RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 CYP11B2P19099 503 aa8.02□□□□□ -1.13
VPS13C-206ENST00000558338 SLC12A3P55017 1021 aa8.02□□□□□ -1.13
VPS13C-206ENST00000558338 ITIH3Q06033 890 aa8.02□□□□□ -1.13
VPS13C-206ENST00000558338 USP17L24Q0WX57 530 aa8.02□□□□□ -1.13
VPS13C-206ENST00000558338 MAP2K5Q13163 448 aa8.02□□□□□ -1.13
VPS13C-206ENST00000558338 SMC1AQ14683 1233 aaKnown RBP8.02□□□□□ -1.13
VPS13C-206ENST00000558338 SKIV2LQ15477 1246 aaKnown RBP8.02□□□□□ -1.13
VPS13C-206ENST00000558338 ECM1Q16610 540 aa8.02□□□□□ -1.13
VPS13C-206ENST00000558338 SLC9C1Q4G0N8 1177 aa8.02□□□□□ -1.13
VPS13C-206ENST00000558338 HERC4Q5GLZ8 1057 aaPredicted RBP8.02□□□□□ -1.13
VPS13C-206ENST00000558338 USP17L6PQ6QN14 398 aa8.02□□□□□ -1.13
VPS13C-206ENST00000558338 ETNPPLQ8TBG4 499 aa8.02□□□□□ -1.13
VPS13C-206ENST00000558338 CAGE1Q8TC20 777 aa8.02□□□□□ -1.13
VPS13C-206ENST00000558338 FUT8Q9BYC5 575 aa8.02□□□□□ -1.13
VPS13C-206ENST00000558338 UBXN6Q9BZV1 441 aa8.02□□□□□ -1.13
VPS13C-206ENST00000558338 SH2D4AQ9H788 454 aa8.02□□□□□ -1.13
VPS13C-206ENST00000558338 FAM207AQ9NSI2 230 aaPredicted RBP8.02□□□□□ -1.13
VPS13C-206ENST00000558338 PCDHA13Q9Y5I0 950 aa8.02□□□□□ -1.13
VPS13C-206ENST00000558338 UTP18Q9Y5J1 556 aaKnown RBP eCLIP8.02□□□□□ -1.13
VPS13C-206ENST00000558338 TNS1Q9HBL0 1735 aaKnown RBP8.02□□□□□ -1.13
VPS13C-206ENST00000558338 ZC3H4Q9UPT8 1303 aaKnown RBP8.02□□□□□ -1.13
VPS13C-206ENST00000558338 LOXHD1Q8IVV2 1947 aa8.01□□□□□ -1.13
VPS13C-206ENST00000558338 CCDC66A2RUB6 948 aa8.01□□□□□ -1.13
VPS13C-206ENST00000558338 LRRC53A6NM62 1247 aa8.01□□□□□ -1.13
VPS13C-206ENST00000558338 E9PMD0 336 aa8.01□□□□□ -1.13
VPS13C-206ENST00000558338 ATP1A1P05023 1023 aaKnown RBP8.01□□□□□ -1.13
VPS13C-206ENST00000558338 SERPING1P05155 500 aa8.01□□□□□ -1.13
VPS13C-206ENST00000558338 GAP43P17677 238 aa8.01□□□□□ -1.13
VPS13C-206ENST00000558338 TCP1P17987 556 aaKnown RBP8.01□□□□□ -1.13
VPS13C-206ENST00000558338 MUTP22033 750 aa8.01□□□□□ -1.13
VPS13C-206ENST00000558338 OAS2P29728 719 aaKnown RBP8.01□□□□□ -1.13
VPS13C-206ENST00000558338 STAT2P52630 851 aa8.01□□□□□ -1.13
VPS13C-206ENST00000558338 USP14P54578 494 aa8.01□□□□□ -1.13
VPS13C-206ENST00000558338 PRR16Q569H4 304 aa8.01□□□□□ -1.13
VPS13C-206ENST00000558338 SH3D19Q5HYK7 790 aa8.01□□□□□ -1.13
VPS13C-206ENST00000558338 BEND6Q5SZJ8 279 aaPredicted RBP8.01□□□□□ -1.13
VPS13C-206ENST00000558338 SFMBT2Q5VUG0 894 aa8.01□□□□□ -1.13
VPS13C-206ENST00000558338 TAF3Q5VWG9 929 aa8.01□□□□□ -1.13
VPS13C-206ENST00000558338 ZNF772Q68DY9 489 aaPredicted RBP8.01□□□□□ -1.13
VPS13C-206ENST00000558338 RRAGAQ7L523 313 aa8.01□□□□□ -1.13
VPS13C-206ENST00000558338 SH3BP5LQ7L8J4 393 aa8.01□□□□□ -1.13
VPS13C-206ENST00000558338 ZFPM1Q8IX07 1006 aa8.01□□□□□ -1.13
VPS13C-206ENST00000558338 RNF10Q8N5U6 811 aaKnown RBP8.01□□□□□ -1.13
VPS13C-206ENST00000558338 SYT2Q8N9I0 419 aaPredicted RBP8.01□□□□□ -1.13
VPS13C-206ENST00000558338 BAP1Q92560 729 aa8.01□□□□□ -1.13
VPS13C-206ENST00000558338 PBXIP1Q96AQ6 731 aa8.01□□□□□ -1.13
VPS13C-206ENST00000558338 POLR3CQ9BUI4 534 aaPredicted RBP8.01□□□□□ -1.13
VPS13C-206ENST00000558338 EMILIN3Q9NT22 766 aa8.01□□□□□ -1.13
VPS13C-206ENST00000558338 ARHGAP20Q9P2F6 1191 aa8.01□□□□□ -1.13
VPS13C-206ENST00000558338 TRIM10Q9UDY6 481 aa8.01□□□□□ -1.13
VPS13C-206ENST00000558338 HDAC9Q9UKV0 1011 aa8.01□□□□□ -1.13
VPS13C-206ENST00000558338 PCDHA2Q9Y5H9 948 aa8.01□□□□□ -1.13
VPS13C-206ENST00000558338 UBE4BO95155 1302 aa8.01□□□□□ -1.13
VPS13C-206ENST00000558338 RBAK-RBAKDNI3L0D1 243 aa8□□□□□ -1.13
VPS13C-206ENST00000558338 SLC16A3O15427 465 aaKnown RBP8□□□□□ -1.13
VPS13C-206ENST00000558338 TBCAO75347 108 aaKnown RBP8□□□□□ -1.13
VPS13C-206ENST00000558338 MED24O75448 989 aa8□□□□□ -1.13
VPS13C-206ENST00000558338 ABL1P00519 1130 aa8□□□□□ -1.13
VPS13C-206ENST00000558338 RHOXF2BP0C7M4 288 aa8□□□□□ -1.13
VPS13C-206ENST00000558338 RPL13P26373 211 aaKnown RBP8□□□□□ -1.13
VPS13C-206ENST00000558338 ANXA13P27216 316 aa8□□□□□ -1.13
VPS13C-206ENST00000558338 ZNF76P36508 570 aa8□□□□□ -1.13
VPS13C-206ENST00000558338 EIF4A3P38919 411 aaKnown RBP8□□□□□ -1.13
VPS13C-206ENST00000558338 CACNB3P54284 484 aa8□□□□□ -1.13
VPS13C-206ENST00000558338 SPIRE1Q08AE8 756 aa8□□□□□ -1.13
VPS13C-206ENST00000558338 LRRC41Q15345 812 aa8□□□□□ -1.13
VPS13C-206ENST00000558338 BMT2Q1RMZ1 405 aa8□□□□□ -1.13
VPS13C-206ENST00000558338 TDRD12Q587J7 1177 aaKnown RBP8□□□□□ -1.13
VPS13C-206ENST00000558338 NCAPH2Q6IBW4 605 aa8□□□□□ -1.13
VPS13C-206ENST00000558338 ZNF572Q7Z3I7 529 aaPredicted RBP8□□□□□ -1.13
VPS13C-206ENST00000558338 FRMD5Q7Z6J6 570 aa8□□□□□ -1.13
VPS13C-206ENST00000558338 TRIM59Q8IWR1 403 aa8□□□□□ -1.13
VPS13C-206ENST00000558338 EEF2KMTQ96G04 330 aa8□□□□□ -1.13
VPS13C-206ENST00000558338 CSRNP1Q96S65 589 aa8□□□□□ -1.13
VPS13C-206ENST00000558338 RHOXF2Q9BQY4 288 aa8□□□□□ -1.13
VPS13C-206ENST00000558338 LSM14BQ9BX40 385 aaKnown RBP8□□□□□ -1.13
VPS13C-206ENST00000558338 EPC1Q9H2F5 836 aa8□□□□□ -1.13
VPS13C-206ENST00000558338 KCTD10Q9H3F6 313 aa8□□□□□ -1.13
VPS13C-206ENST00000558338 VIPAS39Q9H9C1 493 aa8□□□□□ -1.13
VPS13C-206ENST00000558338 METTL14Q9HCE5 456 aaKnown RBP8□□□□□ -1.13
VPS13C-206ENST00000558338 TUFT1Q9NNX1 390 aa8□□□□□ -1.13
VPS13C-206ENST00000558338 PRDM4Q9UKN5 801 aa8□□□□□ -1.13
VPS13C-206ENST00000558338 SNX12Q9UMY4 172 aa8□□□□□ -1.13
VPS13C-206ENST00000558338 TRAF3IP3Q9Y228 551 aa8□□□□□ -1.13
VPS13C-206ENST00000558338 RABGAP1Q9Y3P9 1069 aa8□□□□□ -1.13
VPS13C-206ENST00000558338 HYOU1Q9Y4L1 999 aa8□□□□□ -1.13
VPS13C-206ENST00000558338 ATP8B3O60423 1300 aa8□□□□□ -1.13
VPS13C-206ENST00000558338 MACROD2A1Z1Q3 448 aa8□□□□□ -1.13
VPS13C-206ENST00000558338 FAM196BA6NMK8 535 aa8□□□□□ -1.13
VPS13C-206ENST00000558338 PDXKO00764 312 aa8□□□□□ -1.13
VPS13C-206ENST00000558338 PLA2G6O60733 806 aa8□□□□□ -1.13
VPS13C-206ENST00000558338 SASH3O75995 380 aa8□□□□□ -1.13
VPS13C-206ENST00000558338 GDF11O95390 407 aa8□□□□□ -1.13
VPS13C-206ENST00000558338 EYA4O95677 639 aa8□□□□□ -1.13
VPS13C-206ENST00000558338 GH2P01242 217 aa8□□□□□ -1.13
VPS13C-206ENST00000558338 MAGEA1P43355 309 aa8□□□□□ -1.13
VPS13C-206ENST00000558338 MFSD10Q14728 455 aa8□□□□□ -1.13
VPS13C-206ENST00000558338 AOC3Q16853 763 aa8□□□□□ -1.13
VPS13C-206ENST00000558338 USH1GQ495M9 461 aa8□□□□□ -1.13
VPS13C-206ENST00000558338 C10orf76Q5T2E6 689 aa8□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms