06□□□□□ -1.44
LIG3-210ENST00000588109 TMEM132BQ14DG7 1078 aa6.06□□□□□ -1.44
LIG3-210ENST00000588109 TAF1CQ15572 869 aaPredicted RBP6.06□□□□□ -1.44
LIG3-210ENST00000588109 FOXD4L6Q3SYB3 417 aaPredicted RBP6.06□□□□□ -1.44
LIG3-210ENST00000588109 WDR78Q5VTH9 848 aa6.06□□□□□ -1.44
LIG3-210ENST00000588109 GALNT17Q6IS24 598 aa6.06□□□□□ -1.44
LIG3-210ENST00000588109 FOXD4L3Q6VB84 417 aaPredicted RBP6.06□□□□□ -1.44
LIG3-210ENST00000588109 LBX2Q6XYB7 198 aa6.06□□□□□ -1.44
LIG3-210ENST00000588109 MCF2L2Q86YR7 1114 aa6.06□□□□□ -1.44
LIG3-210ENST00000588109 BLIDQ8IZY5 108 aa6.06□□□□□ -1.44
LIG3-210ENST00000588109 REXO1Q8N1G1 1221 aaKnown RBP6.06□□□□□ -1.44
LIG3-210ENST00000588109 FAM43AQ8N2R8 423 aa6.06□□□□□ -1.44
LIG3-210ENST00000588109 SVOPQ8N4V2 548 aa6.06□□□□□ -1.44
LIG3-210ENST00000588109 RGS22Q8NE09 1264 aa6.06□□□□□ -1.44
LIG3-210ENST00000588109 PHF20Q9BVI0 1012 aa6.06□□□□□ -1.44
LIG3-210ENST00000588109 ZMYND12Q9H0C1 365 aa6.06□□□□□ -1.44
LIG3-210ENST00000588109 GLT8D2Q9H1C3 349 aa6.06□□□□□ -1.44
LIG3-210ENST00000588109 ZSCAN16Q9H4T2 348 aaPredicted RBP6.06□□□□□ -1.44
LIG3-210ENST00000588109 RNF146Q9NTX7 359 aa6.06□□□□□ -1.44
LIG3-210ENST00000588109 KLK14Q9P0G3 267 aa6.06□□□□□ -1.44
LIG3-210ENST00000588109 COL11A1P12107 1806 aaPredicted RBP6.05□□□□□ -1.44
LIG3-210ENST00000588109 CCDC194A0A1B0GVG4 234 aa6.05□□□□□ -1.44
LIG3-210ENST00000588109 SPDYE3A6NKU9 549 aa6.05□□□□□ -1.44
LIG3-210ENST00000588109 BTBD18B2RXH4 712 aa6.05□□□□□ -1.44
LIG3-210ENST00000588109 GCOM1H8Y6P7 765 aaPredicted RBP6.05□□□□□ -1.44
LIG3-210ENST00000588109 IGF2BP3O00425 579 aaKnown RBP eCLIP6.05□□□□□ -1.44
LIG3-210ENST00000588109 PEX10O60683 326 aa6.05□□□□□ -1.44
LIG3-210ENST00000588109 CFBP00751 764 aa6.05□□□□□ -1.44
LIG3-210ENST00000588109 POLR2MP0CAP2 368 aa6.05□□□□□ -1.44
LIG3-210ENST00000588109 EPB42P16452 691 aa6.05□□□□□ -1.44
LIG3-210ENST00000588109 NCLP19338 710 aaKnown RBP6.05□□□□□ -1.44
LIG3-210ENST00000588109 CD33P20138 364 aa6.05□□□□□ -1.44
LIG3-210ENST00000588109 HOXA13P31271 388 aaPredicted RBP6.05□□□□□ -1.44
LIG3-210ENST00000588109 COPB2P35606 906 aa6.05□□□□□ -1.44
LIG3-210ENST00000588109 CCNA1P78396 465 aa6.05□□□□□ -1.44
LIG3-210ENST00000588109 HTRA3P83110 453 aa6.05□□□□□ -1.44
LIG3-210ENST00000588109 NAA30Q147X3 362 aaPredicted RBP6.05□□□□□ -1.44
LIG3-210ENST00000588109 OCLNQ16625 522 aa6.05□□□□□ -1.44
LIG3-210ENST00000588109 UBE2SQ16763 222 aa6.05□□□□□ -1.44
LIG3-210ENST00000588109 TKFCQ3LXA3 575 aa6.05□□□□□ -1.44
LIG3-210ENST00000588109 JAKMIP3Q5VZ66 844 aa6.05□□□□□ -1.44
LIG3-210ENST00000588109 C16orf46Q6P387 395 aa6.05□□□□□ -1.44
LIG3-210ENST00000588109 NSMFQ6X4W1 530 aa6.05□□□□□ -1.44
LIG3-210ENST00000588109 PIK3AP1Q6ZUJ8 805 aa6.05□□□□□ -1.44
LIG3-210ENST00000588109 BRAPQ7Z569 592 aa6.05□□□□□ -1.44
LIG3-210ENST00000588109 BTLAQ7Z6A9 289 aa6.05□□□□□ -1.44
LIG3-210ENST00000588109 NCAPG2Q86XI2 1143 aa6.05□□□□□ -1.44
LIG3-210ENST00000588109 NOSTRINQ8IVI9 506 aa6.05□□□□□ -1.44
LIG3-210ENST00000588109 ANKRD13CQ8N6S4 541 aa6.05□□□□□ -1.44
LIG3-210ENST00000588109 DAGLBQ8NCG7 672 aa6.05□□□□□ -1.44
LIG3-210ENST00000588109 REPS2Q8NFH8 660 aa6.05□□□□□ -1.44
LIG3-210ENST00000588109 GPRC5AQ8NFJ5 357 aa6.05□□□□□ -1.44
LIG3-210ENST00000588109 RASGRP4Q8TDF6 673 aa6.05□□□□□ -1.44
LIG3-210ENST00000588109 COL26A1Q96A83 441 aa6.05□□□□□ -1.44
LIG3-210ENST00000588109 SHISA4Q96DD7 197 aa6.05□□□□□ -1.44
LIG3-210ENST00000588109 IFT43Q96FT9 208 aa6.05□□□□□ -1.44
LIG3-210ENST00000588109 PTPN18Q99952 460 aa6.05□□□□□ -1.44
LIG3-210ENST00000588109 SPATC1LQ9H0A9 340 aa6.05□□□□□ -1.44
LIG3-210ENST00000588109 FOXP1Q9H334 677 aaPredicted RBP6.05□□□□□ -1.44
LIG3-210ENST00000588109 ACAD9Q9H845 621 aa6.05□□□□□ -1.44
LIG3-210ENST00000588109 ZFYVE28Q9HCC9 887 aa6.05□□□□□ -1.44
LIG3-210ENST00000588109 ZCCHC17Q9NP64 241 aaKnown RBP6.05□□□□□ -1.44
LIG3-210ENST00000588109 BRD7Q9NPI1 651 aa6.05□□□□□ -1.44
LIG3-210ENST00000588109 RIC8AQ9NPQ8 531 aa6.05□□□□□ -1.44
LIG3-210ENST00000588109 NDFIP2Q9NV92 336 aa6.05□□□□□ -1.44
LIG3-210ENST00000588109 BTBD7Q9P203 1132 aa6.05□□□□□ -1.44
LIG3-210ENST00000588109 RBPJLQ9UBG7 517 aa6.05□□□□□ -1.44
LIG3-210ENST00000588109 BIN2Q9UBW5 565 aaPredicted RBP6.05□□□□□ -1.44
LIG3-210ENST00000588109 STK17AQ9UEE5 414 aa6.05□□□□□ -1.44
LIG3-210ENST00000588109 ZNF214Q9UL59 606 aaPredicted RBP6.05□□□□□ -1.44
LIG3-210ENST00000588109 NOL7Q9UMY1 257 aaKnown RBP6.05□□□□□ -1.44
LIG3-210ENST00000588109 ADAMTS5Q9UNA0 930 aa6.05□□□□□ -1.44
LIG3-210ENST00000588109 RABGAP1Q9Y3P9 1069 aa6.05□□□□□ -1.44
LIG3-210ENST00000588109 RLFQ13129 1914 aa6.05□□□□□ -1.44
LIG3-210ENST00000588109 A0A0G2JMZ2 1700 aa6.05□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms