RNA–Protein interactions for RNA: ENST00000579061.5

SS18-212, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-212ENST00000579061 EDIL3O43854 480 aa16.84■□□□□ 0.29
SS18-212ENST00000579061 EFCAB14O75071 495 aa16.84■□□□□ 0.29
SS18-212ENST00000579061 CCNE2O96020 404 aa16.84■□□□□ 0.29
SS18-212ENST00000579061 RPLP2P05387 115 aaKnown RBP16.84■□□□□ 0.29
SS18-212ENST00000579061 RSPH10BP0C881 870 aa16.84■□□□□ 0.29
SS18-212ENST00000579061 GRIK4Q16099 956 aa16.84■□□□□ 0.29
SS18-212ENST00000579061 PRR16Q569H4 304 aa16.84■□□□□ 0.29
SS18-212ENST00000579061 ZNF746Q6NUN9 644 aaPredicted RBP16.84■□□□□ 0.29
SS18-212ENST00000579061 TAF2Q6P1X5 1199 aa16.84■□□□□ 0.29
SS18-212ENST00000579061 MOXD1Q6UVY6 613 aa16.84■□□□□ 0.29
SS18-212ENST00000579061 TBCKQ8TEA7 893 aa16.84■□□□□ 0.29
SS18-212ENST00000579061 LENG9Q96B70 501 aa16.84■□□□□ 0.29
SS18-212ENST00000579061 TIFAQ96CG3 184 aa16.84■□□□□ 0.29
SS18-212ENST00000579061 GUCD1Q96NT3 240 aa16.84■□□□□ 0.29
SS18-212ENST00000579061 SLC9A7Q96T83 725 aa16.84■□□□□ 0.29
SS18-212ENST00000579061 PHF20Q9BVI0 1012 aa16.84■□□□□ 0.29
SS18-212ENST00000579061 TTYH1Q9H313 450 aaPredicted RBP16.84■□□□□ 0.29
SS18-212ENST00000579061 ORC3Q9UBD5 711 aaPredicted RBP16.84■□□□□ 0.29
SS18-212ENST00000579061 CYP3A7-CYP3A51PA0A087WV96 503 aa16.83■□□□□ 0.28
SS18-212ENST00000579061 ATP2A2P16615 1042 aaKnown RBP16.83■□□□□ 0.28
SS18-212ENST00000579061 CYP3A7P24462 503 aa16.83■□□□□ 0.28
SS18-212ENST00000579061 MARK3P27448 753 aa16.83■□□□□ 0.28
SS18-212ENST00000579061 KRT76Q01546 638 aa16.83■□□□□ 0.28
SS18-212ENST00000579061 MBTPS1Q14703 1052 aa16.83■□□□□ 0.28
SS18-212ENST00000579061 PLCB4Q15147 1175 aa16.83■□□□□ 0.28
SS18-212ENST00000579061 FAM26DQ5JW98 314 aa16.83■□□□□ 0.28
SS18-212ENST00000579061 FAM160B1Q5W0V3 765 aa16.83■□□□□ 0.28
SS18-212ENST00000579061 MIS18BP1Q6P0N0 1132 aa16.83■□□□□ 0.28
SS18-212ENST00000579061 KRT25Q7Z3Z0 450 aa16.83■□□□□ 0.28
SS18-212ENST00000579061 SMAP1Q8IYB5 467 aaPredicted RBP16.83■□□□□ 0.28
SS18-212ENST00000579061 TCEAL9Q9UHQ7 104 aa16.83■□□□□ 0.28
SS18-212ENST00000579061 PCDHA11Q9Y5I1 949 aa16.83■□□□□ 0.28
SS18-212ENST00000579061 MICAL3Q7RTP6 2002 aa16.82■□□□□ 0.28
SS18-212ENST00000579061 PTPRSQ13332 1948 aa16.82■□□□□ 0.28
SS18-212ENST00000579061 ABHD14A-ACY1A0A1B0GW23 586 aa16.82■□□□□ 0.28
SS18-212ENST00000579061 DDX39AO00148 427 aaKnown RBP16.82■□□□□ 0.28
SS18-212ENST00000579061 LARGE1O95461 756 aa16.82■□□□□ 0.28
SS18-212ENST00000579061 INSRRP14616 1297 aa16.82■□□□□ 0.28
SS18-212ENST00000579061 PBX2P40425 430 aa16.82■□□□□ 0.28
SS18-212ENST00000579061 NONOQ15233 471 aaKnown RBP eCLIP16.82■□□□□ 0.28
SS18-212ENST00000579061 Q4G0T1 1027 aa16.82■□□□□ 0.28
SS18-212ENST00000579061 NECAB1Q8N987 351 aa16.82■□□□□ 0.28
SS18-212ENST00000579061 FAM161BQ96MY7 647 aa16.82■□□□□ 0.28
SS18-212ENST00000579061 MBOAT7Q96N66 472 aa16.82■□□□□ 0.28
SS18-212ENST00000579061 RIT2Q99578 217 aa16.82■□□□□ 0.28
SS18-212ENST00000579061 ZNF576Q9H609 170 aa16.82■□□□□ 0.28
SS18-212ENST00000579061 TUBE1Q9UJT0 475 aa16.82■□□□□ 0.28
SS18-212ENST00000579061 KCNJ14Q9UNX9 436 aa16.82■□□□□ 0.28
SS18-212ENST00000579061 POTEB3A0JP26 581 aa16.81■□□□□ 0.28
SS18-212ENST00000579061 BACH1O14867 736 aa16.81■□□□□ 0.28
SS18-212ENST00000579061 MSH4O15457 936 aa16.81■□□□□ 0.28
SS18-212ENST00000579061 HBP1O60381 514 aa16.81■□□□□ 0.28
SS18-212ENST00000579061 FDPSP14324 419 aaKnown RBP16.81■□□□□ 0.28
SS18-212ENST00000579061 KCNJ6P48051 423 aa16.81■□□□□ 0.28
SS18-212ENST00000579061 IKBKEQ14164 716 aa16.81■□□□□ 0.28
SS18-212ENST00000579061 MARCH8Q5T0T0 291 aa16.81■□□□□ 0.28
SS18-212ENST00000579061 POTEBQ6S5H4 581 aa16.81■□□□□ 0.28
SS18-212ENST00000579061 RSPH3Q86UC2 560 aa16.81■□□□□ 0.28
SS18-212ENST00000579061 CCDC60Q8IWA6 550 aaPredicted RBP16.81■□□□□ 0.28
SS18-212ENST00000579061 NSUN7Q8NE18 718 aaKnown RBP16.81■□□□□ 0.28
SS18-212ENST00000579061 ZNF302Q9NR11 478 aa16.81■□□□□ 0.28
SS18-212ENST00000579061 LIMCH1Q9UPQ0 1083 aa16.81■□□□□ 0.28
SS18-212ENST00000579061 TRPC6Q9Y210 931 aa16.81■□□□□ 0.28
SS18-212ENST00000579061 PCDHA10Q9Y5I2 948 aa16.81■□□□□ 0.28
SS18-212ENST00000579061 COL6A3P12111 3177 aa16.81■□□□□ 0.28
SS18-212ENST00000579061 CCDC194A0A1B0GVG4 234 aa16.8■□□□□ 0.28
SS18-212ENST00000579061 PSAPP07602 524 aa16.8■□□□□ 0.28
SS18-212ENST00000579061 RBM25P49756 843 aaKnown RBP16.8■□□□□ 0.28
SS18-212ENST00000579061 WDR5P61964 334 aaKnown RBP16.8■□□□□ 0.28
SS18-212ENST00000579061 PLEKHG4Q58EX7 1191 aa16.8■□□□□ 0.28
SS18-212ENST00000579061 IL27Q8NEV9 243 aa16.8■□□□□ 0.28
SS18-212ENST00000579061 ATP8B4Q8TF62 1192 aa16.8■□□□□ 0.28
SS18-212ENST00000579061 SLC5A5Q92911 643 aa16.8■□□□□ 0.28
SS18-212ENST00000579061 CDX2Q99626 313 aaPredicted RBP16.8■□□□□ 0.28
SS18-212ENST00000579061 KIF2CQ99661 725 aa16.8■□□□□ 0.28
SS18-212ENST00000579061 MAFBQ9Y5Q3 323 aaPredicted RBP16.8■□□□□ 0.28
SS18-212ENST00000579061 EVPLQ92817 2033 aa16.8■□□□□ 0.28
SS18-212ENST00000579061 SIP14410 1827 aa16.8■□□□□ 0.28
SS18-212ENST00000579061 COL1A2P08123 1366 aa16.79■□□□□ 0.28
SS18-212ENST00000579061 CHD9Q3L8U1 2897 aa16.79■□□□□ 0.28
SS18-212ENST00000579061 WDR64B1ANS9 1081 aa16.79■□□□□ 0.28
SS18-212ENST00000579061 KIF28PB7ZC32 967 aa16.79■□□□□ 0.28
SS18-212ENST00000579061 GAS7O60861 476 aa16.79■□□□□ 0.28
SS18-212ENST00000579061 INF2Q27J81 1249 aa16.79■□□□□ 0.28
SS18-212ENST00000579061 SWSAP1Q6NVH7 229 aa16.79■□□□□ 0.28
SS18-212ENST00000579061 PDXDC2PQ6P474 469 aa16.79■□□□□ 0.28
SS18-212ENST00000579061 RUFY4Q6ZNE9 571 aa16.79■□□□□ 0.28
SS18-212ENST00000579061 HERC6Q8IVU3 1022 aa16.79■□□□□ 0.28
SS18-212ENST00000579061 DBF4BQ8NFT6 615 aa16.79■□□□□ 0.28
SS18-212ENST00000579061 RDM1Q8NG50 284 aa16.79■□□□□ 0.28
SS18-212ENST00000579061 ZSCAN31Q96LW9 406 aaPredicted RBP16.79■□□□□ 0.28
SS18-212ENST00000579061 TEKT3Q9BXF9 490 aa16.79■□□□□ 0.28
SS18-212ENST00000579061 SLC28A3Q9HAS3 691 aa16.79■□□□□ 0.28
SS18-212ENST00000579061 BRMS1Q9HCU9 246 aa16.79■□□□□ 0.28
SS18-212ENST00000579061 YBX2Q9Y2T7 364 aaKnown RBP16.79■□□□□ 0.28
SS18-212ENST00000579061 PCDHA2Q9Y5H9 948 aa16.79■□□□□ 0.28
SS18-212ENST00000579061 PSMD10O75832 226 aa16.78■□□□□ 0.28
SS18-212ENST00000579061 TDP2O95551 362 aa16.78■□□□□ 0.28
SS18-212ENST00000579061 CHRNA1P02708 482 aa16.78■□□□□ 0.28
SS18-212ENST00000579061 CTSHP09668 335 aa16.78■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms