RNA–Protein interactions for RNA: ENST00000564387.5

USB1-209, Transcript of U6 snRNA biogenesis phosphodiesterase 1, humanhuman

TSL 4

Gene USB1, Length 558 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USB1-209ENST00000564387 CAGE1Q8TC20 777 aa19.56■□□□□ 0.72
USB1-209ENST00000564387 VWCEQ96DN2 955 aa19.56■□□□□ 0.72
USB1-209ENST00000564387 INTS4Q96HW7 963 aaKnown RBP19.56■□□□□ 0.72
USB1-209ENST00000564387 TEKT3Q9BXF9 490 aa19.56■□□□□ 0.72
USB1-209ENST00000564387 TRIP12Q14669 1992 aaPredicted RBP19.55■□□□□ 0.72
USB1-209ENST00000564387 MBLAC1A4D2B0 266 aaPredicted RBP19.55■□□□□ 0.72
USB1-209ENST00000564387 WDR64B1ANS9 1081 aa19.55■□□□□ 0.72
USB1-209ENST00000564387 KIF28PB7ZC32 967 aa19.55■□□□□ 0.72
USB1-209ENST00000564387 GNAT1P11488 350 aa19.55■□□□□ 0.72
USB1-209ENST00000564387 ATP4AP20648 1035 aa19.55■□□□□ 0.72
USB1-209ENST00000564387 EPHB4P54760 987 aa19.55■□□□□ 0.72
USB1-209ENST00000564387 FPGSQ05932 587 aa19.55■□□□□ 0.72
USB1-209ENST00000564387 PPP2R5CQ13362 524 aa19.55■□□□□ 0.72
USB1-209ENST00000564387 BFSP2Q13515 415 aa19.55■□□□□ 0.72
USB1-209ENST00000564387 PLCB4Q15147 1175 aa19.55■□□□□ 0.72
USB1-209ENST00000564387 FAM160B1Q5W0V3 765 aa19.55■□□□□ 0.72
USB1-209ENST00000564387 TMEM199Q8N511 208 aa19.55■□□□□ 0.72
USB1-209ENST00000564387 LMBR1Q8WVP7 490 aa19.55■□□□□ 0.72
USB1-209ENST00000564387 GJA10Q969M2 543 aa19.55■□□□□ 0.72
USB1-209ENST00000564387 PPP1R12CQ9BZL4 782 aa19.55■□□□□ 0.72
USB1-209ENST00000564387 UBE2OQ9C0C9 1292 aaKnown RBP19.55■□□□□ 0.72
USB1-209ENST00000564387 UNC45AQ9H3U1 944 aa19.55■□□□□ 0.72
USB1-209ENST00000564387 DISC1Q9NRI5 854 aa19.55■□□□□ 0.72
USB1-209ENST00000564387 SETD4Q9NVD3 440 aa19.55■□□□□ 0.72
USB1-209ENST00000564387 VAV3Q9UKW4 847 aa19.55■□□□□ 0.72
USB1-209ENST00000564387 SMC3Q9UQE7 1217 aa19.55■□□□□ 0.72
USB1-209ENST00000564387 K7ELQ4 463 aaPredicted RBP19.54■□□□□ 0.72
USB1-209ENST00000564387 TREHO43280 583 aa19.54■□□□□ 0.72
USB1-209ENST00000564387 PSAPP07602 524 aa19.54■□□□□ 0.72
USB1-209ENST00000564387 TRAPPC10P48553 1259 aa19.54■□□□□ 0.72
USB1-209ENST00000564387 JAK3P52333 1124 aa19.54■□□□□ 0.72
USB1-209ENST00000564387 ORC2Q13416 577 aaPredicted RBP19.54■□□□□ 0.72
USB1-209ENST00000564387 HABP4Q5JVS0 413 aaKnown RBP19.54■□□□□ 0.72
USB1-209ENST00000564387 MARCH8Q5T0T0 291 aa19.54■□□□□ 0.72
USB1-209ENST00000564387 SWSAP1Q6NVH7 229 aa19.54■□□□□ 0.72
USB1-209ENST00000564387 C16orf59Q7L2K0 433 aa19.54■□□□□ 0.72
USB1-209ENST00000564387 RPAINQ86UA6 219 aa19.54■□□□□ 0.72
USB1-209ENST00000564387 TDHQ8IZJ6 230 aa19.54■□□□□ 0.72
USB1-209ENST00000564387 TNPO1Q92973 898 aaKnown RBP19.54■□□□□ 0.72
USB1-209ENST00000564387 ATP6V0A1Q93050 837 aa19.54■□□□□ 0.72
USB1-209ENST00000564387 WNT8BQ93098 351 aa19.54■□□□□ 0.72
USB1-209ENST00000564387 MTMR9Q96QG7 549 aa19.54■□□□□ 0.72
USB1-209ENST00000564387 ZNF302Q9NR11 478 aa19.54■□□□□ 0.72
USB1-209ENST00000564387 NOD1Q9Y239 953 aa19.54■□□□□ 0.72
USB1-209ENST00000564387 WDR81Q562E7 1941 aa19.54■□□□□ 0.72
USB1-209ENST00000564387 IGSF9BQ9UPX0 1349 aa19.53■□□□□ 0.72
USB1-209ENST00000564387 IQCF3P0C7M6 154 aa19.53■□□□□ 0.72
USB1-209ENST00000564387 INSRRP14616 1297 aa19.53■□□□□ 0.72
USB1-209ENST00000564387 CSF2RAP15509 400 aa19.53■□□□□ 0.72
USB1-209ENST00000564387 MARK3P27448 753 aa19.53■□□□□ 0.72
USB1-209ENST00000564387 SPIRE1Q08AE8 756 aa19.53■□□□□ 0.72
USB1-209ENST00000564387 PPIGQ13427 754 aaKnown RBP eCLIP19.53■□□□□ 0.721e-8■□□□□ 8.5
USB1-209ENST00000564387 TRAF7Q6Q0C0 670 aa19.53■□□□□ 0.72
USB1-209ENST00000564387 POTEDQ86YR6 584 aa19.53■□□□□ 0.72
USB1-209ENST00000564387 CCDC155Q8N6L0 562 aa19.53■□□□□ 0.72
USB1-209ENST00000564387 ATP8B4Q8TF62 1192 aa19.53■□□□□ 0.72
USB1-209ENST00000564387 TCEAL9Q9UHQ7 104 aa19.53■□□□□ 0.72
USB1-209ENST00000564387 TANC1Q9C0D5 1861 aa19.52■□□□□ 0.72
USB1-209ENST00000564387 LAMA3Q16787 3333 aa19.52■□□□□ 0.72
USB1-209ENST00000564387 POTEB3A0JP26 581 aa19.52■□□□□ 0.72
USB1-209ENST00000564387 RRN3P2A6NIE6 340 aa19.52■□□□□ 0.72
USB1-209ENST00000564387 HBP1O60381 514 aa19.52■□□□□ 0.72
USB1-209ENST00000564387 CAND2O75155 1236 aa19.52■□□□□ 0.72
USB1-209ENST00000564387 CKBP12277 381 aa19.52■□□□□ 0.72
USB1-209ENST00000564387 RFC2P35250 354 aa19.52■□□□□ 0.72
USB1-209ENST00000564387 PPFIA1Q13136 1202 aa19.52■□□□□ 0.72
USB1-209ENST00000564387 GPNMBQ14956 572 aa19.52■□□□□ 0.72
USB1-209ENST00000564387 GRIK4Q16099 956 aa19.52■□□□□ 0.72
USB1-209ENST00000564387 PDXDC2PQ6P474 469 aa19.52■□□□□ 0.72
USB1-209ENST00000564387 POTEBQ6S5H4 581 aa19.52■□□□□ 0.72
USB1-209ENST00000564387 SLFN12Q8IYM2 578 aa19.52■□□□□ 0.72
USB1-209ENST00000564387 IL23AQ9NPF7 189 aa19.52■□□□□ 0.72
USB1-209ENST00000564387 TRIOBPQ9H2D6 2365 aa19.52■□□□□ 0.72
USB1-209ENST00000564387 LAMA2P24043 3122 aaKnown RBP19.51■□□□□ 0.71
USB1-209ENST00000564387 KAT6AQ92794 2004 aa19.51■□□□□ 0.71
USB1-209ENST00000564387 ZBTB42B2RXF5 422 aa19.51■□□□□ 0.71
USB1-209ENST00000564387 BACH1O14867 736 aa19.51■□□□□ 0.71
USB1-209ENST00000564387 ZNF862O60290 1169 aa19.51■□□□□ 0.71
USB1-209ENST00000564387 PARNO95453 639 aaKnown RBP19.51■□□□□ 0.71
USB1-209ENST00000564387 TOB1P50616 345 aaPredicted RBP19.51■□□□□ 0.71
USB1-209ENST00000564387 CCL23P55773 120 aa19.51■□□□□ 0.71
USB1-209ENST00000564387 LARP1BQ659C4 914 aaKnown RBP19.51■□□□□ 0.71
USB1-209ENST00000564387 BBXQ8WY36 941 aaPredicted RBP19.51■□□□□ 0.71
USB1-209ENST00000564387 GABBR1Q9UBS5 961 aa19.51■□□□□ 0.71
USB1-209ENST00000564387 MYH9P35579 1960 aaKnown RBP19.51■□□□□ 0.71
USB1-209ENST00000564387 COL1A2P08123 1366 aa19.5■□□□□ 0.71
USB1-209ENST00000564387 EML1O00423 815 aa19.5■□□□□ 0.71
USB1-209ENST00000564387 NEMFO60524 1076 aa19.5■□□□□ 0.71
USB1-209ENST00000564387 STBD1O95210 358 aa19.5■□□□□ 0.71
USB1-209ENST00000564387 BAG4O95429 457 aaKnown RBP19.5■□□□□ 0.71
USB1-209ENST00000564387 SELPP16109 830 aa19.5■□□□□ 0.71
USB1-209ENST00000564387 SHHQ15465 462 aa19.5■□□□□ 0.71
USB1-209ENST00000564387 LRIT3Q3SXY7 679 aa19.5■□□□□ 0.71
USB1-209ENST00000564387 TMEM240Q5SV17 173 aa19.5■□□□□ 0.71
USB1-209ENST00000564387 C9orf50Q5SZB4 431 aa19.5■□□□□ 0.71
USB1-209ENST00000564387 RASIP1Q5U651 963 aa19.5■□□□□ 0.71
USB1-209ENST00000564387 TAF2Q6P1X5 1199 aa19.5■□□□□ 0.71
USB1-209ENST00000564387 MIER3Q7Z3K6 550 aa19.5■□□□□ 0.71
USB1-209ENST00000564387 RETREG2Q8NC44 543 aa19.5■□□□□ 0.71
USB1-209ENST00000564387 SCLYQ96I15 445 aa19.5■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms