RNA–Protein interactions for RNA: ENST00000553855.5

PSEN1-209, Transcript of presenilin 1, humanhuman

TSL 1 (best)

Gene PSEN1, Length 1,254 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSEN1-209ENST00000553855 FRMPD4Q14CM0 1322 aa9.5□□□□□ -0.89
PSEN1-209ENST00000553855 PPFIA3O75145 1194 aa9.49□□□□□ -0.89
PSEN1-209ENST00000553855 ATG7O95352 703 aa9.49□□□□□ -0.89
PSEN1-209ENST00000553855 ARIH2O95376 493 aa9.49□□□□□ -0.89
PSEN1-209ENST00000553855 CLTBP09497 229 aa9.49□□□□□ -0.89
PSEN1-209ENST00000553855 SUPT20HL2P0C7V6 817 aa9.49□□□□□ -0.89
PSEN1-209ENST00000553855 SYN1P17600 705 aa9.49□□□□□ -0.89
PSEN1-209ENST00000553855 ICAM3P32942 547 aa9.49□□□□□ -0.89
PSEN1-209ENST00000553855 MCM2P49736 904 aa9.49□□□□□ -0.89
PSEN1-209ENST00000553855 TLE2Q04725 743 aa9.49□□□□□ -0.89
PSEN1-209ENST00000553855 MTMR1Q13613 665 aa9.49□□□□□ -0.89
PSEN1-209ENST00000553855 ITGA7Q13683 1181 aa9.49□□□□□ -0.89
PSEN1-209ENST00000553855 PKN1Q16512 942 aa9.49□□□□□ -0.89
PSEN1-209ENST00000553855 CCSAPQ6IQ19 270 aaPredicted RBP9.49□□□□□ -0.89
PSEN1-209ENST00000553855 RNF19BQ6ZMZ0 732 aa9.49□□□□□ -0.89
PSEN1-209ENST00000553855 FAM184AQ8NB25 1140 aa9.49□□□□□ -0.89
PSEN1-209ENST00000553855 IL31RAQ8NI17 732 aa9.49□□□□□ -0.89
PSEN1-209ENST00000553855 PPTC7Q8NI37 304 aa9.49□□□□□ -0.89
PSEN1-209ENST00000553855 AFG1LQ8WV93 481 aa9.49□□□□□ -0.89
PSEN1-209ENST00000553855 GTF3C6Q969F1 213 aa9.49□□□□□ -0.89
PSEN1-209ENST00000553855 TOX2Q96NM4 488 aa9.49□□□□□ -0.89
PSEN1-209ENST00000553855 INPP4AQ96PE3 977 aaPredicted RBP9.49□□□□□ -0.89
PSEN1-209ENST00000553855 USB1Q9BQ65 265 aaKnown RBP9.49□□□□□ -0.89
PSEN1-209ENST00000553855 SENP7Q9BQF6 1050 aa9.49□□□□□ -0.89
PSEN1-209ENST00000553855 SDF4Q9BRK5 362 aa9.49□□□□□ -0.89
PSEN1-209ENST00000553855 SH2B1Q9NRF2 756 aaPredicted RBP9.49□□□□□ -0.89
PSEN1-209ENST00000553855 TMEM39AQ9NV64 488 aa9.49□□□□□ -0.89
PSEN1-209ENST00000553855 KIF3AQ9Y496 699 aa9.49□□□□□ -0.89
PSEN1-209ENST00000553855 STK36Q9NRP7 1315 aa9.49□□□□□ -0.89
PSEN1-209ENST00000553855 SPATA31C2B4DYI2 1134 aa9.48□□□□□ -0.89
PSEN1-209ENST00000553855 SORBS3O60504 671 aa9.48□□□□□ -0.89
PSEN1-209ENST00000553855 PPFIA4O75335 1185 aa9.48□□□□□ -0.89
PSEN1-209ENST00000553855 MMP3P08254 477 aa9.48□□□□□ -0.89
PSEN1-209ENST00000553855 RAG1P15918 1043 aa9.48□□□□□ -0.89
PSEN1-209ENST00000553855 UBA1P22314 1058 aaKnown RBP9.48□□□□□ -0.89
PSEN1-209ENST00000553855 SREBF1P36956 1147 aa9.48□□□□□ -0.89
PSEN1-209ENST00000553855 MRPS9P82933 396 aaKnown RBP9.48□□□□□ -0.89
PSEN1-209ENST00000553855 ARHGAP4P98171 946 aa9.48□□□□□ -0.89
PSEN1-209ENST00000553855 PURAQ00577 322 aaKnown RBP9.48□□□□□ -0.89
PSEN1-209ENST00000553855 ARHGAP1Q07960 439 aa9.48□□□□□ -0.89
PSEN1-209ENST00000553855 SNX17Q15036 470 aa9.48□□□□□ -0.89
PSEN1-209ENST00000553855 SAFBQ15424 915 aaKnown RBP eCLIP9.48□□□□□ -0.89
PSEN1-209ENST00000553855 ME3Q16798 604 aa9.48□□□□□ -0.89
PSEN1-209ENST00000553855 CELF3Q5SZQ8 465 aaKnown RBP9.48□□□□□ -0.89
PSEN1-209ENST00000553855 BLOC1S3Q6QNY0 202 aa9.48□□□□□ -0.89
PSEN1-209ENST00000553855 METTL7BQ6UX53 244 aa9.48□□□□□ -0.89
PSEN1-209ENST00000553855 BLIDQ8IZY5 108 aa9.48□□□□□ -0.89
PSEN1-209ENST00000553855 C7orf31Q8N865 590 aa9.48□□□□□ -0.89
PSEN1-209ENST00000553855 NECAB1Q8N987 351 aa9.48□□□□□ -0.89
PSEN1-209ENST00000553855 TNPO1Q92973 898 aaKnown RBP9.48□□□□□ -0.89
PSEN1-209ENST00000553855 EMID1Q96A84 441 aaPredicted RBP9.48□□□□□ -0.89
PSEN1-209ENST00000553855 PGBD1Q96JS3 809 aa9.48□□□□□ -0.89
PSEN1-209ENST00000553855 MXRA8Q9BRK3 442 aa9.48□□□□□ -0.89
PSEN1-209ENST00000553855 ALG1Q9BT22 464 aa9.48□□□□□ -0.89
PSEN1-209ENST00000553855 JADE2Q9NQC1 790 aa9.48□□□□□ -0.89
PSEN1-209ENST00000553855 TMEM260Q9NX78 707 aa9.48□□□□□ -0.89
PSEN1-209ENST00000553855 TSR3Q9UJK0 312 aaKnown RBP9.48□□□□□ -0.89
PSEN1-209ENST00000553855 ZNF215Q9UL58 517 aaPredicted RBP9.48□□□□□ -0.89
PSEN1-209ENST00000553855 PCDHA4Q9UN74 947 aa9.48□□□□□ -0.89
PSEN1-209ENST00000553855 BAZ2BQ9UIF8 2168 aaKnown RBP9.48□□□□□ -0.89
PSEN1-209ENST00000553855 CCDC194A0A1B0GVG4 234 aa9.47□□□□□ -0.89
PSEN1-209ENST00000553855 CTAGE5O15320 804 aa9.47□□□□□ -0.89
PSEN1-209ENST00000553855 ATP9BO43861 1147 aa9.47□□□□□ -0.89
PSEN1-209ENST00000553855 MARCH6O60337 910 aa9.47□□□□□ -0.89
PSEN1-209ENST00000553855 RGS20O76081 388 aa9.47□□□□□ -0.89
PSEN1-209ENST00000553855 HMGN5P82970 282 aaKnown RBP9.47□□□□□ -0.89
PSEN1-209ENST00000553855 SETQ01105 290 aaPredicted RBP9.47□□□□□ -0.89
PSEN1-209ENST00000553855 SP4Q02446 784 aa9.47□□□□□ -0.89
PSEN1-209ENST00000553855 PTPN11Q06124 597 aaPredicted RBP9.47□□□□□ -0.89
PSEN1-209ENST00000553855 GNL2Q13823 731 aaKnown RBP9.47□□□□□ -0.89
PSEN1-209ENST00000553855 CEP55Q53EZ4 464 aa9.47□□□□□ -0.89
PSEN1-209ENST00000553855 TMEM63BQ5T3F8 832 aa9.47□□□□□ -0.89
PSEN1-209ENST00000553855 CYFIP1Q7L576 1253 aa9.47□□□□□ -0.89
PSEN1-209ENST00000553855 ANKRD33Q7Z3H0 272 aa9.47□□□□□ -0.89
PSEN1-209ENST00000553855 KRT25Q7Z3Z0 450 aa9.47□□□□□ -0.89
PSEN1-209ENST00000553855 CCDC83Q8IWF9 413 aa9.47□□□□□ -0.89
PSEN1-209ENST00000553855 CCDC155Q8N6L0 562 aa9.47□□□□□ -0.89
PSEN1-209ENST00000553855 NAP1L4Q99733 375 aaKnown RBP9.47□□□□□ -0.89
PSEN1-209ENST00000553855 PKD2L1Q9P0L9 805 aa9.47□□□□□ -0.89
PSEN1-209ENST00000553855 UBIAD1Q9Y5Z9 338 aa9.47□□□□□ -0.89
PSEN1-209ENST00000553855 SMCHD1A6NHR9 2005 aa9.46□□□□□ -0.89
PSEN1-209ENST00000553855 ZBBXA8MT70 800 aa9.46□□□□□ -0.9
PSEN1-209ENST00000553855 FBXO45P0C2W1 286 aa9.46□□□□□ -0.9
PSEN1-209ENST00000553855 GNAT1P11488 350 aa9.46□□□□□ -0.9
PSEN1-209ENST00000553855 PTGS1P23219 599 aa9.46□□□□□ -0.9
PSEN1-209ENST00000553855 PSMC6P62333 389 aa9.46□□□□□ -0.9
PSEN1-209ENST00000553855 NONOQ15233 471 aaKnown RBP eCLIP9.46□□□□□ -0.9
PSEN1-209ENST00000553855 NBPF20Q3BBV1 942 aa9.46□□□□□ -0.9
PSEN1-209ENST00000553855 UTP14CQ5TAP6 766 aaKnown RBP9.46□□□□□ -0.9
PSEN1-209ENST00000553855 NFRKBQ6P4R8 1299 aa9.46□□□□□ -0.9
PSEN1-209ENST00000553855 BRICD5Q6PL45 260 aa9.46□□□□□ -0.9
PSEN1-209ENST00000553855 NIPA1Q7RTP0 329 aa9.46□□□□□ -0.9
PSEN1-209ENST00000553855 PLA2G4DQ86XP0 818 aa9.46□□□□□ -0.9
PSEN1-209ENST00000553855 TMEM199Q8N511 208 aa9.46□□□□□ -0.9
PSEN1-209ENST00000553855 SEPT1Q8WYJ6 367 aa9.46□□□□□ -0.9
PSEN1-209ENST00000553855 LLPHQ9BRT6 129 aaKnown RBP9.46□□□□□ -0.9
PSEN1-209ENST00000553855 UBE2OQ9C0C9 1292 aaKnown RBP9.46□□□□□ -0.9
PSEN1-209ENST00000553855 AZI2Q9H6S1 392 aa9.46□□□□□ -0.9
PSEN1-209ENST00000553855 JPH1Q9HDC5 661 aaPredicted RBP9.46□□□□□ -0.9
PSEN1-209ENST00000553855 PDLIM7Q9NR12 457 aa9.46□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms