RNA–Protein interactions for RNA: ENST00000569336.2

CLN6-209, Transcript of CLN6, transmembrane ER protein, humanhuman

Gene CLN6, Length 557 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-209ENST00000569336 DDX39AO00148 427 aaKnown RBP11.11□□□□□ -0.63
CLN6-209ENST00000569336 BACH1O14867 736 aa11.11□□□□□ -0.63
CLN6-209ENST00000569336 GAS7O60861 476 aa11.11□□□□□ -0.63
CLN6-209ENST00000569336 CAND2O75155 1236 aa11.11□□□□□ -0.63
CLN6-209ENST00000569336 ACTN1P12814 892 aa11.11□□□□□ -0.63
CLN6-209ENST00000569336 CYP3A7P24462 503 aa11.11□□□□□ -0.63
CLN6-209ENST00000569336 CCL23P55773 120 aa11.11□□□□□ -0.63
CLN6-209ENST00000569336 PPFIA1Q13136 1202 aa11.11□□□□□ -0.63
CLN6-209ENST00000569336 INF2Q27J81 1249 aa11.11□□□□□ -0.63
CLN6-209ENST00000569336 Q4G0T1 1027 aa11.11□□□□□ -0.63
CLN6-209ENST00000569336 LRCH2Q5VUJ6 765 aa11.11□□□□□ -0.63
CLN6-209ENST00000569336 MIS18BP1Q6P0N0 1132 aa11.11□□□□□ -0.63
CLN6-209ENST00000569336 PLPPR4Q7Z2D5 763 aa11.11□□□□□ -0.63
CLN6-209ENST00000569336 SERINC5Q86VE9 423 aa11.11□□□□□ -0.63
CLN6-209ENST00000569336 PPP1R13LQ8WUF5 828 aa11.11□□□□□ -0.63
CLN6-209ENST00000569336 LMBR1Q8WVP7 490 aa11.11□□□□□ -0.63
CLN6-209ENST00000569336 LENG9Q96B70 501 aa11.11□□□□□ -0.63
CLN6-209ENST00000569336 C8orf76Q96K31 380 aa11.11□□□□□ -0.63
CLN6-209ENST00000569336 TEKT3Q9BXF9 490 aa11.11□□□□□ -0.63
CLN6-209ENST00000569336 BACH2Q9BYV9 841 aa11.11□□□□□ -0.63
CLN6-209ENST00000569336 DDX25Q9UHL0 483 aaKnown RBP11.11□□□□□ -0.63
CLN6-209ENST00000569336 REV3LO60673 3130 aa11.11□□□□□ -0.63
CLN6-209ENST00000569336 TDP2O95551 362 aa11.1□□□□□ -0.63
CLN6-209ENST00000569336 PSAPP07602 524 aa11.1□□□□□ -0.63
CLN6-209ENST00000569336 SELPP16109 830 aa11.1□□□□□ -0.63
CLN6-209ENST00000569336 MARK3P27448 753 aa11.1□□□□□ -0.63
CLN6-209ENST00000569336 SFNP31947 248 aa11.1□□□□□ -0.63
CLN6-209ENST00000569336 STAT5BP51692 787 aa11.1□□□□□ -0.63
CLN6-209ENST00000569336 JAK3P52333 1124 aa11.1□□□□□ -0.63
CLN6-209ENST00000569336 ST3GAL1Q11201 340 aa11.1□□□□□ -0.63
CLN6-209ENST00000569336 SHHQ15465 462 aa11.1□□□□□ -0.63
CLN6-209ENST00000569336 LETM2Q2VYF4 491 aa11.1□□□□□ -0.63
CLN6-209ENST00000569336 KRT40Q6A162 431 aa11.1□□□□□ -0.63
CLN6-209ENST00000569336 PPP4R3AQ6IN85 833 aa11.1□□□□□ -0.63
CLN6-209ENST00000569336 GPR153Q6NV75 609 aa11.1□□□□□ -0.63
CLN6-209ENST00000569336 TAF2Q6P1X5 1199 aa11.1□□□□□ -0.63
CLN6-209ENST00000569336 PIK3AP1Q6ZUJ8 805 aa11.1□□□□□ -0.63
CLN6-209ENST00000569336 LRRC8DQ7L1W4 858 aa11.1□□□□□ -0.63
CLN6-209ENST00000569336 DIS3L2Q8IYB7 885 aaKnown RBP11.1□□□□□ -0.63
CLN6-209ENST00000569336 RDM1Q8NG50 284 aa11.1□□□□□ -0.63
CLN6-209ENST00000569336 SLC5A5Q92911 643 aa11.1□□□□□ -0.63
CLN6-209ENST00000569336 CTAGE1Q96RT6 745 aa11.1□□□□□ -0.63
CLN6-209ENST00000569336 TUBE1Q9UJT0 475 aa11.1□□□□□ -0.63
CLN6-209ENST00000569336 TRPC6Q9Y210 931 aa11.1□□□□□ -0.63
CLN6-209ENST00000569336 SAMM50Q9Y512 469 aa11.1□□□□□ -0.63
CLN6-209ENST00000569336 PRUNE2Q8WUY3 3088 aa11.1□□□□□ -0.63
CLN6-209ENST00000569336 COL1A2P08123 1366 aa11.1□□□□□ -0.63
CLN6-209ENST00000569336 IGKV6D-21A0A0A0MT36 114 aa11.09□□□□□ -0.63
CLN6-209ENST00000569336 RRN3P2A6NIE6 340 aa11.09□□□□□ -0.63
CLN6-209ENST00000569336 TBX3O15119 743 aa11.09□□□□□ -0.63
CLN6-209ENST00000569336 MSH4O15457 936 aa11.09□□□□□ -0.63
CLN6-209ENST00000569336 DHX15O43143 795 aaKnown RBP11.09□□□□□ -0.63
CLN6-209ENST00000569336 CCNT1O60563 726 aaKnown RBP11.09□□□□□ -0.63
CLN6-209ENST00000569336 ATG7O95352 703 aa11.09□□□□□ -0.63
CLN6-209ENST00000569336 CCNE2O96020 404 aa11.09□□□□□ -0.63
CLN6-209ENST00000569336 FGBP02675 491 aa11.09□□□□□ -0.63
CLN6-209ENST00000569336 IQCF3P0C7M6 154 aa11.09□□□□□ -0.63
CLN6-209ENST00000569336 CKBP12277 381 aa11.09□□□□□ -0.63
CLN6-209ENST00000569336 COL9A1P20849 921 aa11.09□□□□□ -0.63
CLN6-209ENST00000569336 GNL2Q13823 731 aaKnown RBP11.09□□□□□ -0.63
CLN6-209ENST00000569336 GRIK4Q16099 956 aa11.09□□□□□ -0.63
CLN6-209ENST00000569336 C9orf50Q5SZB4 431 aa11.09□□□□□ -0.63
CLN6-209ENST00000569336 ABHD15Q6UXT9 468 aa11.09□□□□□ -0.63
CLN6-209ENST00000569336 RSPH3Q86UC2 560 aa11.09□□□□□ -0.63
CLN6-209ENST00000569336 OXER1Q8TDS5 423 aa11.09□□□□□ -0.63
CLN6-209ENST00000569336 DHX38Q92620 1227 aaKnown RBP11.09□□□□□ -0.63
CLN6-209ENST00000569336 SCLYQ96I15 445 aa11.09□□□□□ -0.63
CLN6-209ENST00000569336 FAM167AQ96KS9 214 aa11.09□□□□□ -0.63
CLN6-209ENST00000569336 MBOAT7Q96N66 472 aa11.09□□□□□ -0.63
CLN6-209ENST00000569336 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.09□□□□□ -0.63
CLN6-209ENST00000569336 RNPEPQ9H4A4 650 aa11.09□□□□□ -0.63
CLN6-209ENST00000569336 ZNF302Q9NR11 478 aa11.09□□□□□ -0.63
CLN6-209ENST00000569336 GJB4Q9NTQ9 266 aa11.09□□□□□ -0.63
CLN6-209ENST00000569336 SETD4Q9NVD3 440 aa11.09□□□□□ -0.63
CLN6-209ENST00000569336 TELO2Q9Y4R8 837 aa11.09□□□□□ -0.63
CLN6-209ENST00000569336 PCDHA10Q9Y5I2 948 aa11.09□□□□□ -0.63
CLN6-209ENST00000569336 TDRD15B5MCY1 1934 aaKnown RBP11.09□□□□□ -0.63
CLN6-209ENST00000569336 TCHHQ07283 1943 aa11.09□□□□□ -0.63
CLN6-209ENST00000569336 ATG2AQ2TAZ0 1938 aa11.09□□□□□ -0.63
CLN6-209ENST00000569336 IGSF9BQ9UPX0 1349 aa11.09□□□□□ -0.63
CLN6-209ENST00000569336 POTEB3A0JP26 581 aa11.08□□□□□ -0.64
CLN6-209ENST00000569336 TREHO43280 583 aa11.08□□□□□ -0.64
CLN6-209ENST00000569336 MARCH6O60337 910 aa11.08□□□□□ -0.64
CLN6-209ENST00000569336 BAIAP3O94812 1187 aa11.08□□□□□ -0.64
CLN6-209ENST00000569336 THPOP40225 353 aa11.08□□□□□ -0.64
CLN6-209ENST00000569336 FOSBP53539 338 aa11.08□□□□□ -0.64
CLN6-209ENST00000569336 EPHB4P54760 987 aa11.08□□□□□ -0.64
CLN6-209ENST00000569336 SMAD3P84022 425 aaKnown RBP11.08□□□□□ -0.64
CLN6-209ENST00000569336 NR5A1Q13285 461 aa11.08□□□□□ -0.64
CLN6-209ENST00000569336 TMEM240Q5SV17 173 aa11.08□□□□□ -0.64
CLN6-209ENST00000569336 PDXDC2PQ6P474 469 aa11.08□□□□□ -0.64
CLN6-209ENST00000569336 POTEBQ6S5H4 581 aa11.08□□□□□ -0.64
CLN6-209ENST00000569336 ZNF365Q70YC5 407 aa11.08□□□□□ -0.64
CLN6-209ENST00000569336 CCDC60Q8IWA6 550 aaPredicted RBP11.08□□□□□ -0.64
CLN6-209ENST00000569336 CKAP2LQ8IYA6 745 aa11.08□□□□□ -0.64
CLN6-209ENST00000569336 SLFN12Q8IYM2 578 aa11.08□□□□□ -0.64
CLN6-209ENST00000569336 ETNPPLQ8TBG4 499 aa11.08□□□□□ -0.64
CLN6-209ENST00000569336 ATP8B4Q8TF62 1192 aa11.08□□□□□ -0.64
CLN6-209ENST00000569336 HERVK_113Q902F9 699 aa11.08□□□□□ -0.64
CLN6-209ENST00000569336 TNFRSF25Q93038 417 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms