RNA–Protein interactions for RNA: ENST00000560514.1

TSPAN3-208, Transcript of tetraspanin 3, humanhuman

TSL 2

Gene TSPAN3, Length 638 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN3-208ENST00000560514 RPLP2P05387 115 aaKnown RBP20.56■□□□□ 0.88
TSPAN3-208ENST00000560514 MGAT3Q09327 533 aa20.56■□□□□ 0.88
TSPAN3-208ENST00000560514 CBX2Q14781 532 aaPredicted RBP20.56■□□□□ 0.88
TSPAN3-208ENST00000560514 PAN2Q504Q3 1202 aaKnown RBP20.56■□□□□ 0.88
TSPAN3-208ENST00000560514 FBXO47Q5MNV8 452 aa20.56■□□□□ 0.88
TSPAN3-208ENST00000560514 NLRX1Q86UT6 975 aa20.56■□□□□ 0.88
TSPAN3-208ENST00000560514 NPAS4Q8IUM7 802 aa20.56■□□□□ 0.88
TSPAN3-208ENST00000560514 DNAJB3Q8WWF6 145 aa20.56■□□□□ 0.88
TSPAN3-208ENST00000560514 SENP7Q9BQF6 1050 aa20.56■□□□□ 0.88
TSPAN3-208ENST00000560514 TLE6Q9H808 572 aa20.56■□□□□ 0.88
TSPAN3-208ENST00000560514 FAM86C1Q9NVL1 165 aa20.56■□□□□ 0.88
TSPAN3-208ENST00000560514 BARX2Q9UMQ3 279 aaPredicted RBP20.56■□□□□ 0.88
TSPAN3-208ENST00000560514 CDY2AQ9Y6F7 541 aa20.56■□□□□ 0.88
TSPAN3-208ENST00000560514 USP34Q70CQ2 3546 aa20.56■□□□□ 0.88
TSPAN3-208ENST00000560514 KIAA1671Q9BY89 1806 aa20.55■□□□□ 0.88
TSPAN3-208ENST00000560514 PALM3A6NDB9 673 aaPredicted RBP20.55■□□□□ 0.88
TSPAN3-208ENST00000560514 M0QZ92 97 aa20.55■□□□□ 0.88
TSPAN3-208ENST00000560514 DNAJB1P25685 340 aa20.55■□□□□ 0.88
TSPAN3-208ENST00000560514 TCF7P36402 384 aaPredicted RBP20.55■□□□□ 0.88
TSPAN3-208ENST00000560514 SMARCC2Q8TAQ2 1214 aa20.55■□□□□ 0.88
TSPAN3-208ENST00000560514 CUL5Q93034 780 aa20.55■□□□□ 0.88
TSPAN3-208ENST00000560514 LRFN2Q9ULH4 789 aa20.55■□□□□ 0.88
TSPAN3-208ENST00000560514 PNMA6FA0A0J9YX94 578 aa20.54■□□□□ 0.88
TSPAN3-208ENST00000560514 FSD2A1L4K1 749 aa20.54■□□□□ 0.88
TSPAN3-208ENST00000560514 MARK3P27448 753 aa20.54■□□□□ 0.88
TSPAN3-208ENST00000560514 SEMA3FQ13275 785 aa20.54■□□□□ 0.88
TSPAN3-208ENST00000560514 GRIK4Q16099 956 aa20.54■□□□□ 0.88
TSPAN3-208ENST00000560514 SPOUT1Q5T280 376 aaKnown RBP20.54■□□□□ 0.88
TSPAN3-208ENST00000560514 IER5Q5VY09 327 aa20.54■□□□□ 0.88
TSPAN3-208ENST00000560514 ZBTB33Q86T24 672 aa20.54■□□□□ 0.88
TSPAN3-208ENST00000560514 GLG1Q92896 1179 aa20.54■□□□□ 0.88
TSPAN3-208ENST00000560514 DSCC1Q9BVC3 393 aa20.54■□□□□ 0.88
TSPAN3-208ENST00000560514 RIOX1Q9H6W3 641 aa20.54■□□□□ 0.88
TSPAN3-208ENST00000560514 ERAP1Q9NZ08 941 aa20.54■□□□□ 0.88
TSPAN3-208ENST00000560514 FRMPD4Q14CM0 1322 aa20.53■□□□□ 0.88
TSPAN3-208ENST00000560514 PPFIA3O75145 1194 aa20.53■□□□□ 0.88
TSPAN3-208ENST00000560514 SRGAP2BP0DMP2 458 aa20.53■□□□□ 0.88
TSPAN3-208ENST00000560514 CD52P31358 61 aa20.53■□□□□ 0.88
TSPAN3-208ENST00000560514 MRPS6P82932 125 aaKnown RBP20.53■□□□□ 0.88
TSPAN3-208ENST00000560514 FOXK2Q01167 660 aa20.53■□□□□ 0.88
TSPAN3-208ENST00000560514 TRDNQ13061 729 aa20.53■□□□□ 0.88
TSPAN3-208ENST00000560514 PCDHB12Q9Y5F1 795 aa20.53■□□□□ 0.88
TSPAN3-208ENST00000560514 ERICH2A1L162 156 aa20.52■□□□□ 0.88
TSPAN3-208ENST00000560514 HIP1O00291 1037 aa20.52■□□□□ 0.88
TSPAN3-208ENST00000560514 ATF7P17544 494 aaPredicted RBP20.52■□□□□ 0.88
TSPAN3-208ENST00000560514 IBSPP21815 317 aaPredicted RBP20.52■□□□□ 0.88
TSPAN3-208ENST00000560514 AVPR2P30518 371 aa20.52■□□□□ 0.88
TSPAN3-208ENST00000560514 VCPP55072 806 aaKnown RBP20.52■□□□□ 0.88
TSPAN3-208ENST00000560514 IGBP1P78318 339 aa20.52■□□□□ 0.88
TSPAN3-208ENST00000560514 GRM4Q14833 912 aa20.52■□□□□ 0.88
TSPAN3-208ENST00000560514 SEC23AQ15436 765 aa20.52■□□□□ 0.88
TSPAN3-208ENST00000560514 PCNX4Q63HM2 1172 aa20.52■□□□□ 0.88
TSPAN3-208ENST00000560514 XRRA1Q6P2D8 792 aa20.52■□□□□ 0.88
TSPAN3-208ENST00000560514 SEPT1Q8WYJ6 367 aa20.52■□□□□ 0.88
TSPAN3-208ENST00000560514 TNPO1Q92973 898 aaKnown RBP20.52■□□□□ 0.88
TSPAN3-208ENST00000560514 LNPKQ9C0E8 428 aa20.52■□□□□ 0.88
TSPAN3-208ENST00000560514 FAM49AQ9H0Q0 323 aaPredicted RBP20.52■□□□□ 0.88
TSPAN3-208ENST00000560514 AGO3Q9H9G7 860 aaKnown RBP20.52■□□□□ 0.88
TSPAN3-208ENST00000560514 AAASQ9NRG9 546 aa20.52■□□□□ 0.88
TSPAN3-208ENST00000560514 TELO2Q9Y4R8 837 aa20.52■□□□□ 0.88
TSPAN3-208ENST00000560514 GLP2RO95838 553 aa20.51■□□□□ 0.87
TSPAN3-208ENST00000560514 SCG2P13521 617 aa20.51■□□□□ 0.87
TSPAN3-208ENST00000560514 PAK2Q13177 524 aa20.51■□□□□ 0.87
TSPAN3-208ENST00000560514 PIBF1Q8WXW3 757 aa20.51■□□□□ 0.87
TSPAN3-208ENST00000560514 CDHR1Q96JP9 859 aa20.51■□□□□ 0.87
TSPAN3-208ENST00000560514 NEK1Q96PY6 1258 aa20.51■□□□□ 0.87
TSPAN3-208ENST00000560514 SMARCAD1Q9H4L7 1026 aa20.51■□□□□ 0.87
TSPAN3-208ENST00000560514 SQORQ9Y6N5 450 aa20.51■□□□□ 0.87
TSPAN3-208ENST00000560514 PLXNA4Q9HCM2 1894 aa20.5■□□□□ 0.87
TSPAN3-208ENST00000560514 MBLAC1A4D2B0 266 aaPredicted RBP20.5■□□□□ 0.87
TSPAN3-208ENST00000560514 RRN3P2A6NIE6 340 aa20.5■□□□□ 0.87
TSPAN3-208ENST00000560514 UBE3AQ05086 875 aa20.5■□□□□ 0.87
TSPAN3-208ENST00000560514 PTPN21Q16825 1174 aa20.5■□□□□ 0.87
TSPAN3-208ENST00000560514 LINC01599Q8WXQ3 324 aa20.5■□□□□ 0.87
TSPAN3-208ENST00000560514 CDCA3Q99618 268 aaPredicted RBP20.5■□□□□ 0.87
TSPAN3-208ENST00000560514 RNF216Q9NWF9 866 aaPredicted RBP20.5■□□□□ 0.87
TSPAN3-208ENST00000560514 TRPV2Q9Y5S1 764 aa20.5■□□□□ 0.87
TSPAN3-208ENST00000560514 LOXHD1Q8IVV2 1947 aa20.5■□□□□ 0.87
TSPAN3-208ENST00000560514 CFAP54Q96N23 3096 aa20.5■□□□□ 0.87
TSPAN3-208ENST00000560514 PER2O15055 1255 aa20.49■□□□□ 0.87
TSPAN3-208ENST00000560514 NUBP1P53384 320 aa20.49■□□□□ 0.87
TSPAN3-208ENST00000560514 CYB5R4Q7L1T6 521 aa20.49■□□□□ 0.87
TSPAN3-208ENST00000560514 RTN4RL1Q86UN2 441 aaPredicted RBP20.49■□□□□ 0.87
TSPAN3-208ENST00000560514 ASIC4Q96FT7 647 aa20.49■□□□□ 0.87
TSPAN3-208ENST00000560514 TLR9Q9NR96 1032 aa20.49■□□□□ 0.87
TSPAN3-208ENST00000560514 PADI3Q9ULW8 664 aa20.49■□□□□ 0.87
TSPAN3-208ENST00000560514 PCDHB7Q9Y5E2 793 aa20.49■□□□□ 0.87
TSPAN3-208ENST00000560514 CACNA1HO95180 2353 aa20.48■□□□□ 0.87
TSPAN3-208ENST00000560514 H0Y858 1186 aa20.48■□□□□ 0.87
TSPAN3-208ENST00000560514 IFIT3O14879 490 aaKnown RBP20.48■□□□□ 0.87
TSPAN3-208ENST00000560514 CYTH3O43739 400 aa20.48■□□□□ 0.87
TSPAN3-208ENST00000560514 HDAC1Q13547 482 aaPredicted RBP20.48■□□□□ 0.87
TSPAN3-208ENST00000560514 GPRASP2Q96D09 838 aa20.48■□□□□ 0.87
TSPAN3-208ENST00000560514 PCDHGC5Q9Y5F6 944 aa20.48■□□□□ 0.87
TSPAN3-208ENST00000560514 ZFHX2Q9C0A1 2572 aaPredicted RBP20.47■□□□□ 0.87
TSPAN3-208ENST00000560514 PTPRZ1P23471 2315 aaPredicted RBP20.47■□□□□ 0.87
TSPAN3-208ENST00000560514 TMEM62Q0P6H9 643 aa20.47■□□□□ 0.87
TSPAN3-208ENST00000560514 AAMPQ13685 434 aa20.47■□□□□ 0.87
TSPAN3-208ENST00000560514 SART3Q15020 963 aaKnown RBP20.47■□□□□ 0.87
TSPAN3-208ENST00000560514 SLC35G1Q2M3R5 365 aa20.47■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms