RNA–Protein interactions for RNA: ENST00000560502.5

LDLR-213, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 509 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-213ENST00000560502 COL19A1Q14993 1142 aa15.99■□□□□ 0.15
LDLR-213ENST00000560502 TMEM31Q5JXX7 168 aa15.99■□□□□ 0.15
LDLR-213ENST00000560502 PCNX4Q63HM2 1172 aa15.99■□□□□ 0.15
LDLR-213ENST00000560502 XRRA1Q6P2D8 792 aa15.99■□□□□ 0.15
LDLR-213ENST00000560502 CATIPQ7Z7H3 387 aa15.99■□□□□ 0.15
LDLR-213ENST00000560502 FAM122AQ96E09 287 aa15.99■□□□□ 0.15
LDLR-213ENST00000560502 SENP7Q9BQF6 1050 aa15.99■□□□□ 0.15
LDLR-213ENST00000560502 RTEL1Q9NZ71 1219 aa15.99■□□□□ 0.15
LDLR-213ENST00000560502 ZNF215Q9UL58 517 aaPredicted RBP15.99■□□□□ 0.15
LDLR-213ENST00000560502 PI4K2BG5E9Z4 385 aa15.98■□□□□ 0.15
LDLR-213ENST00000560502 H3BNC9 293 aa15.98■□□□□ 0.15
LDLR-213ENST00000560502 MEIS2O14770 477 aa15.98■□□□□ 0.15
LDLR-213ENST00000560502 GPR37L1O60883 481 aa15.98■□□□□ 0.15
LDLR-213ENST00000560502 KCNA5P22460 613 aa15.98■□□□□ 0.15
LDLR-213ENST00000560502 SMARCA1P28370 1054 aa15.98■□□□□ 0.15
LDLR-213ENST00000560502 PDIA3P30101 505 aaKnown RBP15.98■□□□□ 0.15
LDLR-213ENST00000560502 TTC3P53804 2025 aa15.98■□□□□ 0.15
LDLR-213ENST00000560502 APOBRQ0VD83 1088 aa15.98■□□□□ 0.15
LDLR-213ENST00000560502 ST3GAL1Q11201 340 aa15.98■□□□□ 0.15
LDLR-213ENST00000560502 TIGD5Q53EQ6 642 aa15.98■□□□□ 0.15
LDLR-213ENST00000560502 USP17L6PQ6QN14 398 aa15.98■□□□□ 0.15
LDLR-213ENST00000560502 FAM178BQ8IXR5 827 aa15.98■□□□□ 0.15
LDLR-213ENST00000560502 NEK9Q8TD19 979 aa15.98■□□□□ 0.15
LDLR-213ENST00000560502 APBB2Q92870 758 aa15.98■□□□□ 0.15
LDLR-213ENST00000560502 YME1L1Q96TA2 773 aa15.98■□□□□ 0.15
LDLR-213ENST00000560502 LY9Q9HBG7 655 aa15.98■□□□□ 0.15
LDLR-213ENST00000560502 MUC6Q6W4X9 2439 aa15.98■□□□□ 0.15
LDLR-213ENST00000560502 DDAH1O94760 285 aa15.97■□□□□ 0.15
LDLR-213ENST00000560502 PTPROQ16827 1216 aa15.97■□□□□ 0.15
LDLR-213ENST00000560502 RPAINQ86UA6 219 aa15.97■□□□□ 0.15
LDLR-213ENST00000560502 ZNF654Q8IZM8 581 aa15.97■□□□□ 0.15
LDLR-213ENST00000560502 SMARCC2Q8TAQ2 1214 aa15.97■□□□□ 0.15
LDLR-213ENST00000560502 PIBF1Q8WXW3 757 aa15.97■□□□□ 0.15
LDLR-213ENST00000560502 LRRC2Q9BYS8 371 aa15.97■□□□□ 0.15
LDLR-213ENST00000560502 NRCAMQ92823 1304 aa15.96■□□□□ 0.15
LDLR-213ENST00000560502 KIAA1671Q9BY89 1806 aa15.96■□□□□ 0.15
LDLR-213ENST00000560502 PIEZO1Q92508 2521 aa15.96■□□□□ 0.15
LDLR-213ENST00000560502 KLF18A0A0U1RQI7 1052 aa15.96■□□□□ 0.15
LDLR-213ENST00000560502 DDX11L8A8MPP1 907 aa15.96■□□□□ 0.15
LDLR-213ENST00000560502 GOLGA8BA8MQT2 603 aa15.96■□□□□ 0.15
LDLR-213ENST00000560502 CDKL5O76039 1030 aa15.96■□□□□ 0.15
LDLR-213ENST00000560502 BRD1O95696 1058 aa15.96■□□□□ 0.15
LDLR-213ENST00000560502 CHRNA1P02708 482 aa15.96■□□□□ 0.15
LDLR-213ENST00000560502 LINC00271P0C7V0 271 aa15.96■□□□□ 0.15
LDLR-213ENST00000560502 IL9P15248 144 aa15.96■□□□□ 0.15
LDLR-213ENST00000560502 KCNA2P16389 499 aa15.96■□□□□ 0.15
LDLR-213ENST00000560502 GJB2P29033 226 aa15.96■□□□□ 0.15
LDLR-213ENST00000560502 ARHGAP4P98171 946 aa15.96■□□□□ 0.15
LDLR-213ENST00000560502 MGAT3Q09327 533 aa15.96■□□□□ 0.15
LDLR-213ENST00000560502 SCRN1Q12765 414 aa15.96■□□□□ 0.15
LDLR-213ENST00000560502 GPM6BQ13491 265 aa15.96■□□□□ 0.15
LDLR-213ENST00000560502 UTP14CQ5TAP6 766 aaKnown RBP15.96■□□□□ 0.15
LDLR-213ENST00000560502 CPLX2Q6PUV4 134 aaKnown RBP15.96■□□□□ 0.15
LDLR-213ENST00000560502 APOA5Q6Q788 366 aa15.96■□□□□ 0.15
LDLR-213ENST00000560502 SYNE3Q6ZMZ3 975 aa15.96■□□□□ 0.15
LDLR-213ENST00000560502 TMEM192Q8IY95 271 aa15.96■□□□□ 0.15
LDLR-213ENST00000560502 NECAB1Q8N987 351 aa15.96■□□□□ 0.15
LDLR-213ENST00000560502 BANK1Q8NDB2 785 aa15.96■□□□□ 0.15
LDLR-213ENST00000560502 GPRASP2Q96D09 838 aa15.96■□□□□ 0.15
LDLR-213ENST00000560502 RRP36Q96EU6 259 aaKnown RBP15.96■□□□□ 0.15
LDLR-213ENST00000560502 LARP6Q9BRS8 491 aaKnown RBP15.96■□□□□ 0.15
LDLR-213ENST00000560502 MYL10Q9BUA6 226 aa15.96■□□□□ 0.15
LDLR-213ENST00000560502 IFIH1Q9BYX4 1025 aaKnown RBP15.96■□□□□ 0.15
LDLR-213ENST00000560502 EHMT1Q9H9B1 1298 aa15.96■□□□□ 0.15
LDLR-213ENST00000560502 RC3H2Q9HBD1 1191 aaKnown RBP15.96■□□□□ 0.15
LDLR-213ENST00000560502 HCN4Q9Y3Q4 1203 aa15.96■□□□□ 0.15
LDLR-213ENST00000560502 GRXCR2A6NFK2 248 aa15.95■□□□□ 0.14
LDLR-213ENST00000560502 CCDC69A6NI79 296 aa15.95■□□□□ 0.14
LDLR-213ENST00000560502 ATP9AO75110 1047 aa15.95■□□□□ 0.14
LDLR-213ENST00000560502 UPP2O95045 317 aa15.95■□□□□ 0.14
LDLR-213ENST00000560502 HOXD11P31277 338 aaPredicted RBP15.95■□□□□ 0.14
LDLR-213ENST00000560502 KIF5BP33176 963 aa15.95■□□□□ 0.14
LDLR-213ENST00000560502 TCF7P36402 384 aaPredicted RBP15.95■□□□□ 0.14
LDLR-213ENST00000560502 SP4Q02446 784 aa15.95■□□□□ 0.14
LDLR-213ENST00000560502 NFKBIBQ15653 356 aa15.95■□□□□ 0.14
LDLR-213ENST00000560502 TCEAL5Q5H9L2 206 aa15.95■□□□□ 0.14
LDLR-213ENST00000560502 PTCRAQ6ISU1 281 aaPredicted RBP15.95■□□□□ 0.14
LDLR-213ENST00000560502 RUFY4Q6ZNE9 571 aa15.95■□□□□ 0.14
LDLR-213ENST00000560502 NLRX1Q86UT6 975 aa15.95■□□□□ 0.14
LDLR-213ENST00000560502 GJD3Q8N144 294 aa15.95■□□□□ 0.14
LDLR-213ENST00000560502 GIMAP8Q8ND71 665 aaPredicted RBP15.95■□□□□ 0.14
LDLR-213ENST00000560502 CTCFLQ8NI51 663 aaPredicted RBP15.95■□□□□ 0.14
LDLR-213ENST00000560502 TNPO1Q92973 898 aaKnown RBP15.95■□□□□ 0.14
LDLR-213ENST00000560502 CUL5Q93034 780 aa15.95■□□□□ 0.14
LDLR-213ENST00000560502 PABPC5Q96DU9 382 aaKnown RBP15.95■□□□□ 0.14
LDLR-213ENST00000560502 ATP6V1DQ9Y5K8 247 aa15.95■□□□□ 0.14
LDLR-213ENST00000560502 LOXHD1Q8IVV2 1947 aa15.95■□□□□ 0.14
LDLR-213ENST00000560502 CCDC196A0A1B0GTZ2 297 aa15.94■□□□□ 0.14
LDLR-213ENST00000560502 FAM86C2PA6NEL3 165 aa15.94■□□□□ 0.14
LDLR-213ENST00000560502 C5orf67F2Z3F1 127 aa15.94■□□□□ 0.14
LDLR-213ENST00000560502 ZBTB43O43298 467 aa15.94■□□□□ 0.14
LDLR-213ENST00000560502 PLEKHA8P1O95397 391 aa15.94■□□□□ 0.14
LDLR-213ENST00000560502 CALM1P0DP23 149 aa15.94■□□□□ 0.14
LDLR-213ENST00000560502 CALM2P0DP24 149 aa15.94■□□□□ 0.14
LDLR-213ENST00000560502 CALM3P0DP25 149 aa15.94■□□□□ 0.14
LDLR-213ENST00000560502 ITGB5P18084 799 aa15.94■□□□□ 0.14
LDLR-213ENST00000560502 STK3Q13188 491 aa15.94■□□□□ 0.14
LDLR-213ENST00000560502 PUS10Q3MIT2 529 aaKnown RBP15.94■□□□□ 0.14
LDLR-213ENST00000560502 TAF2Q6P1X5 1199 aa15.94■□□□□ 0.14
LDLR-213ENST00000560502 NFXL1Q6ZNB6 911 aa15.94■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms