RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 LRIT3Q3SXY7 679 aa22.05■■□□□ 1.12
SS18-209ENST00000578595 LRRC8DQ7L1W4 858 aa22.05■■□□□ 1.12
SS18-209ENST00000578595 TRMT1LQ7Z2T5 733 aaKnown RBP22.05■■□□□ 1.12
SS18-209ENST00000578595 AFAP1L1Q8TED9 768 aa22.05■■□□□ 1.12
SS18-209ENST00000578595 LMBR1Q8WVP7 490 aa22.05■■□□□ 1.12
SS18-209ENST00000578595 GJA10Q969M2 543 aa22.05■■□□□ 1.12
SS18-209ENST00000578595 LENG9Q96B70 501 aa22.05■■□□□ 1.12
SS18-209ENST00000578595 MTIF3Q9H2K0 278 aaKnown RBP22.05■■□□□ 1.12
SS18-209ENST00000578595 ZNF302Q9NR11 478 aa22.05■■□□□ 1.12
SS18-209ENST00000578595 FAM205CA6NFA0 338 aa22.04■■□□□ 1.12
SS18-209ENST00000578595 DHX15O43143 795 aaKnown RBP22.04■■□□□ 1.12
SS18-209ENST00000578595 LGR5O75473 907 aa22.04■■□□□ 1.12
SS18-209ENST00000578595 FGBP02675 491 aa22.04■■□□□ 1.12
SS18-209ENST00000578595 CKBP12277 381 aa22.04■■□□□ 1.12
SS18-209ENST00000578595 SELPP16109 830 aa22.04■■□□□ 1.12
SS18-209ENST00000578595 GRIK4Q16099 956 aa22.04■■□□□ 1.12
SS18-209ENST00000578595 TMEM240Q5SV17 173 aa22.04■■□□□ 1.12
SS18-209ENST00000578595 ZNF746Q6NUN9 644 aaPredicted RBP22.04■■□□□ 1.12
SS18-209ENST00000578595 PDXDC2PQ6P474 469 aa22.04■■□□□ 1.12
SS18-209ENST00000578595 OTOP2Q7RTS6 562 aa22.04■■□□□ 1.12
SS18-209ENST00000578595 CTAGE1Q96RT6 745 aa22.04■■□□□ 1.12
SS18-209ENST00000578595 PCYT2Q99447 389 aa22.04■■□□□ 1.12
SS18-209ENST00000578595 NRCAMQ92823 1304 aa22.04■■□□□ 1.12
SS18-209ENST00000578595 WDR64B1ANS9 1081 aa22.03■■□□□ 1.12
SS18-209ENST00000578595 BTBD18B2RXH4 712 aa22.03■■□□□ 1.12
SS18-209ENST00000578595 PSAPP07602 524 aa22.03■■□□□ 1.12
SS18-209ENST00000578595 CTSHP09668 335 aa22.03■■□□□ 1.12
SS18-209ENST00000578595 RFC2P35250 354 aa22.03■■□□□ 1.12
SS18-209ENST00000578595 Q4G0T1 1027 aa22.03■■□□□ 1.12
SS18-209ENST00000578595 SWSAP1Q6NVH7 229 aa22.03■■□□□ 1.12
SS18-209ENST00000578595 MOXD1Q6UVY6 613 aa22.03■■□□□ 1.12
SS18-209ENST00000578595 SERINC5Q86VE9 423 aa22.03■■□□□ 1.12
SS18-209ENST00000578595 CCDC60Q8IWA6 550 aaPredicted RBP22.03■■□□□ 1.12
SS18-209ENST00000578595 SMAP1Q8IYB5 467 aaPredicted RBP22.03■■□□□ 1.12
SS18-209ENST00000578595 TNPO1Q92973 898 aaKnown RBP22.03■■□□□ 1.12
SS18-209ENST00000578595 WNT8BQ93098 351 aa22.03■■□□□ 1.12
SS18-209ENST00000578595 NAP1L4Q99733 375 aaKnown RBP22.03■■□□□ 1.12
SS18-209ENST00000578595 TUBE1Q9UJT0 475 aa22.03■■□□□ 1.12
SS18-209ENST00000578595 SIP14410 1827 aa22.02■■□□□ 1.12
SS18-209ENST00000578595 SLC37A4O43826 429 aa22.02■■□□□ 1.12
SS18-209ENST00000578595 EDIL3O43854 480 aa22.02■■□□□ 1.12
SS18-209ENST00000578595 CD2BP2O95400 341 aaKnown RBP22.02■■□□□ 1.12
SS18-209ENST00000578595 ACTN1P12814 892 aa22.02■■□□□ 1.12
SS18-209ENST00000578595 GCFC2P16383 781 aaKnown RBP22.02■■□□□ 1.12
SS18-209ENST00000578595 MCM2P49736 904 aa22.02■■□□□ 1.12
SS18-209ENST00000578595 PLCB4Q15147 1175 aa22.02■■□□□ 1.12
SS18-209ENST00000578595 ZNF618Q5T7W0 954 aa22.02■■□□□ 1.12
SS18-209ENST00000578595 ABHD15Q6UXT9 468 aa22.02■■□□□ 1.12
SS18-209ENST00000578595 C16orf59Q7L2K0 433 aa22.02■■□□□ 1.12
SS18-209ENST00000578595 PLPPR4Q7Z2D5 763 aa22.02■■□□□ 1.12
SS18-209ENST00000578595 SLC5A5Q92911 643 aa22.02■■□□□ 1.12
SS18-209ENST00000578595 TMX3Q96JJ7 454 aa22.02■■□□□ 1.12
SS18-209ENST00000578595 RIT2Q99578 217 aa22.02■■□□□ 1.12
SS18-209ENST00000578595 KIF3AQ9Y496 699 aa22.02■■□□□ 1.12
SS18-209ENST00000578595 MYO9BQ13459 2157 aa22.01■■□□□ 1.11
SS18-209ENST00000578595 POTEB3A0JP26 581 aa22.01■■□□□ 1.11
SS18-209ENST00000578595 PFKMP08237 780 aa22.01■■□□□ 1.11
SS18-209ENST00000578595 INSRRP14616 1297 aa22.01■■□□□ 1.11
SS18-209ENST00000578595 ATP2B1P20020 1258 aa22.01■■□□□ 1.11
SS18-209ENST00000578595 EARS2Q5JPH6 523 aaKnown RBP22.01■■□□□ 1.11
SS18-209ENST00000578595 POTEBQ6S5H4 581 aa22.01■■□□□ 1.11
SS18-209ENST00000578595 MIER3Q7Z3K6 550 aa22.01■■□□□ 1.11
SS18-209ENST00000578595 IL27Q8NEV9 243 aa22.01■■□□□ 1.11
SS18-209ENST00000578595 DISC1Q9NRI5 854 aa22.01■■□□□ 1.11
SS18-209ENST00000578595 GABBR1Q9UBS5 961 aa22.01■■□□□ 1.11
SS18-209ENST00000578595 PCDHA10Q9Y5I2 948 aa22.01■■□□□ 1.11
SS18-209ENST00000578595 MICAL3Q7RTP6 2002 aa22.01■■□□□ 1.11
SS18-209ENST00000578595 CYP3A7-CYP3A51PA0A087WV96 503 aa22■■□□□ 1.11
SS18-209ENST00000578595 ATG7O95352 703 aa22■■□□□ 1.11
SS18-209ENST00000578595 CYP3A7P24462 503 aa22■■□□□ 1.11
SS18-209ENST00000578595 HOXC8P31273 242 aa22■■□□□ 1.11
SS18-209ENST00000578595 SLC26A2P50443 739 aa22■■□□□ 1.11
SS18-209ENST00000578595 JAK3P52333 1124 aa22■■□□□ 1.11
SS18-209ENST00000578595 TRAPPC12Q8WVT3 735 aa22■■□□□ 1.11
SS18-209ENST00000578595 FAM49AQ9H0Q0 323 aaPredicted RBP22■■□□□ 1.11
SS18-209ENST00000578595 UNC45AQ9H3U1 944 aa22■■□□□ 1.11
SS18-209ENST00000578595 RRN3P2A6NIE6 340 aa21.99■■□□□ 1.11
SS18-209ENST00000578595 RSPH10B2B2RC85 870 aa21.99■■□□□ 1.11
SS18-209ENST00000578595 RSPH10BP0C881 870 aa21.99■■□□□ 1.11
SS18-209ENST00000578595 SFNP31947 248 aa21.99■■□□□ 1.11
SS18-209ENST00000578595 RBL2Q08999 1139 aa21.99■■□□□ 1.11
SS18-209ENST00000578595 TRIM71Q2Q1W2 868 aaKnown RBP21.99■■□□□ 1.11
SS18-209ENST00000578595 PPP4R3AQ6IN85 833 aa21.99■■□□□ 1.11
SS18-209ENST00000578595 RSPH3Q86UC2 560 aa21.99■■□□□ 1.11
SS18-209ENST00000578595 POTEDQ86YR6 584 aa21.99■■□□□ 1.11
SS18-209ENST00000578595 ZBTB10Q96DT7 871 aa21.99■■□□□ 1.11
SS18-209ENST00000578595 IGKV6D-21A0A0A0MT36 114 aa21.98■■□□□ 1.11
SS18-209ENST00000578595 BAG4O95429 457 aaKnown RBP21.98■■□□□ 1.11
SS18-209ENST00000578595 PARNO95453 639 aaKnown RBP21.98■■□□□ 1.11
SS18-209ENST00000578595 RUFY4Q6ZNE9 571 aa21.98■■□□□ 1.11
SS18-209ENST00000578595 ETNPPLQ8TBG4 499 aa21.98■■□□□ 1.11
SS18-209ENST00000578595 ATP8B4Q8TF62 1192 aa21.98■■□□□ 1.11
SS18-209ENST00000578595 HERVK_113Q902F9 699 aa21.98■■□□□ 1.11
SS18-209ENST00000578595 TNFRSF25Q93038 417 aa21.98■■□□□ 1.11
SS18-209ENST00000578595 MBOAT7Q96N66 472 aa21.98■■□□□ 1.11
SS18-209ENST00000578595 PTPRSQ13332 1948 aa21.98■■□□□ 1.11
SS18-209ENST00000578595 HBP1O60381 514 aa21.97■■□□□ 1.11
SS18-209ENST00000578595 PSMD10O75832 226 aa21.97■■□□□ 1.11
SS18-209ENST00000578595 TAF2Q6P1X5 1199 aa21.97■■□□□ 1.11
SS18-209ENST00000578595 DNAJB3Q8WWF6 145 aa21.97■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms