RNA–Protein interactions for RNA: ENST00000569243.5

UBR1-209, Transcript of ubiquitin protein ligase E3 component n-recognin 1, human

TSL 3

Gene UBR1, Length 702 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBR1-209	ENST00000569243	RAMP2	O60895	175 aa		5.53	□□□□□ -1.52
UBR1-209	ENST00000569243	ACO1	P21399	889 aa	Known RBP	5.53	□□□□□ -1.52
UBR1-209	ENST00000569243	GRIA2	P42262	883 aa		5.53	□□□□□ -1.52
UBR1-209	ENST00000569243	MRPS21	P82921	87 aa	Known RBP	5.53	□□□□□ -1.52
UBR1-209	ENST00000569243	TUBA3C	Q13748	450 aa		5.53	□□□□□ -1.52
UBR1-209	ENST00000569243	DDR2	Q16832	855 aa		5.53	□□□□□ -1.52
UBR1-209	ENST00000569243	TUBA3E	Q6PEY2	450 aa		5.53	□□□□□ -1.52
UBR1-209	ENST00000569243	RALYL	Q86SE5	291 aa	Known RBP	5.53	□□□□□ -1.52
UBR1-209	ENST00000569243	IER2	Q9BTL4	223 aa		5.53	□□□□□ -1.52
UBR1-209	ENST00000569243	KLF4	O43474	513 aa		5.52	□□□□□ -1.53
UBR1-209	ENST00000569243	MAK	P20794	623 aa		5.52	□□□□□ -1.53
UBR1-209	ENST00000569243	ZC3H6	P61129	1189 aa	Known RBP	5.52	□□□□□ -1.53
UBR1-209	ENST00000569243	SPIRE1	Q08AE8	756 aa		5.52	□□□□□ -1.53
UBR1-209	ENST00000569243	KIZ	Q2M2Z5	673 aa		5.52	□□□□□ -1.53
UBR1-209	ENST00000569243	HABP4	Q5JVS0	413 aa	Known RBP	5.52	□□□□□ -1.53
UBR1-209	ENST00000569243	LBX2	Q6XYB7	198 aa		5.52	□□□□□ -1.53
UBR1-209	ENST00000569243	OTOP3	Q7RTS5	596 aa		5.52	□□□□□ -1.53
UBR1-209	ENST00000569243	FUK	Q8N0W3	1084 aa		5.52	□□□□□ -1.53
UBR1-209	ENST00000569243	ZNF483	Q8TF39	744 aa	Predicted RBP	5.52	□□□□□ -1.53
UBR1-209	ENST00000569243	ERBB2	P04626	1255 aa		5.51	□□□□□ -1.53
UBR1-209	ENST00000569243	FBL	P22087	321 aa	Known RBP	5.51	□□□□□ -1.53
UBR1-209	ENST00000569243	EPHA5	P54756	1037 aa		5.51	□□□□□ -1.53
UBR1-209	ENST00000569243		Q6ZSN1	163 aa		5.51	□□□□□ -1.53
UBR1-209	ENST00000569243	ANKS3	Q6ZW76	656 aa		5.51	□□□□□ -1.53
UBR1-209	ENST00000569243	PROSER1	Q86XN7	944 aa		5.51	□□□□□ -1.53
UBR1-209	ENST00000569243	DTX3	Q8N9I9	347 aa		5.51	□□□□□ -1.53
UBR1-209	ENST00000569243	NUDT10	Q8NFP7	164 aa		5.51	□□□□□ -1.53
UBR1-209	ENST00000569243	UHMK1	Q8TAS1	419 aa	Known RBP	5.51	□□□□□ -1.53
UBR1-209	ENST00000569243	PUM2	Q8TB72	1066 aa	Known RBP eCLIP	5.51	□□□□□ -1.53
UBR1-209	ENST00000569243	NUDT11	Q96G61	164 aa		5.51	□□□□□ -1.53
UBR1-209	ENST00000569243	AARSD1	Q9BTE6	412 aa	Known RBP	5.51	□□□□□ -1.53
UBR1-209	ENST00000569243	PHF20	Q9BVI0	1012 aa		5.51	□□□□□ -1.53
UBR1-209	ENST00000569243	WASF3	Q9UPY6	502 aa		5.51	□□□□□ -1.53
UBR1-209	ENST00000569243	SLC4A7	Q9Y6M7	1214 aa		5.51	□□□□□ -1.53
UBR1-209	ENST00000569243	COL6A1	P12109	1028 aa		5.5	□□□□□ -1.53
UBR1-209	ENST00000569243	VASN	Q6EMK4	673 aa		5.5	□□□□□ -1.53
UBR1-209	ENST00000569243	STYK1	Q6J9G0	422 aa		5.5	□□□□□ -1.53
UBR1-209	ENST00000569243	LRRC47	Q8N1G4	583 aa	Known RBP	5.5	□□□□□ -1.53
UBR1-209	ENST00000569243	PIP4K2C	Q8TBX8	421 aa		5.5	□□□□□ -1.53
UBR1-209	ENST00000569243	CLEC4D	Q8WXI8	215 aa		5.5	□□□□□ -1.53
UBR1-209	ENST00000569243	JAM3	Q9BX67	310 aa		5.5	□□□□□ -1.53
UBR1-209	ENST00000569243	CCDC9	Q9Y3X0	531 aa	Known RBP	5.5	□□□□□ -1.53
UBR1-209	ENST00000569243	MSC	O60682	206 aa		5.49	□□□□□ -1.53
UBR1-209	ENST00000569243	KLHL18	O94889	574 aa		5.49	□□□□□ -1.53
UBR1-209	ENST00000569243	ENO2	P09104	434 aa	Predicted RBP	5.49	□□□□□ -1.53
UBR1-209	ENST00000569243	PABPC1	P11940	636 aa	Known RBP	5.49	□□□□□ -1.53
UBR1-209	ENST00000569243	FAH	P16930	419 aa		5.49	□□□□□ -1.53
UBR1-209	ENST00000569243	GPR85	P60893	370 aa		5.49	□□□□□ -1.53
UBR1-209	ENST00000569243	COL10A1	Q03692	680 aa		5.49	□□□□□ -1.53
UBR1-209	ENST00000569243	SMAD2	Q15796	467 aa	Known RBP	5.49	□□□□□ -1.53
UBR1-209	ENST00000569243	NSMF	Q6X4W1	530 aa		5.49	□□□□□ -1.53
UBR1-209	ENST00000569243	USP53	Q70EK8	1073 aa		5.49	□□□□□ -1.53
UBR1-209	ENST00000569243	IFNL3	Q8IZI9	196 aa		5.49	□□□□□ -1.53
UBR1-209	ENST00000569243	CELF2-AS1	Q8N7Q2	184 aa		5.49	□□□□□ -1.53
UBR1-209	ENST00000569243	HNRNPLL	Q8WVV9	542 aa	Known RBP	5.49	□□□□□ -1.53
UBR1-209	ENST00000569243	OSBP2	Q969R2	916 aa		5.49	□□□□□ -1.53
UBR1-209	ENST00000569243	CLIP3	Q96DZ5	547 aa		5.49	□□□□□ -1.53
UBR1-209	ENST00000569243	TTPAL	Q9BTX7	342 aa		5.49	□□□□□ -1.53
UBR1-209	ENST00000569243	ARHGEF4	Q9NR80	690 aa		5.49	□□□□□ -1.53
UBR1-209	ENST00000569243	SLC27A2	O14975	620 aa		5.48	□□□□□ -1.53
UBR1-209	ENST00000569243	KNG1	P01042	644 aa		5.48	□□□□□ -1.53
UBR1-209	ENST00000569243	GRK2	P25098	689 aa		5.48	□□□□□ -1.53
UBR1-209	ENST00000569243	DNAJA1	P31689	397 aa	Known RBP	5.48	□□□□□ -1.53
UBR1-209	ENST00000569243	GRK3	P35626	688 aa		5.48	□□□□□ -1.53
UBR1-209	ENST00000569243	RGS19	P49795	217 aa		5.48	□□□□□ -1.53
UBR1-209	ENST00000569243	TUSC3	Q13454	348 aa		5.48	□□□□□ -1.53
UBR1-209	ENST00000569243	RAB33A	Q14088	237 aa		5.48	□□□□□ -1.53
UBR1-209	ENST00000569243	PAN2	Q504Q3	1202 aa	Known RBP	5.48	□□□□□ -1.53
UBR1-209	ENST00000569243	ZKSCAN2	Q63HK3	967 aa		5.48	□□□□□ -1.53
UBR1-209	ENST00000569243	TMC5	Q6UXY8	1006 aa		5.48	□□□□□ -1.53
UBR1-209	ENST00000569243		Q6ZUG5	572 aa		5.48	□□□□□ -1.53
UBR1-209	ENST00000569243	GPR155	Q7Z3F1	870 aa		5.48	□□□□□ -1.53
UBR1-209	ENST00000569243	PNPLA5	Q7Z6Z6	429 aa	Predicted RBP	5.48	□□□□□ -1.53
UBR1-209	ENST00000569243	REXO1L1P	Q8IX06	675 aa		5.48	□□□□□ -1.53
UBR1-209	ENST00000569243	AJUBA	Q96IF1	538 aa		5.48	□□□□□ -1.53
UBR1-209	ENST00000569243	DSE	Q9UL01	958 aa		5.48	□□□□□ -1.53
UBR1-209	ENST00000569243	TRAV20	A0A0B4J274	112 aa		5.47	□□□□□ -1.53
UBR1-209	ENST00000569243	FAM47E-STBD1	D6RA91	191 aa		5.47	□□□□□ -1.53
UBR1-209	ENST00000569243	WNT9A	O14904	365 aa		5.47	□□□□□ -1.53
UBR1-209	ENST00000569243	PRODH	O43272	600 aa		5.47	□□□□□ -1.53
UBR1-209	ENST00000569243	GNAT1	P11488	350 aa		5.47	□□□□□ -1.53
UBR1-209	ENST00000569243	ITGB6	P18564	788 aa		5.47	□□□□□ -1.53
UBR1-209	ENST00000569243	KRT4	P19013	534 aa		5.47	□□□□□ -1.53
UBR1-209	ENST00000569243	KRTAP5-11	Q6L8G4	156 aa		5.47	□□□□□ -1.53
UBR1-209	ENST00000569243	ST7	Q9NRC1	585 aa		5.47	□□□□□ -1.53
UBR1-209	ENST00000569243	REXO2	Q9Y3B8	237 aa	Known RBP	5.47	□□□□□ -1.53
UBR1-209	ENST00000569243	FBXO21	O94952	628 aa		5.46	□□□□□ -1.54
UBR1-209	ENST00000569243	SOD2	P04179	222 aa		5.46	□□□□□ -1.54
UBR1-209	ENST00000569243	CKM	P06732	381 aa		5.46	□□□□□ -1.54
UBR1-209	ENST00000569243	KRTAP10-7	P60409	375 aa	Predicted RBP	5.46	□□□□□ -1.54
UBR1-209	ENST00000569243	IFRD2	Q12894	506 aa	Predicted RBP	5.46	□□□□□ -1.54
UBR1-209	ENST00000569243	NTRK3	Q16288	839 aa		5.46	□□□□□ -1.54
UBR1-209	ENST00000569243	CD276	Q5ZPR3	534 aa		5.46	□□□□□ -1.54
UBR1-209	ENST00000569243	KCTD1	Q719H9	257 aa		5.46	□□□□□ -1.54
UBR1-209	ENST00000569243	IFNL2	Q8IZJ0	200 aa		5.46	□□□□□ -1.54
UBR1-209	ENST00000569243	NEIL1	Q96FI4	390 aa	Predicted RBP	5.46	□□□□□ -1.54
UBR1-209	ENST00000569243	PRRX2	Q99811	253 aa		5.46	□□□□□ -1.54
UBR1-209	ENST00000569243	ALG1	Q9BT22	464 aa		5.46	□□□□□ -1.54
UBR1-209	ENST00000569243	KATNBL1	Q9H079	304 aa		5.46	□□□□□ -1.54
UBR1-209	ENST00000569243	KCND1	Q9NSA2	647 aa		5.46	□□□□□ -1.54

Retrieved 100 of 20,778 RNA–protein pairs in 71.2 ms