RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 RUFY4Q6ZNE9 571 aa19.11■□□□□ 0.65
VPS53-218ENST00000575207 KDF1Q8NAX2 398 aaPredicted RBP19.11■□□□□ 0.65
VPS53-218ENST00000575207 DDX1Q92499 740 aaKnown RBP19.11■□□□□ 0.65
VPS53-218ENST00000575207 ARHGAP45Q92619 1136 aa19.11■□□□□ 0.65
VPS53-218ENST00000575207 ACSF2Q96CM8 615 aaPredicted RBP19.11■□□□□ 0.65
VPS53-218ENST00000575207 IWS1Q96ST2 819 aa19.11■□□□□ 0.65
VPS53-218ENST00000575207 FBXO4Q9UKT5 387 aa19.11■□□□□ 0.65
VPS53-218ENST00000575207 MRVI1Q9Y6F6 885 aa19.11■□□□□ 0.65
VPS53-218ENST00000575207 NARSO43776 548 aaKnown RBP19.1■□□□□ 0.65
VPS53-218ENST00000575207 BCAR3O75815 825 aa19.1■□□□□ 0.65
VPS53-218ENST00000575207 CFHP08603 1231 aa19.1■□□□□ 0.65
VPS53-218ENST00000575207 TSPY3P0CV98 308 aa19.1■□□□□ 0.65
VPS53-218ENST00000575207 TSPY8P0CW00 308 aa19.1■□□□□ 0.65
VPS53-218ENST00000575207 MGAT3Q09327 533 aa19.1■□□□□ 0.65
VPS53-218ENST00000575207 APOBRQ0VD83 1088 aa19.1■□□□□ 0.65
VPS53-218ENST00000575207 ZBTB44Q8NCP5 570 aa19.1■□□□□ 0.65
VPS53-218ENST00000575207 NSUN6Q8TEA1 469 aaKnown RBP19.1■□□□□ 0.65
VPS53-218ENST00000575207 TCF25Q9BQ70 676 aa19.1■□□□□ 0.65
VPS53-218ENST00000575207 MAF1Q9H063 256 aa19.1■□□□□ 0.65
VPS53-218ENST00000575207 MRS2Q9HD23 443 aa19.1■□□□□ 0.65
VPS53-218ENST00000575207 IGSF9Q9P2J2 1179 aa19.1■□□□□ 0.65
VPS53-218ENST00000575207 GSG1L2A8MUP6 293 aa19.09■□□□□ 0.65
VPS53-218ENST00000575207 LILRB5O75023 590 aa19.09■□□□□ 0.65
VPS53-218ENST00000575207 CHGBP05060 677 aa19.09■□□□□ 0.65
VPS53-218ENST00000575207 GLULP15104 373 aa19.09■□□□□ 0.65
VPS53-218ENST00000575207 SLC16A2P36021 539 aa19.09■□□□□ 0.65
VPS53-218ENST00000575207 GATMP50440 423 aa19.09■□□□□ 0.65
VPS53-218ENST00000575207 PLCB3Q01970 1234 aa19.09■□□□□ 0.65
VPS53-218ENST00000575207 FBXO47Q5MNV8 452 aa19.09■□□□□ 0.65
VPS53-218ENST00000575207 N4BP2L1Q5TBK1 243 aaPredicted RBP19.09■□□□□ 0.65
VPS53-218ENST00000575207 OTOP3Q7RTS5 596 aa19.09■□□□□ 0.65
VPS53-218ENST00000575207 THNSL1Q8IYQ7 743 aa19.09■□□□□ 0.65
VPS53-218ENST00000575207 ATRIPQ8WXE1 791 aa19.09■□□□□ 0.65
VPS53-218ENST00000575207 MRPS27Q92552 414 aaKnown RBP19.09■□□□□ 0.65
VPS53-218ENST00000575207 SPATA33Q96N06 139 aa19.09■□□□□ 0.65
VPS53-218ENST00000575207 DDX24Q9GZR7 859 aaKnown RBP eCLIP19.09■□□□□ 0.653e-7■■■■□ 22.8
VPS53-218ENST00000575207 PUS7LQ9H0K6 701 aaKnown RBP19.09■□□□□ 0.65
VPS53-218ENST00000575207 SETD4Q9NVD3 440 aa19.09■□□□□ 0.65
VPS53-218ENST00000575207 WDFY3Q8IZQ1 3526 aa19.09■□□□□ 0.65
VPS53-218ENST00000575207 TBC1D4O60343 1298 aa19.08■□□□□ 0.64
VPS53-218ENST00000575207 EIF3JO75822 258 aaKnown RBP19.08■□□□□ 0.64
VPS53-218ENST00000575207 PPP4R3BQ5MIZ7 849 aa19.08■□□□□ 0.64
VPS53-218ENST00000575207 CELF3Q5SZQ8 465 aaKnown RBP19.08■□□□□ 0.64
VPS53-218ENST00000575207 RARS2Q5T160 578 aaKnown RBP19.08■□□□□ 0.64
VPS53-218ENST00000575207 SYDE2Q5VT97 1194 aa19.08■□□□□ 0.64
VPS53-218ENST00000575207 TTBK2Q6IQ55 1244 aa19.08■□□□□ 0.64
VPS53-218ENST00000575207 GPR20Q99678 358 aa19.08■□□□□ 0.64
VPS53-218ENST00000575207 FTHL17Q9BXU8 183 aa19.08■□□□□ 0.64
VPS53-218ENST00000575207 PUF60Q9UHX1 559 aaKnown RBP19.08■□□□□ 0.64
VPS53-218ENST00000575207 LOC400499M0QZD8 3231 aa19.08■□□□□ 0.64
VPS53-218ENST00000575207 WDR19Q8NEZ3 1342 aa19.07■□□□□ 0.64
VPS53-218ENST00000575207 ZIC2O95409 532 aaPredicted RBP19.07■□□□□ 0.64
VPS53-218ENST00000575207 TSHZ1Q6ZSZ6 1077 aa19.07■□□□□ 0.64
VPS53-218ENST00000575207 NELL1Q92832 810 aa19.07■□□□□ 0.64
VPS53-218ENST00000575207 TAAR1Q96RJ0 339 aa19.07■□□□□ 0.64
VPS53-218ENST00000575207 STRBPQ96SI9 672 aaKnown RBP19.07■□□□□ 0.64
VPS53-218ENST00000575207 ENTPD7Q9NQZ7 604 aa19.07■□□□□ 0.64
VPS53-218ENST00000575207 DYNC1LI1Q9Y6G9 523 aaKnown RBP19.07■□□□□ 0.64
VPS53-218ENST00000575207 DENND4AQ7Z401 1863 aa19.07■□□□□ 0.64
VPS53-218ENST00000575207 LOC105378220A0A1B0GUY1 285 aaPredicted RBP19.06■□□□□ 0.64
VPS53-218ENST00000575207 C1QTNF9BB2RNN3 333 aa19.06■□□□□ 0.64
VPS53-218ENST00000575207 C1QTNF9P0C862 333 aa19.06■□□□□ 0.64
VPS53-218ENST00000575207 TFAP4Q01664 338 aa19.06■□□□□ 0.64
VPS53-218ENST00000575207 SPOUT1Q5T280 376 aaKnown RBP19.06■□□□□ 0.64
VPS53-218ENST00000575207 UNQ6494/PRO21346Q6UXR6 183 aa19.06■□□□□ 0.64
VPS53-218ENST00000575207 COLGALT1Q8NBJ5 622 aa19.06■□□□□ 0.64
VPS53-218ENST00000575207 DCAF4Q8WV16 495 aa19.06■□□□□ 0.64
VPS53-218ENST00000575207 AGO3Q9H9G7 860 aaKnown RBP19.06■□□□□ 0.64
VPS53-218ENST00000575207 IGSF5Q9NSI5 407 aa19.06■□□□□ 0.64
VPS53-218ENST00000575207 PAG1Q9NWQ8 432 aa19.06■□□□□ 0.64
VPS53-218ENST00000575207 GMEB2Q9UKD1 530 aa19.06■□□□□ 0.64
VPS53-218ENST00000575207 CA14Q9ULX7 337 aa19.06■□□□□ 0.64
VPS53-218ENST00000575207 STX8Q9UNK0 236 aa19.06■□□□□ 0.64
VPS53-218ENST00000575207 DMXL2Q8TDJ6 3036 aa19.06■□□□□ 0.64
VPS53-218ENST00000575207 LGALS2P05162 132 aa19.05■□□□□ 0.64
VPS53-218ENST00000575207 SCG2P13521 617 aa19.05■□□□□ 0.64
VPS53-218ENST00000575207 C12orf76Q8N812 135 aaPredicted RBP19.05■□□□□ 0.64
VPS53-218ENST00000575207 SYTL5Q8TDW5 730 aaPredicted RBP19.05■□□□□ 0.64
VPS53-218ENST00000575207 ZSCAN32Q9NX65 697 aa19.05■□□□□ 0.64
VPS53-218ENST00000575207 COL20A1Q9P218 1284 aa19.05■□□□□ 0.64
VPS53-218ENST00000575207 TAF4O00268 1085 aa19.04■□□□□ 0.64
VPS53-218ENST00000575207 RING1Q06587 406 aa19.04■□□□□ 0.64
VPS53-218ENST00000575207 CCDC96Q2M329 555 aa19.04■□□□□ 0.64
VPS53-218ENST00000575207 KANK3Q6NY19 840 aa19.04■□□□□ 0.64
VPS53-218ENST00000575207 TAF2Q6P1X5 1199 aa19.04■□□□□ 0.64
VPS53-218ENST00000575207 KCNV1Q6PIU1 500 aa19.04■□□□□ 0.64
VPS53-218ENST00000575207 MRPL43Q8N983 215 aaKnown RBP19.04■□□□□ 0.64
VPS53-218ENST00000575207 PJA1Q8NG27 643 aa19.04■□□□□ 0.64
VPS53-218ENST00000575207 LMBR1Q8WVP7 490 aa19.04■□□□□ 0.64
VPS53-218ENST00000575207 RMDN3Q96TC7 470 aa19.04■□□□□ 0.64
VPS53-218ENST00000575207 DZANK1Q9NVP4 752 aa19.04■□□□□ 0.64
VPS53-218ENST00000575207 LHX6Q9UPM6 363 aa19.04■□□□□ 0.64
VPS53-218ENST00000575207 LRP3O75074 770 aa19.03■□□□□ 0.64
VPS53-218ENST00000575207 CLASP2O75122 1294 aaKnown RBP19.03■□□□□ 0.64
VPS53-218ENST00000575207 GGPS1O95749 300 aa19.03■□□□□ 0.64
VPS53-218ENST00000575207 CT47B1P0C2W7 299 aaPredicted RBP19.03■□□□□ 0.64
VPS53-218ENST00000575207 SRFP11831 508 aa19.03■□□□□ 0.64
VPS53-218ENST00000575207 CD52P31358 61 aa19.03■□□□□ 0.64
VPS53-218ENST00000575207 SLFN5Q08AF3 891 aa19.03■□□□□ 0.64
VPS53-218ENST00000575207 SPEM2Q0P670 501 aa19.03■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms