RNA–Protein interactions for RNA: ENST00000559933.1

SPG11-220, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 2

Gene SPG11, Length 518 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-220ENST00000559933 FOXK2Q01167 660 aa5.97□□□□□ -1.45
SPG11-220ENST00000559933 CAP1Q01518 475 aa5.97□□□□□ -1.45
SPG11-220ENST00000559933 DNM1Q05193 864 aaKnown RBP5.97□□□□□ -1.45
SPG11-220ENST00000559933 TNP2Q05952 138 aa5.97□□□□□ -1.45
SPG11-220ENST00000559933 TRIM29Q14134 588 aa5.97□□□□□ -1.45
SPG11-220ENST00000559933 TAF1CQ15572 869 aaPredicted RBP5.97□□□□□ -1.45
SPG11-220ENST00000559933 DEFB115Q30KQ5 88 aa5.97□□□□□ -1.45
SPG11-220ENST00000559933 TBCELQ5QJ74 424 aa5.97□□□□□ -1.45
SPG11-220ENST00000559933 LBX2Q6XYB7 198 aa5.97□□□□□ -1.45
SPG11-220ENST00000559933 SLCO4C1Q6ZQN7 724 aa5.97□□□□□ -1.45
SPG11-220ENST00000559933 PIK3AP1Q6ZUJ8 805 aa5.97□□□□□ -1.45
SPG11-220ENST00000559933 FASTKD5Q7L8L6 764 aaKnown RBP5.97□□□□□ -1.45
SPG11-220ENST00000559933 ANKRD23Q86SG2 305 aa5.97□□□□□ -1.45
SPG11-220ENST00000559933 FCHSD1Q86WN1 690 aa5.97□□□□□ -1.45
SPG11-220ENST00000559933 PRPF38AQ8NAV1 312 aaKnown RBP5.97□□□□□ -1.45
SPG11-220ENST00000559933 SMCR8Q8TEV9 937 aaPredicted RBP5.97□□□□□ -1.45
SPG11-220ENST00000559933 CLEC4DQ8WXI8 215 aa5.97□□□□□ -1.45
SPG11-220ENST00000559933 WASF1Q92558 559 aa5.97□□□□□ -1.45
SPG11-220ENST00000559933 AMNQ9BXJ7 453 aa5.97□□□□□ -1.45
SPG11-220ENST00000559933 MOV10L1Q9BXT6 1211 aaKnown RBP5.97□□□□□ -1.45
SPG11-220ENST00000559933 PORCNQ9H237 461 aa5.97□□□□□ -1.45
SPG11-220ENST00000559933 EFCC1Q9HA90 598 aa5.97□□□□□ -1.45
SPG11-220ENST00000559933 RNF146Q9NTX7 359 aa5.97□□□□□ -1.45
SPG11-220ENST00000559933 TFIP11Q9UBB9 837 aaKnown RBP5.97□□□□□ -1.45
SPG11-220ENST00000559933 MKL2Q9ULH7 1088 aa5.97□□□□□ -1.45
SPG11-220ENST00000559933 PCDHA6Q9UN73 950 aa5.97□□□□□ -1.45
SPG11-220ENST00000559933 ADAMTS5Q9UNA0 930 aa5.97□□□□□ -1.45
SPG11-220ENST00000559933 CNPY2Q9Y2B0 182 aa5.97□□□□□ -1.45
SPG11-220ENST00000559933 CTDP1Q9Y5B0 961 aaPredicted RBP5.97□□□□□ -1.45
SPG11-220ENST00000559933 PCDHA8Q9Y5H6 950 aa5.97□□□□□ -1.45
SPG11-220ENST00000559933 GPC6Q9Y625 555 aaPredicted RBP5.97□□□□□ -1.45
SPG11-220ENST00000559933 MRVI1Q9Y6F6 885 aa5.97□□□□□ -1.45
SPG11-220ENST00000559933 PLXNB2O15031 1838 aa5.97□□□□□ -1.45
SPG11-220ENST00000559933 WDR33Q9C0J8 1336 aaKnown RBP5.97□□□□□ -1.45
SPG11-220ENST00000559933 LRRC37A2A6NM11 1700 aa5.96□□□□□ -1.45
SPG11-220ENST00000559933 MANSC4A6NHS7 340 aaPredicted RBP5.96□□□□□ -1.46
SPG11-220ENST00000559933 UNCXA6NJT0 531 aa5.96□□□□□ -1.46
SPG11-220ENST00000559933 C2CD2LO14523 706 aa5.96□□□□□ -1.46
SPG11-220ENST00000559933 FIBPO43427 364 aa5.96□□□□□ -1.46
SPG11-220ENST00000559933 EDIL3O43854 480 aa5.96□□□□□ -1.46
SPG11-220ENST00000559933 TBC1D8O95759 1140 aa5.96□□□□□ -1.46
SPG11-220ENST00000559933 FAM157BP0CG42 384 aa5.96□□□□□ -1.46
SPG11-220ENST00000559933 ERCC3P19447 782 aa5.96□□□□□ -1.46
SPG11-220ENST00000559933 CD33P20138 364 aa5.96□□□□□ -1.46
SPG11-220ENST00000559933 PDCP20941 246 aa5.96□□□□□ -1.46
SPG11-220ENST00000559933 CALML3P27482 149 aa5.96□□□□□ -1.46
SPG11-220ENST00000559933 ADH6P28332 368 aa5.96□□□□□ -1.46
SPG11-220ENST00000559933 SMARCA1P28370 1054 aa5.96□□□□□ -1.46
SPG11-220ENST00000559933 CTGFP29279 349 aa5.96□□□□□ -1.46
SPG11-220ENST00000559933 TXLNAP40222 546 aa5.96□□□□□ -1.46
SPG11-220ENST00000559933 STAT3P40763 770 aa5.96□□□□□ -1.46
SPG11-220ENST00000559933 GSK3AP49840 483 aa5.96□□□□□ -1.46
SPG11-220ENST00000559933 TOB1P50616 345 aaPredicted RBP5.96□□□□□ -1.46
SPG11-220ENST00000559933 ERVK-24P63145 666 aa5.96□□□□□ -1.46
SPG11-220ENST00000559933 CNTN2Q02246 1040 aa5.96□□□□□ -1.46
SPG11-220ENST00000559933 CRHR2Q13324 411 aa5.96□□□□□ -1.46
SPG11-220ENST00000559933 LAMC2Q13753 1193 aa5.96□□□□□ -1.46
SPG11-220ENST00000559933 GNL2Q13823 731 aaKnown RBP5.96□□□□□ -1.46
SPG11-220ENST00000559933 INF2Q27J81 1249 aa5.96□□□□□ -1.46
SPG11-220ENST00000559933 WDR78Q5VTH9 848 aa5.96□□□□□ -1.46
SPG11-220ENST00000559933 NSMFQ6X4W1 530 aa5.96□□□□□ -1.46
SPG11-220ENST00000559933 LRRC69Q6ZNQ3 347 aa5.96□□□□□ -1.46
SPG11-220ENST00000559933 NCAPG2Q86XI2 1143 aa5.96□□□□□ -1.46
SPG11-220ENST00000559933 NOSTRINQ8IVI9 506 aa5.96□□□□□ -1.46
SPG11-220ENST00000559933 BLIDQ8IZY5 108 aa5.96□□□□□ -1.46
SPG11-220ENST00000559933 ZNF295-AS1Q8N0V1 137 aa5.96□□□□□ -1.46
SPG11-220ENST00000559933 CCDC148Q8NFR7 591 aa5.96□□□□□ -1.46
SPG11-220ENST00000559933 IL31RAQ8NI17 732 aa5.96□□□□□ -1.46
SPG11-220ENST00000559933 GJA10Q969M2 543 aa5.96□□□□□ -1.46
SPG11-220ENST00000559933 USP28Q96RU2 1077 aa5.96□□□□□ -1.46
SPG11-220ENST00000559933 PARK7Q99497 189 aaKnown RBP5.96□□□□□ -1.46
SPG11-220ENST00000559933 TEX13BQ9BXU2 312 aa5.96□□□□□ -1.46
SPG11-220ENST00000559933 ANO3Q9BYT9 981 aa5.96□□□□□ -1.46
SPG11-220ENST00000559933 ARHGAP39Q9C0H5 1083 aa5.96□□□□□ -1.46
SPG11-220ENST00000559933 SPATC1LQ9H0A9 340 aa5.96□□□□□ -1.46
SPG11-220ENST00000559933 ZMYND12Q9H0C1 365 aa5.96□□□□□ -1.46
SPG11-220ENST00000559933 PSTPIP2Q9H939 334 aa5.96□□□□□ -1.46
SPG11-220ENST00000559933 MARK1Q9P0L2 795 aa5.96□□□□□ -1.46
SPG11-220ENST00000559933 PCDHA4Q9UN74 947 aa5.96□□□□□ -1.46
SPG11-220ENST00000559933 KIAA1024Q9UPX6 916 aa5.96□□□□□ -1.46
SPG11-220ENST00000559933 CLIC4Q9Y696 253 aa5.96□□□□□ -1.46
SPG11-220ENST00000559933 ASTN1O14525 1302 aa5.96□□□□□ -1.46
SPG11-220ENST00000559933 ABCB11O95342 1321 aa5.96□□□□□ -1.46
SPG11-220ENST00000559933 MYH7BA7E2Y1 1941 aa5.95□□□□□ -1.46
SPG11-220ENST00000559933 ESYT2A0FGR8 921 aa5.95□□□□□ -1.46
SPG11-220ENST00000559933 hCG_1984214I3L0E3 225 aa5.95□□□□□ -1.46
SPG11-220ENST00000559933 SLC37A4O43826 429 aa5.95□□□□□ -1.46
SPG11-220ENST00000559933 BAG4O95429 457 aaKnown RBP5.95□□□□□ -1.46
SPG11-220ENST00000559933 TDP2O95551 362 aa5.95□□□□□ -1.46
SPG11-220ENST00000559933 IGHA1P01876 353 aa5.95□□□□□ -1.46
SPG11-220ENST00000559933 PGK2P07205 417 aa5.95□□□□□ -1.46
SPG11-220ENST00000559933 XBP1P17861 261 aa5.95□□□□□ -1.46
SPG11-220ENST00000559933 EIF2AK2P19525 551 aaKnown RBP5.95□□□□□ -1.46
SPG11-220ENST00000559933 PTGS1P23219 599 aa5.95□□□□□ -1.46
SPG11-220ENST00000559933 U2AF2P26368 475 aaKnown RBP eCLIP5.95□□□□□ -1.46
SPG11-220ENST00000559933 EPHA4P54764 986 aa5.95□□□□□ -1.46
SPG11-220ENST00000559933 SEC13P55735 322 aa5.95□□□□□ -1.46
SPG11-220ENST00000559933 NUCB2P80303 420 aa5.95□□□□□ -1.46
SPG11-220ENST00000559933 BAATQ14032 418 aaPredicted RBP5.95□□□□□ -1.46
SPG11-220ENST00000559933 ZNF174Q15697 407 aa5.95□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms