RNA–Protein interactions for RNA: ENST00000577751.5

SS18-208, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-208ENST00000577751 MARK3P27448 753 aa21.86■■□□□ 1.09
SS18-208ENST00000577751 SAFBQ15424 915 aaKnown RBP eCLIP21.86■■□□□ 1.09
SS18-208ENST00000577751 LRCH2Q5VUJ6 765 aa21.86■■□□□ 1.09
SS18-208ENST00000577751 MIS18BP1Q6P0N0 1132 aa21.86■■□□□ 1.09
SS18-208ENST00000577751 B3GNT9Q6UX72 402 aa21.86■■□□□ 1.09
SS18-208ENST00000577751 CCDC60Q8IWA6 550 aaPredicted RBP21.86■■□□□ 1.09
SS18-208ENST00000577751 CCDC155Q8N6L0 562 aa21.86■■□□□ 1.09
SS18-208ENST00000577751 LMBR1Q8WVP7 490 aa21.86■■□□□ 1.09
SS18-208ENST00000577751 ATP6V0A1Q93050 837 aa21.86■■□□□ 1.09
SS18-208ENST00000577751 WNT8BQ93098 351 aa21.86■■□□□ 1.09
SS18-208ENST00000577751 GJA10Q969M2 543 aa21.86■■□□□ 1.09
SS18-208ENST00000577751 VWCEQ96DN2 955 aa21.86■■□□□ 1.09
SS18-208ENST00000577751 SCLYQ96I15 445 aa21.86■■□□□ 1.09
SS18-208ENST00000577751 TEKT3Q9BXF9 490 aa21.86■■□□□ 1.09
SS18-208ENST00000577751 KCNMB3Q9NPA1 279 aa21.86■■□□□ 1.09
SS18-208ENST00000577751 IL23AQ9NPF7 189 aa21.86■■□□□ 1.09
SS18-208ENST00000577751 PCDHA10Q9Y5I2 948 aa21.86■■□□□ 1.09
SS18-208ENST00000577751 SCN5AQ14524 2016 aa21.85■■□□□ 1.09
SS18-208ENST00000577751 MYH9P35579 1960 aaKnown RBP21.85■■□□□ 1.09
SS18-208ENST00000577751 CCNT1O60563 726 aaKnown RBP21.85■■□□□ 1.09
SS18-208ENST00000577751 GAS7O60861 476 aa21.85■■□□□ 1.09
SS18-208ENST00000577751 IQCF3P0C7M6 154 aa21.85■■□□□ 1.09
SS18-208ENST00000577751 PLCB4Q15147 1175 aa21.85■■□□□ 1.09
SS18-208ENST00000577751 LRIT3Q3SXY7 679 aa21.85■■□□□ 1.09
SS18-208ENST00000577751 RETREG2Q8NC44 543 aa21.85■■□□□ 1.09
SS18-208ENST00000577751 FAM20AQ96MK3 541 aa21.85■■□□□ 1.09
SS18-208ENST00000577751 FOXP1Q9H334 677 aaPredicted RBP21.85■■□□□ 1.09
SS18-208ENST00000577751 MAFBQ9Y5Q3 323 aaPredicted RBP21.85■■□□□ 1.09
SS18-208ENST00000577751 LAMA3Q16787 3333 aa21.85■■□□□ 1.09
SS18-208ENST00000577751 TBX3O15119 743 aa21.84■■□□□ 1.09
SS18-208ENST00000577751 CKBP12277 381 aa21.84■■□□□ 1.09
SS18-208ENST00000577751 FXR1P51114 621 aaKnown RBP eCLIP21.84■■□□□ 1.09
SS18-208ENST00000577751 PPFIA1Q13136 1202 aa21.84■■□□□ 1.09
SS18-208ENST00000577751 TMEM240Q5SV17 173 aa21.84■■□□□ 1.09
SS18-208ENST00000577751 MARCH8Q5T0T0 291 aa21.84■■□□□ 1.09
SS18-208ENST00000577751 FAM160B1Q5W0V3 765 aa21.84■■□□□ 1.09
SS18-208ENST00000577751 SWSAP1Q6NVH7 229 aa21.84■■□□□ 1.09
SS18-208ENST00000577751 TNPO1Q92973 898 aaKnown RBP21.84■■□□□ 1.09
SS18-208ENST00000577751 BUD13Q9BRD0 619 aaKnown RBP eCLIP21.84■■□□□ 1.09
SS18-208ENST00000577751 UNC45AQ9H3U1 944 aa21.84■■□□□ 1.09
SS18-208ENST00000577751 ZNF302Q9NR11 478 aa21.84■■□□□ 1.09
SS18-208ENST00000577751 TCEAL9Q9UHQ7 104 aa21.84■■□□□ 1.09
SS18-208ENST00000577751 MBLAC1A4D2B0 266 aaPredicted RBP21.83■■□□□ 1.09
SS18-208ENST00000577751 WDR64B1ANS9 1081 aa21.83■■□□□ 1.09
SS18-208ENST00000577751 BACH1O14867 736 aa21.83■■□□□ 1.09
SS18-208ENST00000577751 PSAPP07602 524 aa21.83■■□□□ 1.09
SS18-208ENST00000577751 INSRRP14616 1297 aa21.83■■□□□ 1.09
SS18-208ENST00000577751 SELPP16109 830 aa21.83■■□□□ 1.09
SS18-208ENST00000577751 ATP4AP20648 1035 aa21.83■■□□□ 1.09
SS18-208ENST00000577751 SFNP31947 248 aa21.83■■□□□ 1.09
SS18-208ENST00000577751 RFC2P35250 354 aa21.83■■□□□ 1.09
SS18-208ENST00000577751 CUL4AQ13619 759 aa21.83■■□□□ 1.09
SS18-208ENST00000577751 GRIK4Q16099 956 aa21.83■■□□□ 1.09
SS18-208ENST00000577751 TRAF7Q6Q0C0 670 aa21.83■■□□□ 1.09
SS18-208ENST00000577751 RPUSD2Q8IZ73 545 aaKnown RBP21.83■■□□□ 1.09
SS18-208ENST00000577751 HAS1Q92839 578 aa21.83■■□□□ 1.09
SS18-208ENST00000577751 DISC1Q9NRI5 854 aa21.83■■□□□ 1.09
SS18-208ENST00000577751 KIF3AQ9Y496 699 aa21.83■■□□□ 1.09
SS18-208ENST00000577751 POTEB3A0JP26 581 aa21.82■■□□□ 1.08
SS18-208ENST00000577751 RRN3P2A6NIE6 340 aa21.82■■□□□ 1.08
SS18-208ENST00000577751 PFKMP08237 780 aa21.82■■□□□ 1.08
SS18-208ENST00000577751 ACRP10323 421 aa21.82■■□□□ 1.08
SS18-208ENST00000577751 GPNMBQ14956 572 aa21.82■■□□□ 1.08
SS18-208ENST00000577751 PDXDC2PQ6P474 469 aa21.82■■□□□ 1.08
SS18-208ENST00000577751 PSRC1Q6PGN9 363 aaPredicted RBP21.82■■□□□ 1.08
SS18-208ENST00000577751 POTEBQ6S5H4 581 aa21.82■■□□□ 1.08
SS18-208ENST00000577751 ZNF365Q70YC5 407 aa21.82■■□□□ 1.08
SS18-208ENST00000577751 LRRC8DQ7L1W4 858 aa21.82■■□□□ 1.08
SS18-208ENST00000577751 RDM1Q8NG50 284 aa21.82■■□□□ 1.08
SS18-208ENST00000577751 SAMM50Q9Y512 469 aa21.82■■□□□ 1.08
SS18-208ENST00000577751 WNT7AO00755 349 aa21.81■■□□□ 1.08
SS18-208ENST00000577751 PARNO95453 639 aaKnown RBP21.81■■□□□ 1.08
SS18-208ENST00000577751 GJB2P29033 226 aa21.81■■□□□ 1.08
SS18-208ENST00000577751 JAK3P52333 1124 aa21.81■■□□□ 1.08
SS18-208ENST00000577751 ZNF618Q5T7W0 954 aa21.81■■□□□ 1.08
SS18-208ENST00000577751 RASIP1Q5U651 963 aa21.81■■□□□ 1.08
SS18-208ENST00000577751 POTEDQ86YR6 584 aa21.81■■□□□ 1.08
SS18-208ENST00000577751 ATP8B4Q8TF62 1192 aa21.81■■□□□ 1.08
SS18-208ENST00000577751 GABBR1Q9UBS5 961 aa21.81■■□□□ 1.08
SS18-208ENST00000577751 TRPC6Q9Y210 931 aa21.81■■□□□ 1.08
SS18-208ENST00000577751 ZSCAN21Q9Y5A6 473 aaPredicted RBP21.81■■□□□ 1.08
SS18-208ENST00000577751 IGSF9BQ9UPX0 1349 aa21.8■■□□□ 1.08
SS18-208ENST00000577751 SOX1O00570 391 aaPredicted RBP21.8■■□□□ 1.08
SS18-208ENST00000577751 HBP1O60381 514 aa21.8■■□□□ 1.08
SS18-208ENST00000577751 CAND2O75155 1236 aa21.8■■□□□ 1.08
SS18-208ENST00000577751 FGBP02675 491 aa21.8■■□□□ 1.08
SS18-208ENST00000577751 U2AF2P26368 475 aaKnown RBP eCLIP21.8■■□□□ 1.081e-7■■■□□ 18.2
SS18-208ENST00000577751 PPP2R5CQ13362 524 aa21.8■■□□□ 1.08
SS18-208ENST00000577751 RPAINQ86UA6 219 aa21.8■■□□□ 1.08
SS18-208ENST00000577751 TUBE1Q9UJT0 475 aa21.8■■□□□ 1.08
SS18-208ENST00000577751 VAV3Q9UKW4 847 aa21.8■■□□□ 1.08
SS18-208ENST00000577751 TET1Q8NFU7 2136 aa21.79■■□□□ 1.08
SS18-208ENST00000577751 KIF28PB7ZC32 967 aa21.79■■□□□ 1.08
SS18-208ENST00000577751 CHMP2AO43633 222 aa21.79■■□□□ 1.08
SS18-208ENST00000577751 THPOP40225 353 aa21.79■■□□□ 1.08
SS18-208ENST00000577751 TAF2Q6P1X5 1199 aa21.79■■□□□ 1.08
SS18-208ENST00000577751 MIER3Q7Z3K6 550 aa21.79■■□□□ 1.08
SS18-208ENST00000577751 NOSTRINQ8IVI9 506 aa21.79■■□□□ 1.08
SS18-208ENST00000577751 SLFN12Q8IYM2 578 aa21.79■■□□□ 1.08
SS18-208ENST00000577751 BBXQ8WY36 941 aaPredicted RBP21.79■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms