RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-223ENST00000566472 WDR11Q9BZH6 1224 aa6.89□□□□□ -1.31
CLN3-223ENST00000566472 LACRTQ9GZZ8 138 aa6.89□□□□□ -1.31
CLN3-223ENST00000566472 GANQ9H2C0 597 aa6.89□□□□□ -1.31
CLN3-223ENST00000566472 VCPKMTQ9H867 229 aa6.89□□□□□ -1.31
CLN3-223ENST00000566472 PRDM10Q9NQV6 1147 aa6.89□□□□□ -1.31
CLN3-223ENST00000566472 AIPL1Q9NZN9 384 aa6.89□□□□□ -1.31
CLN3-223ENST00000566472 ZNF70Q9UC06 446 aaPredicted RBP6.89□□□□□ -1.31
CLN3-223ENST00000566472 TRIM10Q9UDY6 481 aa6.89□□□□□ -1.31
CLN3-223ENST00000566472 FEM1BQ9UK73 627 aa6.89□□□□□ -1.31
CLN3-223ENST00000566472 SNX12Q9UMY4 172 aa6.89□□□□□ -1.31
CLN3-223ENST00000566472 L1RE1Q9UN81 338 aa6.89□□□□□ -1.31
CLN3-223ENST00000566472 BZW2Q9Y6E2 419 aaKnown RBP6.89□□□□□ -1.31
CLN3-223ENST00000566472 FRMPD4Q14CM0 1322 aa6.89□□□□□ -1.31
CLN3-223ENST00000566472 SLX4Q8IY92 1834 aa6.89□□□□□ -1.31
CLN3-223ENST00000566472 SCN9AQ15858 1988 aa6.88□□□□□ -1.31
CLN3-223ENST00000566472 CNTNAP1P78357 1384 aa6.88□□□□□ -1.31
CLN3-223ENST00000566472 NKRFO15226 690 aaKnown RBP eCLIP6.88□□□□□ -1.31
CLN3-223ENST00000566472 PSMD10O75832 226 aa6.88□□□□□ -1.31
CLN3-223ENST00000566472 NOL4O94818 638 aa6.88□□□□□ -1.31
CLN3-223ENST00000566472 CLSTN1O94985 981 aa6.88□□□□□ -1.31
CLN3-223ENST00000566472 AFPP02771 609 aaKnown RBP6.88□□□□□ -1.31
CLN3-223ENST00000566472 SLURP2P0DP57 97 aa6.88□□□□□ -1.31
CLN3-223ENST00000566472 EPB41P11171 864 aaKnown RBP6.88□□□□□ -1.31
CLN3-223ENST00000566472 BCRP11274 1271 aa6.88□□□□□ -1.31
CLN3-223ENST00000566472 NR2F2P24468 414 aa6.88□□□□□ -1.31
CLN3-223ENST00000566472 RXRBP28702 533 aa6.88□□□□□ -1.31
CLN3-223ENST00000566472 OAS2P29728 719 aaKnown RBP6.88□□□□□ -1.31
CLN3-223ENST00000566472 PRKCIP41743 596 aa6.88□□□□□ -1.31
CLN3-223ENST00000566472 EPS15P42566 896 aa6.88□□□□□ -1.31
CLN3-223ENST00000566472 JAG1P78504 1218 aa6.88□□□□□ -1.31
CLN3-223ENST00000566472 MAP3K10Q02779 954 aa6.88□□□□□ -1.31
CLN3-223ENST00000566472 PABPC4Q13310 644 aaKnown RBP eCLIP6.88□□□□□ -1.31
CLN3-223ENST00000566472 ALCAMQ13740 583 aa6.88□□□□□ -1.31
CLN3-223ENST00000566472 MYBPC2Q14324 1141 aa6.88□□□□□ -1.31
CLN3-223ENST00000566472 RRP1BQ14684 758 aaKnown RBP6.88□□□□□ -1.31
CLN3-223ENST00000566472 EPHA7Q15375 998 aa6.88□□□□□ -1.31
CLN3-223ENST00000566472 ASIC2Q16515 512 aa6.88□□□□□ -1.31
CLN3-223ENST00000566472 SHROOM1Q2M3G4 852 aaPredicted RBP6.88□□□□□ -1.31
CLN3-223ENST00000566472 USH1GQ495M9 461 aa6.88□□□□□ -1.31
CLN3-223ENST00000566472 TDRD12Q587J7 1177 aaKnown RBP6.88□□□□□ -1.31
CLN3-223ENST00000566472 NIPA1Q7RTP0 329 aa6.88□□□□□ -1.31
CLN3-223ENST00000566472 SFR1Q86XK3 245 aa6.88□□□□□ -1.31
CLN3-223ENST00000566472 NELFCDQ8IXH7 590 aa6.88□□□□□ -1.31
CLN3-223ENST00000566472 OGFOD1Q8N543 542 aa6.88□□□□□ -1.31
CLN3-223ENST00000566472 TTLL6Q8N841 843 aa6.88□□□□□ -1.31
CLN3-223ENST00000566472 GOLGA5Q8TBA6 731 aa6.88□□□□□ -1.31
CLN3-223ENST00000566472 CAGE1Q8TC20 777 aa6.88□□□□□ -1.31
CLN3-223ENST00000566472 SMCR8Q8TEV9 937 aaPredicted RBP6.88□□□□□ -1.31
CLN3-223ENST00000566472 NOX5Q96PH1 765 aa6.88□□□□□ -1.31
CLN3-223ENST00000566472 PNKPQ96T60 521 aa6.88□□□□□ -1.31
CLN3-223ENST00000566472 HSD17B14Q9BPX1 270 aa6.88□□□□□ -1.31
CLN3-223ENST00000566472 TEKT3Q9BXF9 490 aa6.88□□□□□ -1.31
CLN3-223ENST00000566472 FGFBP2Q9BYJ0 223 aa6.88□□□□□ -1.31
CLN3-223ENST00000566472 ZMYND15Q9H091 742 aa6.88□□□□□ -1.31
CLN3-223ENST00000566472 EPC1Q9H2F5 836 aa6.88□□□□□ -1.31
CLN3-223ENST00000566472 ZSWIM4Q9H7M6 989 aa6.88□□□□□ -1.31
CLN3-223ENST00000566472 PSD3Q9NYI0 1048 aa6.88□□□□□ -1.31
CLN3-223ENST00000566472 MAP3K20Q9NYL2 800 aaKnown RBP6.88□□□□□ -1.31
CLN3-223ENST00000566472 ARMCX3Q9UH62 379 aaPredicted RBP6.88□□□□□ -1.31
CLN3-223ENST00000566472 PRDM4Q9UKN5 801 aa6.88□□□□□ -1.31
CLN3-223ENST00000566472 ODF2LQ9ULJ1 636 aa6.88□□□□□ -1.31
CLN3-223ENST00000566472 ASTN1O14525 1302 aa6.87□□□□□ -1.31
CLN3-223ENST00000566472 RPTORQ8N122 1335 aa6.87□□□□□ -1.31
CLN3-223ENST00000566472 NPHP3-ACAD11A0A0J9YXS1 232 aa6.87□□□□□ -1.31
CLN3-223ENST00000566472 MACROD2A1Z1Q3 448 aa6.87□□□□□ -1.31
CLN3-223ENST00000566472 GRID2IPA4D2P6 1211 aa6.87□□□□□ -1.31
CLN3-223ENST00000566472 TCP10L2B9ZVM9 353 aa6.87□□□□□ -1.31
CLN3-223ENST00000566472 CES2O00748 559 aa6.87□□□□□ -1.31
CLN3-223ENST00000566472 PPP1R12BO60237 982 aaPredicted RBP6.87□□□□□ -1.31
CLN3-223ENST00000566472 FAM13AO94988 1023 aa6.87□□□□□ -1.31
CLN3-223ENST00000566472 NR3C1P04150 777 aa6.87□□□□□ -1.31
CLN3-223ENST00000566472 PLEKP08567 350 aaPredicted RBP6.87□□□□□ -1.31
CLN3-223ENST00000566472 RHOXF2BP0C7M4 288 aa6.87□□□□□ -1.31
CLN3-223ENST00000566472 MAPTP10636 758 aaKnown RBP6.87□□□□□ -1.31
CLN3-223ENST00000566472 XRCC5P13010 732 aaKnown RBP6.87□□□□□ -1.31
CLN3-223ENST00000566472 GUCY2CP25092 1073 aa6.87□□□□□ -1.31
CLN3-223ENST00000566472 TNFRSF8P28908 595 aa6.87□□□□□ -1.31
CLN3-223ENST00000566472 CAP2P40123 477 aa6.87□□□□□ -1.31
CLN3-223ENST00000566472 ZNF131P52739 623 aa6.87□□□□□ -1.31
CLN3-223ENST00000566472 POLR2FP61218 127 aaKnown RBP6.87□□□□□ -1.31
CLN3-223ENST00000566472 VSNL1P62760 191 aa6.87□□□□□ -1.31
CLN3-223ENST00000566472 CYP27A1Q02318 531 aa6.87□□□□□ -1.31
CLN3-223ENST00000566472 KLHL30Q0D2K2 578 aa6.87□□□□□ -1.31
CLN3-223ENST00000566472 KCNH2Q12809 1159 aa6.87□□□□□ -1.31
CLN3-223ENST00000566472 NAB2Q15742 525 aa6.87□□□□□ -1.31
CLN3-223ENST00000566472 SLC18A3Q16572 532 aa6.87□□□□□ -1.31
CLN3-223ENST00000566472 IFI16Q16666 785 aaKnown RBP6.87□□□□□ -1.31
CLN3-223ENST00000566472 CEP55Q53EZ4 464 aa6.87□□□□□ -1.31
CLN3-223ENST00000566472 GLE1Q53GS7 698 aaKnown RBP6.87□□□□□ -1.31
CLN3-223ENST00000566472 LRCH2Q5VUJ6 765 aa6.87□□□□□ -1.31
CLN3-223ENST00000566472 RINT1Q6NUQ1 792 aa6.87□□□□□ -1.31
CLN3-223ENST00000566472 B3GNT9Q6UX72 402 aa6.87□□□□□ -1.31
CLN3-223ENST00000566472 GBP6Q6ZN66 633 aa6.87□□□□□ -1.31
CLN3-223ENST00000566472 ZNF771Q7L3S4 317 aaPredicted RBP6.87□□□□□ -1.31
CLN3-223ENST00000566472 OTOP1Q7RTM1 612 aa6.87□□□□□ -1.31
CLN3-223ENST00000566472 NOA1Q8NC60 698 aaKnown RBP6.87□□□□□ -1.31
CLN3-223ENST00000566472 TMEM174Q8WUU8 243 aa6.87□□□□□ -1.31
CLN3-223ENST00000566472 GJA10Q969M2 543 aa6.87□□□□□ -1.31
CLN3-223ENST00000566472 VTI1AQ96AJ9 217 aa6.87□□□□□ -1.31
CLN3-223ENST00000566472 EEF2KMTQ96G04 330 aa6.87□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 66.4 ms