RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 NOSTRINQ8IVI9 506 aa9.2□□□□□ -0.94
SS18-214ENST00000580003 DHX37Q8IY37 1157 aaKnown RBP9.2□□□□□ -0.94
SS18-214ENST00000580003 CHST14Q8NCH0 376 aa9.2□□□□□ -0.94
SS18-214ENST00000580003 SPATA25Q9BR10 227 aa9.2□□□□□ -0.94
SS18-214ENST00000580003 BOCQ9BWV1 1114 aa9.2□□□□□ -0.94
SS18-214ENST00000580003 ZNF839A8K0R7 811 aa9.19□□□□□ -0.94
SS18-214ENST00000580003 FBXO21O94952 628 aa9.19□□□□□ -0.94
SS18-214ENST00000580003 C4BPAP04003 597 aaKnown RBP9.19□□□□□ -0.94
SS18-214ENST00000580003 NEK4P51957 841 aa9.19□□□□□ -0.94
SS18-214ENST00000580003 IRF9Q00978 393 aa9.19□□□□□ -0.94
SS18-214ENST00000580003 SDE2Q6IQ49 451 aa9.19□□□□□ -0.94
SS18-214ENST00000580003 CNNM4Q6P4Q7 775 aa9.19□□□□□ -0.94
SS18-214ENST00000580003 PKN3Q6P5Z2 889 aa9.19□□□□□ -0.94
SS18-214ENST00000580003 IGDCC4Q8TDY8 1250 aa9.19□□□□□ -0.94
SS18-214ENST00000580003 KCNH7Q9NS40 1196 aa9.19□□□□□ -0.94
SS18-214ENST00000580003 ARHGAP20Q9P2F6 1191 aa9.19□□□□□ -0.94
SS18-214ENST00000580003 DDX3XO00571 662 aaKnown RBP eCLIP9.18□□□□□ -0.94
SS18-214ENST00000580003 KRT37O76014 449 aa9.18□□□□□ -0.94
SS18-214ENST00000580003 GLRBP48167 497 aa9.18□□□□□ -0.94
SS18-214ENST00000580003 HERVK_113P62684 666 aa9.18□□□□□ -0.94
SS18-214ENST00000580003 PLEKHG4Q58EX7 1191 aa9.18□□□□□ -0.94
SS18-214ENST00000580003 PRR31Q5SQ13 230 aa9.18□□□□□ -0.94
SS18-214ENST00000580003 LRRTM3Q86VH5 581 aa9.18□□□□□ -0.94
SS18-214ENST00000580003 MFSD3Q96ES6 412 aa9.18□□□□□ -0.94
SS18-214ENST00000580003 KCNC2Q96PR1 638 aa9.18□□□□□ -0.94
SS18-214ENST00000580003 L2HGDHQ9H9P8 463 aa9.18□□□□□ -0.94
SS18-214ENST00000580003 SLC39A2Q9NP94 309 aa9.18□□□□□ -0.94
SS18-214ENST00000580003 PARD6AQ9NPB6 346 aa9.18□□□□□ -0.94
SS18-214ENST00000580003 IL13P35225 146 aa9.17□□□□□ -0.94
SS18-214ENST00000580003 MECP2P51608 486 aaKnown RBP9.17□□□□□ -0.94
SS18-214ENST00000580003 FBLN7Q53RD9 439 aa9.17□□□□□ -0.94
SS18-214ENST00000580003 DALRD3Q5D0E6 543 aaKnown RBP9.17□□□□□ -0.94
SS18-214ENST00000580003 PHF19Q5T6S3 580 aa9.17□□□□□ -0.94
SS18-214ENST00000580003 OTOP1Q7RTM1 612 aa9.17□□□□□ -0.94
SS18-214ENST00000580003 KRTAP1-3Q8IUG1 177 aa9.17□□□□□ -0.94
SS18-214ENST00000580003 ADAMTS17Q8TE56 1095 aa9.17□□□□□ -0.94
SS18-214ENST00000580003 SLKQ9H2G2 1235 aaPredicted RBP9.17□□□□□ -0.94
SS18-214ENST00000580003 ZFP69BQ9UJL9 534 aa9.17□□□□□ -0.94
SS18-214ENST00000580003 B3GALT1Q9Y5Z6 326 aa9.17□□□□□ -0.94
SS18-214ENST00000580003 PTPDC1A2A3K4 754 aa9.16□□□□□ -0.94
SS18-214ENST00000580003 CBX4O00257 560 aa9.16□□□□□ -0.94
SS18-214ENST00000580003 KPNA6O60684 536 aa9.16□□□□□ -0.94
SS18-214ENST00000580003 CLSTN1O94985 981 aa9.16□□□□□ -0.94
SS18-214ENST00000580003 ZNF28P17035 718 aa9.16□□□□□ -0.94
SS18-214ENST00000580003 HSD3B2P26439 372 aa9.16□□□□□ -0.94
SS18-214ENST00000580003 TMEM132BQ14DG7 1078 aa9.16□□□□□ -0.94
SS18-214ENST00000580003 SEC23AQ15436 765 aa9.16□□□□□ -0.94
SS18-214ENST00000580003 TRMT10BQ6PF06 316 aaKnown RBP9.16□□□□□ -0.94
SS18-214ENST00000580003 DLG3Q92796 817 aa9.16□□□□□ -0.94
SS18-214ENST00000580003 USP40Q9NVE5 1235 aa9.16□□□□□ -0.94
SS18-214ENST00000580003 TRAF5O00463 557 aa9.15□□□□□ -0.94
SS18-214ENST00000580003 FOXP2O15409 715 aa9.15□□□□□ -0.94
SS18-214ENST00000580003 INHBBP09529 407 aa9.15□□□□□ -0.94
SS18-214ENST00000580003 PTGS1P23219 599 aa9.15□□□□□ -0.94
SS18-214ENST00000580003 MLLT6P55198 1093 aaPredicted RBP9.15□□□□□ -0.94
SS18-214ENST00000580003 GJA9P57773 515 aa9.15□□□□□ -0.94
SS18-214ENST00000580003 RTP5Q14D33 572 aa9.15□□□□□ -0.94
SS18-214ENST00000580003 FAM26FQ5R3K3 315 aa9.15□□□□□ -0.94
SS18-214ENST00000580003 NT5DC1Q5TFE4 455 aa9.15□□□□□ -0.94
SS18-214ENST00000580003 MCTP2Q6DN12 878 aa9.15□□□□□ -0.94
SS18-214ENST00000580003 FSTL4Q6MZW2 842 aa9.15□□□□□ -0.94
SS18-214ENST00000580003 ZNF761Q86XN6 746 aaPredicted RBP9.15□□□□□ -0.94
SS18-214ENST00000580003 AHI1Q8N157 1196 aa9.15□□□□□ -0.94
SS18-214ENST00000580003 PPM1KQ8N3J5 372 aa9.15□□□□□ -0.94
SS18-214ENST00000580003 SYT8Q8NBV8 401 aa9.15□□□□□ -0.94
SS18-214ENST00000580003 DDX1Q92499 740 aaKnown RBP9.15□□□□□ -0.94
SS18-214ENST00000580003 B4GALT6Q9UBX8 382 aa9.15□□□□□ -0.94
SS18-214ENST00000580003 FTSJ1Q9UET6 329 aa9.15□□□□□ -0.94
SS18-214ENST00000580003 ZKSCAN5Q9Y2L8 839 aa9.15□□□□□ -0.94
SS18-214ENST00000580003 H7C1D1 291 aa9.14□□□□□ -0.95
SS18-214ENST00000580003 CYP1A1P04798 512 aaPredicted RBP9.14□□□□□ -0.95
SS18-214ENST00000580003 CHGBP05060 677 aa9.14□□□□□ -0.95
SS18-214ENST00000580003 MMEP08473 750 aa9.14□□□□□ -0.95
SS18-214ENST00000580003 ZBTB48P10074 688 aaPredicted RBP9.14□□□□□ -0.95
SS18-214ENST00000580003 AOAHP28039 575 aa9.14□□□□□ -0.95
SS18-214ENST00000580003 SMAD2Q15796 467 aaKnown RBP9.14□□□□□ -0.95
SS18-214ENST00000580003 STPG3Q8N7X2 389 aa9.14□□□□□ -0.95
SS18-214ENST00000580003 FEZF2Q8TBJ5 459 aa9.14□□□□□ -0.95
SS18-214ENST00000580003 BTBD11A6QL63 1104 aa9.13□□□□□ -0.95
SS18-214ENST00000580003 POU3F2P20265 443 aaPredicted RBP9.13□□□□□ -0.95
SS18-214ENST00000580003 KIF11P52732 1056 aa9.13□□□□□ -0.95
SS18-214ENST00000580003 GYS2P54840 703 aa9.13□□□□□ -0.95
SS18-214ENST00000580003 ZNF174Q15697 407 aa9.13□□□□□ -0.95
SS18-214ENST00000580003 RGL3Q3MIN7 710 aa9.13□□□□□ -0.95
SS18-214ENST00000580003 TM4SF20Q53R12 229 aa9.13□□□□□ -0.95
SS18-214ENST00000580003 CC2D1AQ6P1N0 951 aaPredicted RBP9.13□□□□□ -0.95
SS18-214ENST00000580003 DPP8Q6V1X1 898 aaPredicted RBP9.13□□□□□ -0.95
SS18-214ENST00000580003 FAM124AQ86V42 546 aa9.13□□□□□ -0.95
SS18-214ENST00000580003 ZDHHC14Q8IZN3 488 aa9.13□□□□□ -0.95
SS18-214ENST00000580003 TXNDC5Q8NBS9 432 aaKnown RBP9.13□□□□□ -0.95
SS18-214ENST00000580003 HIPK4Q8NE63 616 aa9.13□□□□□ -0.95
SS18-214ENST00000580003 WDR48Q8TAF3 677 aa9.13□□□□□ -0.95
SS18-214ENST00000580003 ZCCHC14Q8WYQ9 949 aaKnown RBP9.13□□□□□ -0.95
SS18-214ENST00000580003 GBP4Q96PP9 640 aa9.13□□□□□ -0.95
SS18-214ENST00000580003 TACO1Q9BSH4 297 aaKnown RBP9.13□□□□□ -0.95
SS18-214ENST00000580003 TMEM168Q9H0V1 697 aa9.13□□□□□ -0.95
SS18-214ENST00000580003 PCIF1Q9H4Z3 704 aa9.13□□□□□ -0.95
SS18-214ENST00000580003 INCENPQ9NQS7 918 aa9.13□□□□□ -0.95
SS18-214ENST00000580003 GAS7O60861 476 aa9.12□□□□□ -0.95
SS18-214ENST00000580003 SDHAP31040 664 aa9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 71.5 ms