RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 PITPNM1O00562 1244 aa14.65□□□□□ -0.06
NEDD8-208ENST00000560427 RPLP2P05387 115 aaKnown RBP14.65□□□□□ -0.06
NEDD8-208ENST00000560427 RAG1P15918 1043 aa14.65□□□□□ -0.06
NEDD8-208ENST00000560427 SYT1P21579 422 aa14.65□□□□□ -0.06
NEDD8-208ENST00000560427 MCM7P33993 719 aa14.65□□□□□ -0.06
NEDD8-208ENST00000560427 CHMP4BP1P59074 171 aa14.65□□□□□ -0.06
NEDD8-208ENST00000560427 RBL2Q08999 1139 aa14.65□□□□□ -0.06
NEDD8-208ENST00000560427 PTK7Q13308 1070 aa14.65□□□□□ -0.06
NEDD8-208ENST00000560427 GDF6Q6KF10 455 aaPredicted RBP14.65□□□□□ -0.06
NEDD8-208ENST00000560427 PDXDC2PQ6P474 469 aa14.65□□□□□ -0.06
NEDD8-208ENST00000560427 MIER3Q7Z3K6 550 aa14.65□□□□□ -0.06
NEDD8-208ENST00000560427 MTMR9Q96QG7 549 aa14.65□□□□□ -0.06
NEDD8-208ENST00000560427 LBHD1Q9BQE6 289 aaPredicted RBP14.65□□□□□ -0.06
NEDD8-208ENST00000560427 TRPV6Q9H1D0 765 aa14.65□□□□□ -0.06
NEDD8-208ENST00000560427 COL1A2P08123 1366 aa14.64□□□□□ -0.07
NEDD8-208ENST00000560427 TRIM43BA6NCK2 446 aa14.64□□□□□ -0.07
NEDD8-208ENST00000560427 RRN3P2A6NIE6 340 aa14.64□□□□□ -0.07
NEDD8-208ENST00000560427 WNT7AO00755 349 aa14.64□□□□□ -0.07
NEDD8-208ENST00000560427 CHMP2AO43633 222 aa14.64□□□□□ -0.07
NEDD8-208ENST00000560427 DKC1O60832 514 aaKnown RBP eCLIP14.64□□□□□ -0.07
NEDD8-208ENST00000560427 CAND2O75155 1236 aa14.64□□□□□ -0.07
NEDD8-208ENST00000560427 TIMP1P01033 207 aa14.64□□□□□ -0.07
NEDD8-208ENST00000560427 OR52Z1P0C646 297 aa14.64□□□□□ -0.07
NEDD8-208ENST00000560427 SYN1P17600 705 aa14.64□□□□□ -0.07
NEDD8-208ENST00000560427 ATP2B1P20020 1258 aa14.64□□□□□ -0.07
NEDD8-208ENST00000560427 PPFIA1Q13136 1202 aa14.64□□□□□ -0.07
NEDD8-208ENST00000560427 BFSP2Q13515 415 aa14.64□□□□□ -0.07
NEDD8-208ENST00000560427 BECN1Q14457 450 aa14.64□□□□□ -0.07
NEDD8-208ENST00000560427 PLCB4Q15147 1175 aa14.64□□□□□ -0.07
NEDD8-208ENST00000560427 SWSAP1Q6NVH7 229 aa14.64□□□□□ -0.07
NEDD8-208ENST00000560427 SH3RF1Q7Z6J0 888 aa14.64□□□□□ -0.07
NEDD8-208ENST00000560427 ATP8B4Q8TF62 1192 aa14.64□□□□□ -0.07
NEDD8-208ENST00000560427 LMBR1Q8WVP7 490 aa14.64□□□□□ -0.07
NEDD8-208ENST00000560427 BBXQ8WY36 941 aaPredicted RBP14.64□□□□□ -0.07
NEDD8-208ENST00000560427 TRIM43Q96BQ3 446 aaPredicted RBP14.64□□□□□ -0.07
NEDD8-208ENST00000560427 UIMC1Q96RL1 719 aa14.64□□□□□ -0.07
NEDD8-208ENST00000560427 HIPK3Q9H422 1215 aa14.64□□□□□ -0.07
NEDD8-208ENST00000560427 RNPEPQ9H4A4 650 aa14.64□□□□□ -0.07
NEDD8-208ENST00000560427 GABBR1Q9UBS5 961 aa14.64□□□□□ -0.07
NEDD8-208ENST00000560427 PCDHA12Q9UN75 941 aa14.64□□□□□ -0.07
NEDD8-208ENST00000560427 CEP131Q9UPN4 1083 aa14.64□□□□□ -0.07
NEDD8-208ENST00000560427 TRPC6Q9Y210 931 aa14.64□□□□□ -0.07
NEDD8-208ENST00000560427 LTBP2Q14767 1821 aa14.64□□□□□ -0.07
NEDD8-208ENST00000560427 TNRC18O15417 2968 aaPredicted RBP14.63□□□□□ -0.07
NEDD8-208ENST00000560427 POTEB3A0JP26 581 aa14.63□□□□□ -0.07
NEDD8-208ENST00000560427 STX6O43752 255 aa14.63□□□□□ -0.07
NEDD8-208ENST00000560427 HBP1O60381 514 aa14.63□□□□□ -0.07
NEDD8-208ENST00000560427 BMP15O95972 392 aa14.63□□□□□ -0.07
NEDD8-208ENST00000560427 MARK3P27448 753 aa14.63□□□□□ -0.07
NEDD8-208ENST00000560427 TOB1P50616 345 aaPredicted RBP14.63□□□□□ -0.07
NEDD8-208ENST00000560427 ADAM17P78536 824 aa14.63□□□□□ -0.07
NEDD8-208ENST00000560427 SPIRE1Q08AE8 756 aa14.63□□□□□ -0.07
NEDD8-208ENST00000560427 ZNF174Q15697 407 aa14.63□□□□□ -0.07
NEDD8-208ENST00000560427 GRIK4Q16099 956 aa14.63□□□□□ -0.07
NEDD8-208ENST00000560427 TAF2Q6P1X5 1199 aa14.63□□□□□ -0.07
NEDD8-208ENST00000560427 POTEBQ6S5H4 581 aa14.63□□□□□ -0.07
NEDD8-208ENST00000560427 SERINC5Q86VE9 423 aa14.63□□□□□ -0.07
NEDD8-208ENST00000560427 NEK9Q8TD19 979 aa14.63□□□□□ -0.07
NEDD8-208ENST00000560427 GJA10Q969M2 543 aa14.63□□□□□ -0.07
NEDD8-208ENST00000560427 CTAGE1Q96RT6 745 aa14.63□□□□□ -0.07
NEDD8-208ENST00000560427 GDF15Q99988 308 aa14.63□□□□□ -0.07
NEDD8-208ENST00000560427 NOC4LQ9BVI4 516 aaKnown RBP14.63□□□□□ -0.07
NEDD8-208ENST00000560427 TTC12Q9H892 705 aaPredicted RBP14.63□□□□□ -0.07
NEDD8-208ENST00000560427 EIF4ENIF1Q9NRA8 985 aaKnown RBP14.63□□□□□ -0.07
NEDD8-208ENST00000560427 MBLAC1A4D2B0 266 aaPredicted RBP14.62□□□□□ -0.07
NEDD8-208ENST00000560427 PARNO95453 639 aaKnown RBP14.62□□□□□ -0.07
NEDD8-208ENST00000560427 P4HBP07237 508 aaKnown RBP14.62□□□□□ -0.07
NEDD8-208ENST00000560427 BMP8BP34820 402 aa14.62□□□□□ -0.07
NEDD8-208ENST00000560427 PRPHP41219 470 aa14.62□□□□□ -0.07
NEDD8-208ENST00000560427 PSMC5P62195 406 aa14.62□□□□□ -0.07
NEDD8-208ENST00000560427 EPHA7Q15375 998 aa14.62□□□□□ -0.07
NEDD8-208ENST00000560427 TMEM266Q2M3C6 531 aa14.62□□□□□ -0.07
NEDD8-208ENST00000560427 ZNF484Q5JVG2 852 aa14.62□□□□□ -0.07
NEDD8-208ENST00000560427 MFSD5Q6N075 450 aa14.62□□□□□ -0.07
NEDD8-208ENST00000560427 CKAP2LQ8IYA6 745 aa14.62□□□□□ -0.07
NEDD8-208ENST00000560427 TMEM199Q8N511 208 aa14.62□□□□□ -0.07
NEDD8-208ENST00000560427 RAB34Q9BZG1 259 aa14.62□□□□□ -0.07
NEDD8-208ENST00000560427 ZSCAN16Q9H4T2 348 aaPredicted RBP14.62□□□□□ -0.07
NEDD8-208ENST00000560427 FOXD4L1Q9NU39 408 aa14.62□□□□□ -0.07
NEDD8-208ENST00000560427 SETD4Q9NVD3 440 aa14.62□□□□□ -0.07
NEDD8-208ENST00000560427 TUBE1Q9UJT0 475 aa14.62□□□□□ -0.07
NEDD8-208ENST00000560427 MTMR6Q9Y217 621 aa14.62□□□□□ -0.07
NEDD8-208ENST00000560427 OATP04181 439 aa14.61□□□□□ -0.07
NEDD8-208ENST00000560427 CYP2C9P11712 490 aa14.61□□□□□ -0.07
NEDD8-208ENST00000560427 INSRRP14616 1297 aa14.61□□□□□ -0.07
NEDD8-208ENST00000560427 RFC2P35250 354 aa14.61□□□□□ -0.07
NEDD8-208ENST00000560427 TXKP42681 527 aa14.61□□□□□ -0.07
NEDD8-208ENST00000560427 MAGEA10P43363 369 aaPredicted RBP14.61□□□□□ -0.07
NEDD8-208ENST00000560427 QARSP47897 775 aaKnown RBP14.61□□□□□ -0.07
NEDD8-208ENST00000560427 PRKCEQ02156 737 aa14.61□□□□□ -0.07
NEDD8-208ENST00000560427 FPGSQ05932 587 aa14.61□□□□□ -0.07
NEDD8-208ENST00000560427 PPIGQ13427 754 aaKnown RBP eCLIP14.61□□□□□ -0.07
NEDD8-208ENST00000560427 RPAINQ86UA6 219 aa14.61□□□□□ -0.07
NEDD8-208ENST00000560427 RETREG2Q8NC44 543 aa14.61□□□□□ -0.07
NEDD8-208ENST00000560427 PPP1R12CQ9BZL4 782 aa14.61□□□□□ -0.07
NEDD8-208ENST00000560427 TMEM60Q9H2L4 133 aa14.61□□□□□ -0.07
NEDD8-208ENST00000560427 NRBP2Q9NSY0 501 aa14.61□□□□□ -0.07
NEDD8-208ENST00000560427 PPME1Q9Y570 386 aa14.61□□□□□ -0.07
NEDD8-208ENST00000560427 PCDHB6Q9Y5E3 794 aa14.61□□□□□ -0.07
NEDD8-208ENST00000560427 STK24Q9Y6E0 443 aa14.61□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms