RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 TELO2Q9Y4R8 837 aa15.17■□□□□ 0.02
CLK3-213ENST00000563842 BACH1O14867 736 aa15.16■□□□□ 0.02
CLK3-213ENST00000563842 DHX15O43143 795 aaKnown RBP15.16■□□□□ 0.02
CLK3-213ENST00000563842 TREHO43280 583 aa15.16■□□□□ 0.02
CLK3-213ENST00000563842 PSAPP07602 524 aa15.16■□□□□ 0.02
CLK3-213ENST00000563842 GCFC2P16383 781 aaKnown RBP15.16■□□□□ 0.02
CLK3-213ENST00000563842 MARK3P27448 753 aa15.16■□□□□ 0.02
CLK3-213ENST00000563842 HMGN5P82970 282 aaKnown RBP15.16■□□□□ 0.02
CLK3-213ENST00000563842 PPFIA1Q13136 1202 aa15.16■□□□□ 0.02
CLK3-213ENST00000563842 RASIP1Q5U651 963 aa15.16■□□□□ 0.02
CLK3-213ENST00000563842 FAM109BQ6ICB4 259 aaPredicted RBP15.16■□□□□ 0.02
CLK3-213ENST00000563842 TAF2Q6P1X5 1199 aa15.16■□□□□ 0.02
CLK3-213ENST00000563842 ABHD15Q6UXT9 468 aa15.16■□□□□ 0.02
CLK3-213ENST00000563842 NEK8Q86SG6 692 aa15.16■□□□□ 0.02
CLK3-213ENST00000563842 RSPH3Q86UC2 560 aa15.16■□□□□ 0.02
CLK3-213ENST00000563842 CCDC83Q8IWF9 413 aa15.16■□□□□ 0.02
CLK3-213ENST00000563842 LMBR1Q8WVP7 490 aa15.16■□□□□ 0.02
CLK3-213ENST00000563842 LENG9Q96B70 501 aa15.16■□□□□ 0.02
CLK3-213ENST00000563842 TEKT3Q9BXF9 490 aa15.16■□□□□ 0.02
CLK3-213ENST00000563842 PCDHA10Q9Y5I2 948 aa15.16■□□□□ 0.02
CLK3-213ENST00000563842 GBF1Q92538 1859 aa15.16■□□□□ 0.02
CLK3-213ENST00000563842 LOXHD1Q8IVV2 1947 aa15.15■□□□□ 0.02
CLK3-213ENST00000563842 IGKV6D-21A0A0A0MT36 114 aa15.15■□□□□ 0.02
CLK3-213ENST00000563842 WDR64B1ANS9 1081 aa15.15■□□□□ 0.02
CLK3-213ENST00000563842 MSH4O15457 936 aa15.15■□□□□ 0.02
CLK3-213ENST00000563842 JAK2O60674 1132 aa15.15■□□□□ 0.02
CLK3-213ENST00000563842 GAS7O60861 476 aa15.15■□□□□ 0.02
CLK3-213ENST00000563842 SFNP31947 248 aa15.15■□□□□ 0.02
CLK3-213ENST00000563842 THPOP40225 353 aa15.15■□□□□ 0.02
CLK3-213ENST00000563842 MCM2P49736 904 aa15.15■□□□□ 0.02
CLK3-213ENST00000563842 ADAM17P78536 824 aa15.15■□□□□ 0.02
CLK3-213ENST00000563842 HIC1Q14526 733 aa15.15■□□□□ 0.02
CLK3-213ENST00000563842 SAFBQ15424 915 aaKnown RBP eCLIP15.15■□□□□ 0.02
CLK3-213ENST00000563842 GRIK4Q16099 956 aa15.15■□□□□ 0.02
CLK3-213ENST00000563842 INF2Q27J81 1249 aa15.15■□□□□ 0.02
CLK3-213ENST00000563842 TRIM71Q2Q1W2 868 aaKnown RBP15.15■□□□□ 0.02
CLK3-213ENST00000563842 OTOP2Q7RTS6 562 aa15.15■□□□□ 0.02
CLK3-213ENST00000563842 PCYT2Q99447 389 aa15.15■□□□□ 0.02
CLK3-213ENST00000563842 ZNF302Q9NR11 478 aa15.15■□□□□ 0.02
CLK3-213ENST00000563842 TRPC6Q9Y210 931 aa15.15■□□□□ 0.02
CLK3-213ENST00000563842 SAMM50Q9Y512 469 aa15.15■□□□□ 0.02
CLK3-213ENST00000563842 POTEB3A0JP26 581 aa15.14■□□□□ 0.01
CLK3-213ENST00000563842 ZBBXA8MT70 800 aa15.14■□□□□ 0.01
CLK3-213ENST00000563842 RSPH10B2B2RC85 870 aa15.14■□□□□ 0.01
CLK3-213ENST00000563842 HBP1O60381 514 aa15.14■□□□□ 0.01
CLK3-213ENST00000563842 BAIAP3O94812 1187 aa15.14■□□□□ 0.01
CLK3-213ENST00000563842 CCNE2O96020 404 aa15.14■□□□□ 0.01
CLK3-213ENST00000563842 MMP1P03956 469 aa15.14■□□□□ 0.01
CLK3-213ENST00000563842 RSPH10BP0C881 870 aa15.14■□□□□ 0.01
CLK3-213ENST00000563842 JAK3P52333 1124 aa15.14■□□□□ 0.01
CLK3-213ENST00000563842 LETM2Q2VYF4 491 aa15.14■□□□□ 0.01
CLK3-213ENST00000563842 ZNF618Q5T7W0 954 aa15.14■□□□□ 0.01
CLK3-213ENST00000563842 LRCH2Q5VUJ6 765 aa15.14■□□□□ 0.01
CLK3-213ENST00000563842 PPP4R3AQ6IN85 833 aa15.14■□□□□ 0.01
CLK3-213ENST00000563842 PDXDC2PQ6P474 469 aa15.14■□□□□ 0.01
CLK3-213ENST00000563842 POTEBQ6S5H4 581 aa15.14■□□□□ 0.01
CLK3-213ENST00000563842 PIK3AP1Q6ZUJ8 805 aa15.14■□□□□ 0.01
CLK3-213ENST00000563842 RPAINQ86UA6 219 aa15.14■□□□□ 0.01
CLK3-213ENST00000563842 FAM184AQ8NB25 1140 aa15.14■□□□□ 0.01
CLK3-213ENST00000563842 SLC5A5Q92911 643 aa15.14■□□□□ 0.01
CLK3-213ENST00000563842 MBOAT7Q96N66 472 aa15.14■□□□□ 0.01
CLK3-213ENST00000563842 GJB4Q9NTQ9 266 aa15.14■□□□□ 0.01
CLK3-213ENST00000563842 DDX25Q9UHL0 483 aaKnown RBP15.14■□□□□ 0.01
CLK3-213ENST00000563842 TUBE1Q9UJT0 475 aa15.14■□□□□ 0.01
CLK3-213ENST00000563842 SLC4A7Q9Y6M7 1214 aa15.14■□□□□ 0.01
CLK3-213ENST00000563842 LAMA3Q16787 3333 aa15.14■□□□□ 0.01
CLK3-213ENST00000563842 MICAL3Q7RTP6 2002 aa15.14■□□□□ 0.01
CLK3-213ENST00000563842 TMEM265A0A087WTH1 108 aa15.13■□□□□ 0.01
CLK3-213ENST00000563842 EDIL3O43854 480 aa15.13■□□□□ 0.01
CLK3-213ENST00000563842 EFCAB14O75071 495 aa15.13■□□□□ 0.01
CLK3-213ENST00000563842 TDP2O95551 362 aa15.13■□□□□ 0.01
CLK3-213ENST00000563842 CXCL10P02778 98 aa15.13■□□□□ 0.01
CLK3-213ENST00000563842 INSRRP14616 1297 aa15.13■□□□□ 0.01
CLK3-213ENST00000563842 PLCB4Q15147 1175 aa15.13■□□□□ 0.01
CLK3-213ENST00000563842 ZNF697Q5TEC3 545 aa15.13■□□□□ 0.01
CLK3-213ENST00000563842 KRT40Q6A162 431 aa15.13■□□□□ 0.01
CLK3-213ENST00000563842 SWSAP1Q6NVH7 229 aa15.13■□□□□ 0.01
CLK3-213ENST00000563842 CNKSR3Q6P9H4 555 aa15.13■□□□□ 0.01
CLK3-213ENST00000563842 CKAP2LQ8IYA6 745 aa15.13■□□□□ 0.01
CLK3-213ENST00000563842 DEFB123Q8N688 67 aa15.13■□□□□ 0.01
CLK3-213ENST00000563842 RDM1Q8NG50 284 aa15.13■□□□□ 0.01
CLK3-213ENST00000563842 ATP8B4Q8TF62 1192 aa15.13■□□□□ 0.01
CLK3-213ENST00000563842 C8orf76Q96K31 380 aa15.13■□□□□ 0.01
CLK3-213ENST00000563842 TBC1D32Q96NH3 1257 aa15.13■□□□□ 0.01
CLK3-213ENST00000563842 DISC1Q9NRI5 854 aa15.13■□□□□ 0.01
CLK3-213ENST00000563842 KIF3AQ9Y496 699 aa15.13■□□□□ 0.01
CLK3-213ENST00000563842 COL1A2P08123 1366 aa15.12■□□□□ 0.01
CLK3-213ENST00000563842 MBLAC1A4D2B0 266 aaPredicted RBP15.12■□□□□ 0.01
CLK3-213ENST00000563842 TBX3O15119 743 aa15.12■□□□□ 0.01
CLK3-213ENST00000563842 MARCH6O60337 910 aa15.12■□□□□ 0.01
CLK3-213ENST00000563842 CCNT1O60563 726 aaKnown RBP15.12■□□□□ 0.01
CLK3-213ENST00000563842 DTNBO60941 627 aa15.12■□□□□ 0.01
CLK3-213ENST00000563842 IGBP1P78318 339 aa15.12■□□□□ 0.01
CLK3-213ENST00000563842 ST3GAL1Q11201 340 aa15.12■□□□□ 0.01
CLK3-213ENST00000563842 RAB30Q15771 203 aa15.12■□□□□ 0.01
CLK3-213ENST00000563842 ZNF484Q5JVG2 852 aa15.12■□□□□ 0.01
CLK3-213ENST00000563842 CCDC60Q8IWA6 550 aaPredicted RBP15.12■□□□□ 0.01
CLK3-213ENST00000563842 DIS3L2Q8IYB7 885 aaKnown RBP15.12■□□□□ 0.01
CLK3-213ENST00000563842 PHOSPHO2Q8TCD6 241 aa15.12■□□□□ 0.01
CLK3-213ENST00000563842 OXER1Q8TDS5 423 aa15.12■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms