RNA–Protein interactions for RNA: ENST00000558117.1

RTF1-204, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 4

Gene RTF1, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-204ENST00000558117 CRB1P82279 1406 aa8.32□□□□□ -1.08
RTF1-204ENST00000558117 ANKRD50Q9ULJ7 1429 aa8.32□□□□□ -1.08
RTF1-204ENST00000558117 TEX51A0A1B0GUA7 166 aa8.32□□□□□ -1.08
RTF1-204ENST00000558117 IQCA1LA6NCM1 817 aa8.32□□□□□ -1.08
RTF1-204ENST00000558117 SCG5P05408 212 aa8.32□□□□□ -1.08
RTF1-204ENST00000558117 SRSF3P84103 164 aaKnown RBP8.32□□□□□ -1.08
RTF1-204ENST00000558117 HSP90AA2PQ14568 343 aaPredicted RBP8.32□□□□□ -1.08
RTF1-204ENST00000558117 YOD1Q5VVQ6 348 aaPredicted RBP8.32□□□□□ -1.08
RTF1-204ENST00000558117 MBLAC2Q68D91 279 aa8.32□□□□□ -1.08
RTF1-204ENST00000558117 DENND5AQ6IQ26 1287 aa8.32□□□□□ -1.08
RTF1-204ENST00000558117 LRP10Q7Z4F1 713 aa8.32□□□□□ -1.08
RTF1-204ENST00000558117 COL23A1Q86Y22 540 aaPredicted RBP8.32□□□□□ -1.08
RTF1-204ENST00000558117 TMEM145Q8NBT3 493 aa8.32□□□□□ -1.08
RTF1-204ENST00000558117 ZNF669Q96BR6 464 aaPredicted RBP8.32□□□□□ -1.08
RTF1-204ENST00000558117 CCDC140Q96MF4 163 aa8.32□□□□□ -1.08
RTF1-204ENST00000558117 DNAJC7Q99615 494 aa8.32□□□□□ -1.08
RTF1-204ENST00000558117 IER2Q9BTL4 223 aa8.32□□□□□ -1.08
RTF1-204ENST00000558117 LMO7Q8WWI1 1683 aa8.32□□□□□ -1.08
RTF1-204ENST00000558117 GPRASP1Q5JY77 1395 aa8.32□□□□□ -1.08
RTF1-204ENST00000558117 ABCC11Q96J66 1382 aa8.32□□□□□ -1.08
RTF1-204ENST00000558117 PLEKHG2Q9H7P9 1386 aa8.32□□□□□ -1.08
RTF1-204ENST00000558117 COL5A2P05997 1499 aaPredicted RBP8.32□□□□□ -1.08
RTF1-204ENST00000558117 PPP1R11O60927 126 aaPredicted RBP8.31□□□□□ -1.08
RTF1-204ENST00000558117 CPP00450 1065 aa8.31□□□□□ -1.08
RTF1-204ENST00000558117 GLDCP23378 1020 aa8.31□□□□□ -1.08
RTF1-204ENST00000558117 SSRP1Q08945 709 aaKnown RBP8.31□□□□□ -1.08
RTF1-204ENST00000558117 BMS1Q14692 1282 aaKnown RBP8.31□□□□□ -1.08
RTF1-204ENST00000558117 NR1I3Q14994 352 aa8.31□□□□□ -1.08
RTF1-204ENST00000558117 CCDC144BQ3MJ40 725 aa8.31□□□□□ -1.08
RTF1-204ENST00000558117 IQCEQ6IPM2 695 aa8.31□□□□□ -1.08
RTF1-204ENST00000558117 LRRC47Q8N1G4 583 aaKnown RBP8.31□□□□□ -1.08
RTF1-204ENST00000558117 LZTR1Q8N653 840 aa8.31□□□□□ -1.08
RTF1-204ENST00000558117 C1orf159Q96HA4 380 aa8.31□□□□□ -1.08
RTF1-204ENST00000558117 MMP19Q99542 508 aa8.31□□□□□ -1.08
RTF1-204ENST00000558117 AARSD1Q9BTE6 412 aaKnown RBP8.31□□□□□ -1.08
RTF1-204ENST00000558117 DBR1Q9UK59 544 aaKnown RBP8.31□□□□□ -1.08
RTF1-204ENST00000558117 RWDD3Q9Y3V2 267 aa8.31□□□□□ -1.08
RTF1-204ENST00000558117 MYOCOSA0A1B0GUC4 107 aa8.3□□□□□ -1.08
RTF1-204ENST00000558117 C7orf72A4D263 438 aa8.3□□□□□ -1.08
RTF1-204ENST00000558117 ETV2O00321 342 aaPredicted RBP8.3□□□□□ -1.08
RTF1-204ENST00000558117 MEFVO15553 781 aaPredicted RBP8.3□□□□□ -1.08
RTF1-204ENST00000558117 PRODHO43272 600 aa8.3□□□□□ -1.08
RTF1-204ENST00000558117 ADCY3O60266 1144 aa8.3□□□□□ -1.08
RTF1-204ENST00000558117 DLX3O60479 287 aa8.3□□□□□ -1.08
RTF1-204ENST00000558117 VIPR1P32241 457 aa8.3□□□□□ -1.08
RTF1-204ENST00000558117 IFRD2Q12894 506 aaPredicted RBP8.3□□□□□ -1.08
RTF1-204ENST00000558117 INF2Q27J81 1249 aa8.3□□□□□ -1.08
RTF1-204ENST00000558117 HABP4Q5JVS0 413 aaKnown RBP8.3□□□□□ -1.08
RTF1-204ENST00000558117 E4F1Q66K89 784 aaPredicted RBP8.3□□□□□ -1.08
RTF1-204ENST00000558117 TMC6Q7Z403 805 aa8.3□□□□□ -1.08
RTF1-204ENST00000558117 CCDC103Q8IW40 242 aa8.3□□□□□ -1.08
RTF1-204ENST00000558117 USP33Q8TEY7 942 aa8.3□□□□□ -1.08
RTF1-204ENST00000558117 ZSWIM4Q9H7M6 989 aa8.3□□□□□ -1.08
RTF1-204ENST00000558117 GULP1Q9UBP9 304 aa8.3□□□□□ -1.08
RTF1-204ENST00000558117 CPDO75976 1380 aa8.3□□□□□ -1.08
RTF1-204ENST00000558117 ANKRD30BQ9BXX2 1392 aa8.3□□□□□ -1.08
RTF1-204ENST00000558117 TUBGCP6Q96RT7 1819 aa8.29□□□□□ -1.08
RTF1-204ENST00000558117 SRGAP3O43295 1099 aa8.29□□□□□ -1.08
RTF1-204ENST00000558117 CYBBP04839 570 aa8.29□□□□□ -1.08
RTF1-204ENST00000558117 DBHP09172 617 aa8.29□□□□□ -1.08
RTF1-204ENST00000558117 FAM153BP0C7A2 387 aa8.29□□□□□ -1.08
RTF1-204ENST00000558117 C1QTNF9P0C862 333 aa8.29□□□□□ -1.08
RTF1-204ENST00000558117 YBX1P67809 324 aaKnown RBP8.29□□□□□ -1.08
RTF1-204ENST00000558117 SLC35F1Q5T1Q4 408 aa8.29□□□□□ -1.08
RTF1-204ENST00000558117 FOXB2Q5VYV0 432 aa8.29□□□□□ -1.08
RTF1-204ENST00000558117 PAQR3Q6TCH7 311 aa8.29□□□□□ -1.08
RTF1-204ENST00000558117 RPTNQ6XPR3 784 aa8.29□□□□□ -1.08
RTF1-204ENST00000558117 ATG14Q6ZNE5 492 aa8.29□□□□□ -1.08
RTF1-204ENST00000558117 DPH6Q7L8W6 267 aa8.29□□□□□ -1.08
RTF1-204ENST00000558117 DIO2Q92813 273 aa8.29□□□□□ -1.08
RTF1-204ENST00000558117 KRTAP9-2Q9BYQ4 174 aa8.29□□□□□ -1.08
RTF1-204ENST00000558117 PIF1Q9H611 641 aa8.29□□□□□ -1.08
RTF1-204ENST00000558117 KLHL14Q9P2G3 628 aa8.29□□□□□ -1.08
RTF1-204ENST00000558117 ANKARQ7Z5J8 1434 aa8.29□□□□□ -1.08
RTF1-204ENST00000558117 NHSQ6T4R5 1651 aa8.28□□□□□ -1.08
RTF1-204ENST00000558117 TRAV20A0A0B4J274 112 aa8.28□□□□□ -1.08
RTF1-204ENST00000558117 MED14OSP0DP75 135 aa8.28□□□□□ -1.08
RTF1-204ENST00000558117 PABPC1P11940 636 aaKnown RBP8.28□□□□□ -1.08
RTF1-204ENST00000558117 DLG4P78352 724 aa8.28□□□□□ -1.08
RTF1-204ENST00000558117 KCNAB2Q13303 367 aa8.28□□□□□ -1.08
RTF1-204ENST00000558117 PLEKHN1Q494U1 663 aaPredicted RBP8.28□□□□□ -1.08
RTF1-204ENST00000558117 ZC3H14Q6PJT7 736 aaKnown RBP8.28□□□□□ -1.08
RTF1-204ENST00000558117 PPIL6Q8IXY8 311 aa8.28□□□□□ -1.08
RTF1-204ENST00000558117 KCTD13Q8WZ19 329 aa8.28□□□□□ -1.08
RTF1-204ENST00000558117 OSBP2Q969R2 916 aa8.28□□□□□ -1.08
RTF1-204ENST00000558117 GCC1Q96CN9 775 aa8.28□□□□□ -1.08
RTF1-204ENST00000558117 KRTAP4-12Q9BQ66 201 aa8.28□□□□□ -1.08
RTF1-204ENST00000558117 USP6P35125 1406 aa8.28□□□□□ -1.08
RTF1-204ENST00000558117 DBX1A6NMT0 343 aa8.27□□□□□ -1.09
RTF1-204ENST00000558117 MYO1BO43795 1136 aa8.27□□□□□ -1.09
RTF1-204ENST00000558117 FGFR1P11362 822 aa8.27□□□□□ -1.09
RTF1-204ENST00000558117 LCP1P13796 627 aa8.27□□□□□ -1.09
RTF1-204ENST00000558117 MAPKAPK2P49137 400 aa8.27□□□□□ -1.09
RTF1-204ENST00000558117 MAP4K2Q12851 820 aa8.27□□□□□ -1.09
RTF1-204ENST00000558117 CBX2Q14781 532 aaPredicted RBP8.27□□□□□ -1.09
RTF1-204ENST00000558117 NSMFQ6X4W1 530 aa8.27□□□□□ -1.09
RTF1-204ENST00000558117 LILRB2Q8N423 598 aa8.27□□□□□ -1.09
RTF1-204ENST00000558117 ZBTB38Q8NAP3 1195 aaPredicted RBP8.27□□□□□ -1.09
RTF1-204ENST00000558117 DPF3Q92784 378 aa8.27□□□□□ -1.09
RTF1-204ENST00000558117 TOX2Q96NM4 488 aa8.27□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms