RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 MARK3P27448 753 aa21.76■■□□□ 1.07
VPS35-202ENST00000561713 TCF7P36402 384 aaPredicted RBP21.76■■□□□ 1.07
VPS35-202ENST00000561713 ADAM17P78536 824 aa21.76■■□□□ 1.07
VPS35-202ENST00000561713 ARHGAP4P98171 946 aa21.76■■□□□ 1.07
VPS35-202ENST00000561713 APBB2Q92870 758 aa21.76■■□□□ 1.07
VPS35-202ENST00000561713 GPRASP2Q96D09 838 aa21.76■■□□□ 1.07
VPS35-202ENST00000561713 ZNF215Q9UL58 517 aaPredicted RBP21.76■■□□□ 1.07
VPS35-202ENST00000561713 PCDHA6Q9UN73 950 aa21.76■■□□□ 1.07
VPS35-202ENST00000561713 PCDHA8Q9Y5H6 950 aa21.76■■□□□ 1.07
VPS35-202ENST00000561713 PIEZO1Q92508 2521 aa21.75■■□□□ 1.07
VPS35-202ENST00000561713 ZBTB43O43298 467 aa21.75■■□□□ 1.07
VPS35-202ENST00000561713 NAPAP54920 295 aa21.75■■□□□ 1.07
VPS35-202ENST00000561713 EXOSC10Q01780 885 aaKnown RBP21.75■■□□□ 1.07
VPS35-202ENST00000561713 ZP2Q05996 745 aa21.75■■□□□ 1.07
VPS35-202ENST00000561713 FAM26DQ5JW98 314 aa21.75■■□□□ 1.07
VPS35-202ENST00000561713 XRRA1Q6P2D8 792 aa21.75■■□□□ 1.07
VPS35-202ENST00000561713 SYNE3Q6ZMZ3 975 aa21.75■■□□□ 1.07
VPS35-202ENST00000561713 ALYREFQ86V81 257 aaKnown RBP21.75■■□□□ 1.07
VPS35-202ENST00000561713 IL17RAQ96F46 866 aa21.75■■□□□ 1.07
VPS35-202ENST00000561713 CLDND1Q9NY35 253 aa21.75■■□□□ 1.07
VPS35-202ENST00000561713 UBIAD1Q9Y5Z9 338 aa21.75■■□□□ 1.07
VPS35-202ENST00000561713 WDR81Q562E7 1941 aa21.74■■□□□ 1.07
VPS35-202ENST00000561713 DCXO43602 365 aa21.74■■□□□ 1.07
VPS35-202ENST00000561713 CHRNA1P02708 482 aa21.74■■□□□ 1.07
VPS35-202ENST00000561713 CTNNB1P35222 781 aa21.74■■□□□ 1.07
VPS35-202ENST00000561713 LTBRP36941 435 aa21.74■■□□□ 1.07
VPS35-202ENST00000561713 FUT2Q10981 343 aa21.74■■□□□ 1.07
VPS35-202ENST00000561713 MTMR1Q13613 665 aa21.74■■□□□ 1.07
VPS35-202ENST00000561713 CSPP1Q1MSJ5 1256 aa21.74■■□□□ 1.07
VPS35-202ENST00000561713 RUFY4Q6ZNE9 571 aa21.74■■□□□ 1.07
VPS35-202ENST00000561713 DHX32Q7L7V1 743 aaKnown RBP21.74■■□□□ 1.07
VPS35-202ENST00000561713 FIBCD1Q8N539 461 aa21.74■■□□□ 1.07
VPS35-202ENST00000561713 SENP7Q9BQF6 1050 aa21.74■■□□□ 1.07
VPS35-202ENST00000561713 RBM28Q9NW13 759 aaKnown RBP21.74■■□□□ 1.07
VPS35-202ENST00000561713 POTEB3A0JP26 581 aa21.73■■□□□ 1.07
VPS35-202ENST00000561713 LINC00271P0C7V0 271 aa21.73■■□□□ 1.07
VPS35-202ENST00000561713 CDC27P30260 824 aa21.73■■□□□ 1.07
VPS35-202ENST00000561713 POTEBQ6S5H4 581 aa21.73■■□□□ 1.07
VPS35-202ENST00000561713 ZBTB10Q96DT7 871 aa21.73■■□□□ 1.07
VPS35-202ENST00000561713 TMEM260Q9NX78 707 aa21.73■■□□□ 1.07
VPS35-202ENST00000561713 MYO7AQ13402 2215 aa21.73■■□□□ 1.07
VPS35-202ENST00000561713 RALGAPA2Q2PPJ7 1873 aa21.73■■□□□ 1.07
VPS35-202ENST00000561713 GSTTP1A0A1W2PQM5 241 aa21.72■■□□□ 1.07
VPS35-202ENST00000561713 C5orf67F2Z3F1 127 aa21.72■■□□□ 1.07
VPS35-202ENST00000561713 STXBP3O00186 592 aa21.72■■□□□ 1.07
VPS35-202ENST00000561713 GRM6O15303 877 aa21.72■■□□□ 1.07
VPS35-202ENST00000561713 GHRP10912 638 aa21.72■■□□□ 1.07
VPS35-202ENST00000561713 BMPR1AP36894 532 aa21.72■■□□□ 1.07
VPS35-202ENST00000561713 ADCY7P51828 1080 aa21.72■■□□□ 1.07
VPS35-202ENST00000561713 RPAINQ86UA6 219 aa21.72■■□□□ 1.07
VPS35-202ENST00000561713 CYP2W1Q8TAV3 490 aa21.72■■□□□ 1.07
VPS35-202ENST00000561713 ANO3Q9BYT9 981 aa21.72■■□□□ 1.07
VPS35-202ENST00000561713 FAM217BQ9NTX9 383 aaPredicted RBP21.72■■□□□ 1.07
VPS35-202ENST00000561713 PRKAG3Q9UGI9 489 aa21.72■■□□□ 1.07
VPS35-202ENST00000561713 FAM50BQ9Y247 325 aa21.72■■□□□ 1.07
VPS35-202ENST00000561713 V9GY48 417 aaPredicted RBP21.72■■□□□ 1.07
VPS35-202ENST00000561713 NRCAMQ92823 1304 aa21.72■■□□□ 1.07
VPS35-202ENST00000561713 KIAA1671Q9BY89 1806 aa21.71■■□□□ 1.07
VPS35-202ENST00000561713 MYH9P35579 1960 aaKnown RBP21.71■■□□□ 1.07
VPS35-202ENST00000561713 C19orf67A6NJJ6 358 aa21.71■■□□□ 1.07
VPS35-202ENST00000561713 DLX2Q07687 328 aaPredicted RBP21.71■■□□□ 1.07
VPS35-202ENST00000561713 APOBRQ0VD83 1088 aa21.71■■□□□ 1.07
VPS35-202ENST00000561713 PPFIA1Q13136 1202 aa21.71■■□□□ 1.07
VPS35-202ENST00000561713 CLUL1Q15846 466 aa21.71■■□□□ 1.07
VPS35-202ENST00000561713 ADHFE1Q8IWW8 467 aa21.71■■□□□ 1.07
VPS35-202ENST00000561713 CDHR1Q96JP9 859 aa21.71■■□□□ 1.07
VPS35-202ENST00000561713 JAKMIP1Q96N16 626 aaKnown RBP21.71■■□□□ 1.07
VPS35-202ENST00000561713 EHMT1Q9H9B1 1298 aa21.71■■□□□ 1.07
VPS35-202ENST00000561713 JADE2Q9NQC1 790 aa21.71■■□□□ 1.07
VPS35-202ENST00000561713 EVPLQ92817 2033 aa21.7■■□□□ 1.06
VPS35-202ENST00000561713 PPFIA3O75145 1194 aa21.7■■□□□ 1.06
VPS35-202ENST00000561713 RB1P06400 928 aa21.7■■□□□ 1.06
VPS35-202ENST00000561713 IGBP1P78318 339 aa21.7■■□□□ 1.06
VPS35-202ENST00000561713 FGD1P98174 961 aa21.7■■□□□ 1.06
VPS35-202ENST00000561713 HYAL1Q12794 435 aa21.7■■□□□ 1.06
VPS35-202ENST00000561713 LPIN1Q14693 890 aa21.7■■□□□ 1.06
VPS35-202ENST00000561713 CTC1Q2NKJ3 1217 aa21.7■■□□□ 1.06
VPS35-202ENST00000561713 PPP1R18Q6NYC8 613 aa21.7■■□□□ 1.06
VPS35-202ENST00000561713 GIMAP8Q8ND71 665 aaPredicted RBP21.7■■□□□ 1.06
VPS35-202ENST00000561713 GLG1Q92896 1179 aa21.7■■□□□ 1.06
VPS35-202ENST00000561713 C11orf84Q9BUA3 381 aaPredicted RBP21.7■■□□□ 1.06
VPS35-202ENST00000561713 RC3H2Q9HBD1 1191 aaKnown RBP21.7■■□□□ 1.06
VPS35-202ENST00000561713 JPH1Q9HDC5 661 aaPredicted RBP21.7■■□□□ 1.06
VPS35-202ENST00000561713 RIC8AQ9NPQ8 531 aa21.7■■□□□ 1.06
VPS35-202ENST00000561713 ENPP3O14638 875 aa21.69■■□□□ 1.06
VPS35-202ENST00000561713 ADAMTS3O15072 1205 aa21.69■■□□□ 1.06
VPS35-202ENST00000561713 NCK2O43639 380 aa21.69■■□□□ 1.06
VPS35-202ENST00000561713 CSPG5O95196 566 aa21.69■■□□□ 1.06
VPS35-202ENST00000561713 IRS1P35568 1242 aa21.69■■□□□ 1.06
VPS35-202ENST00000561713 MGAT3Q09327 533 aa21.69■■□□□ 1.06
VPS35-202ENST00000561713 KRT32Q14532 448 aa21.69■■□□□ 1.06
VPS35-202ENST00000561713 GRIK4Q16099 956 aa21.69■■□□□ 1.06
VPS35-202ENST00000561713 TSGA10IPQ3SY00 556 aa21.69■■□□□ 1.06
VPS35-202ENST00000561713 PCYT2Q99447 389 aa21.69■■□□□ 1.06
VPS35-202ENST00000561713 ADGRA3Q8IWK6 1321 aa21.69■■□□□ 1.06
VPS35-202ENST00000561713 DDX39AO00148 427 aaKnown RBP21.68■■□□□ 1.06
VPS35-202ENST00000561713 ARP10275 920 aa21.68■■□□□ 1.06
VPS35-202ENST00000561713 GTF2F1P35269 517 aaKnown RBP eCLIP21.68■■□□□ 1.06
VPS35-202ENST00000561713 METAP2P50579 478 aaKnown RBP eCLIP21.68■■□□□ 1.06
VPS35-202ENST00000561713 SMAD2Q15796 467 aaKnown RBP21.68■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms