RNA–Protein interactions for RNA: ENST00000581265.1

RFFL-209, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 4

Gene RFFL, Length 596 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-209ENST00000581265 JADE2Q9NQC1 790 aa12.16□□□□□ -0.46
RFFL-209ENST00000581265 PCDHA6Q9UN73 950 aa12.16□□□□□ -0.46
RFFL-209ENST00000581265 PCDHA8Q9Y5H6 950 aa12.16□□□□□ -0.46
RFFL-209ENST00000581265 MYO7AQ13402 2215 aa12.16□□□□□ -0.46
RFFL-209ENST00000581265 COL4A4P53420 1690 aaPredicted RBP12.16□□□□□ -0.46
RFFL-209ENST00000581265 hCG_1642624A0A1W2PR95 340 aa12.15□□□□□ -0.46
RFFL-209ENST00000581265 RRN3P2A6NIE6 340 aa12.15□□□□□ -0.46
RFFL-209ENST00000581265 ENPP3O14638 875 aa12.15□□□□□ -0.46
RFFL-209ENST00000581265 RPLP2P05387 115 aaKnown RBP12.15□□□□□ -0.46
RFFL-209ENST00000581265 RB1P06400 928 aa12.15□□□□□ -0.46
RFFL-209ENST00000581265 MGAT3Q09327 533 aa12.15□□□□□ -0.46
RFFL-209ENST00000581265 LPIN1Q14693 890 aa12.15□□□□□ -0.46
RFFL-209ENST00000581265 GRIK4Q16099 956 aa12.15□□□□□ -0.46
RFFL-209ENST00000581265 TIGD5Q53EQ6 642 aa12.15□□□□□ -0.46
RFFL-209ENST00000581265 RUFY4Q6ZNE9 571 aa12.15□□□□□ -0.46
RFFL-209ENST00000581265 CCDC82Q8N4S0 544 aa12.15□□□□□ -0.46
RFFL-209ENST00000581265 FIBCD1Q8N539 461 aa12.15□□□□□ -0.46
RFFL-209ENST00000581265 BANK1Q8NDB2 785 aa12.15□□□□□ -0.46
RFFL-209ENST00000581265 NEK9Q8TD19 979 aa12.15□□□□□ -0.46
RFFL-209ENST00000581265 GLG1Q92896 1179 aa12.15□□□□□ -0.46
RFFL-209ENST00000581265 PRRX2Q99811 253 aa12.15□□□□□ -0.46
RFFL-209ENST00000581265 ESYT1Q9BSJ8 1104 aa12.15□□□□□ -0.46
RFFL-209ENST00000581265 TUBE1Q9UJT0 475 aa12.15□□□□□ -0.46
RFFL-209ENST00000581265 DOCK5Q9H7D0 1870 aa12.14□□□□□ -0.47
RFFL-209ENST00000581265 COL4A6Q14031 1691 aa12.14□□□□□ -0.47
RFFL-209ENST00000581265 C5orf67F2Z3F1 127 aa12.14□□□□□ -0.47
RFFL-209ENST00000581265 H3BQ06 376 aaPredicted RBP12.14□□□□□ -0.47
RFFL-209ENST00000581265 GFRA3O60609 400 aa12.14□□□□□ -0.47
RFFL-209ENST00000581265 LINC00271P0C7V0 271 aa12.14□□□□□ -0.47
RFFL-209ENST00000581265 GHRP10912 638 aa12.14□□□□□ -0.47
RFFL-209ENST00000581265 INSRRP14616 1297 aa12.14□□□□□ -0.47
RFFL-209ENST00000581265 MARK3P27448 753 aa12.14□□□□□ -0.47
RFFL-209ENST00000581265 BMPR1AP36894 532 aa12.14□□□□□ -0.47
RFFL-209ENST00000581265 IRX6P78412 446 aaPredicted RBP12.14□□□□□ -0.47
RFFL-209ENST00000581265 UBE2SQ16763 222 aa12.14□□□□□ -0.47
RFFL-209ENST00000581265 FBXO47Q5MNV8 452 aa12.14□□□□□ -0.47
RFFL-209ENST00000581265 DNAJB3Q8WWF6 145 aa12.14□□□□□ -0.47
RFFL-209ENST00000581265 PABPC5Q96DU9 382 aaKnown RBP12.14□□□□□ -0.47
RFFL-209ENST00000581265 PCYT2Q99447 389 aa12.14□□□□□ -0.47
RFFL-209ENST00000581265 KCNH7Q9NS40 1196 aa12.14□□□□□ -0.47
RFFL-209ENST00000581265 PRKAG3Q9UGI9 489 aa12.14□□□□□ -0.47
RFFL-209ENST00000581265 SQORQ9Y6N5 450 aa12.14□□□□□ -0.47
RFFL-209ENST00000581265 NCK2O43639 380 aa12.13□□□□□ -0.47
RFFL-209ENST00000581265 FOSP01100 380 aaPredicted RBP12.13□□□□□ -0.47
RFFL-209ENST00000581265 TCEAL5Q5H9L2 206 aa12.13□□□□□ -0.47
RFFL-209ENST00000581265 SYNE3Q6ZMZ3 975 aa12.13□□□□□ -0.47
RFFL-209ENST00000581265 PLPPR4Q7Z2D5 763 aa12.13□□□□□ -0.47
RFFL-209ENST00000581265 HEATR3Q7Z4Q2 680 aa12.13□□□□□ -0.47
RFFL-209ENST00000581265 RAB11FIP4Q86YS3 637 aa12.13□□□□□ -0.47
RFFL-209ENST00000581265 SUGP1Q8IWZ8 645 aaKnown RBP12.13□□□□□ -0.47
RFFL-209ENST00000581265 CRIPAKQ8N1N5 446 aa12.13□□□□□ -0.47
RFFL-209ENST00000581265 CYP2W1Q8TAV3 490 aa12.13□□□□□ -0.47
RFFL-209ENST00000581265 TNPO1Q92973 898 aaKnown RBP12.13□□□□□ -0.47
RFFL-209ENST00000581265 CLP1Q92989 425 aaKnown RBP12.13□□□□□ -0.47
RFFL-209ENST00000581265 ZNF689Q96CS4 500 aaPredicted RBP12.13□□□□□ -0.47
RFFL-209ENST00000581265 MXRA8Q9BRK3 442 aa12.13□□□□□ -0.47
RFFL-209ENST00000581265 LRRC2Q9BYS8 371 aa12.13□□□□□ -0.47
RFFL-209ENST00000581265 NSUN3Q9H649 340 aaKnown RBP12.13□□□□□ -0.47
RFFL-209ENST00000581265 RC3H2Q9HBD1 1191 aaKnown RBP12.13□□□□□ -0.47
RFFL-209ENST00000581265 JPH1Q9HDC5 661 aaPredicted RBP12.13□□□□□ -0.47
RFFL-209ENST00000581265 RIC8AQ9NPQ8 531 aa12.13□□□□□ -0.47
RFFL-209ENST00000581265 PKD2L1Q9P0L9 805 aa12.13□□□□□ -0.47
RFFL-209ENST00000581265 SLC9A2Q9UBY0 812 aa12.13□□□□□ -0.47
RFFL-209ENST00000581265 RWDD3Q9Y3V2 267 aa12.13□□□□□ -0.47
RFFL-209ENST00000581265 CDY2AQ9Y6F7 541 aa12.13□□□□□ -0.47
RFFL-209ENST00000581265 TTC3P53804 2025 aa12.13□□□□□ -0.47
RFFL-209ENST00000581265 NFASCO94856 1347 aa12.12□□□□□ -0.47
RFFL-209ENST00000581265 MEIS1O00470 390 aa12.12□□□□□ -0.47
RFFL-209ENST00000581265 DGKIO75912 1065 aa12.12□□□□□ -0.47
RFFL-209ENST00000581265 MRPS6P82932 125 aaKnown RBP12.12□□□□□ -0.47
RFFL-209ENST00000581265 EXOSC10Q01780 885 aaKnown RBP12.12□□□□□ -0.47
RFFL-209ENST00000581265 FUT2Q10981 343 aa12.12□□□□□ -0.47
RFFL-209ENST00000581265 TSGA10IPQ3SY00 556 aa12.12□□□□□ -0.47
RFFL-209ENST00000581265 CEP55Q53EZ4 464 aa12.12□□□□□ -0.47
RFFL-209ENST00000581265 RNF20Q5VTR2 975 aa12.12□□□□□ -0.47
RFFL-209ENST00000581265 IER5Q5VY09 327 aa12.12□□□□□ -0.47
RFFL-209ENST00000581265 WWC2Q6AWC2 1192 aa12.12□□□□□ -0.47
RFFL-209ENST00000581265 TYW1BQ6NUM6 668 aa12.12□□□□□ -0.47
RFFL-209ENST00000581265 APOA5Q6Q788 366 aa12.12□□□□□ -0.47
RFFL-209ENST00000581265 TSHZ1Q6ZSZ6 1077 aa12.12□□□□□ -0.47
RFFL-209ENST00000581265 FAM43BQ6ZT52 329 aaPredicted RBP12.12□□□□□ -0.47
RFFL-209ENST00000581265 RTN4RL1Q86UN2 441 aaPredicted RBP12.12□□□□□ -0.47
RFFL-209ENST00000581265 MICU3Q86XE3 530 aa12.12□□□□□ -0.47
RFFL-209ENST00000581265 ADHFE1Q8IWW8 467 aa12.12□□□□□ -0.47
RFFL-209ENST00000581265 PRSS33Q8NF86 280 aa12.12□□□□□ -0.47
RFFL-209ENST00000581265 NEK1Q96PY6 1258 aa12.12□□□□□ -0.47
RFFL-209ENST00000581265 C11orf84Q9BUA3 381 aaPredicted RBP12.12□□□□□ -0.47
RFFL-209ENST00000581265 LMAN2LQ9H0V9 348 aa12.12□□□□□ -0.47
RFFL-209ENST00000581265 AZI2Q9H6S1 392 aa12.12□□□□□ -0.47
RFFL-209ENST00000581265 AGO3Q9H9G7 860 aaKnown RBP12.12□□□□□ -0.47
RFFL-209ENST00000581265 ANO2Q9NQ90 1003 aa12.12□□□□□ -0.47
RFFL-209ENST00000581265 RBM28Q9NW13 759 aaKnown RBP12.12□□□□□ -0.47
RFFL-209ENST00000581265 PCDHA2Q9Y5H9 948 aa12.12□□□□□ -0.47
RFFL-209ENST00000581265 V9GY48 417 aaPredicted RBP12.12□□□□□ -0.47
RFFL-209ENST00000581265 ADGRA3Q8IWK6 1321 aa12.11□□□□□ -0.47
RFFL-209ENST00000581265 hCG_1984214I3L0E3 225 aa12.11□□□□□ -0.47
RFFL-209ENST00000581265 GRM6O15303 877 aa12.11□□□□□ -0.47
RFFL-209ENST00000581265 ATG7O95352 703 aa12.11□□□□□ -0.47
RFFL-209ENST00000581265 ARP10275 920 aa12.11□□□□□ -0.47
RFFL-209ENST00000581265 CTNNB1P35222 781 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 70.5 ms