RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 FAM20AQ96MK3 541 aa15.94■□□□□ 0.14
PTCH1-226ENST00000553011 NOC4LQ9BVI4 516 aaKnown RBP15.94■□□□□ 0.14
PTCH1-226ENST00000553011 ZNF302Q9NR11 478 aa15.94■□□□□ 0.14
PTCH1-226ENST00000553011 DISC1Q9NRI5 854 aa15.94■□□□□ 0.14
PTCH1-226ENST00000553011 SETD4Q9NVD3 440 aa15.94■□□□□ 0.14
PTCH1-226ENST00000553011 NOD1Q9Y239 953 aa15.94■□□□□ 0.14
PTCH1-226ENST00000553011 SAMM50Q9Y512 469 aa15.94■□□□□ 0.14
PTCH1-226ENST00000553011 PCDHA10Q9Y5I2 948 aa15.94■□□□□ 0.14
PTCH1-226ENST00000553011 C17orf102A2RUQ5 167 aa15.93■□□□□ 0.14
PTCH1-226ENST00000553011 TBX3O15119 743 aa15.93■□□□□ 0.14
PTCH1-226ENST00000553011 MARCH6O60337 910 aa15.93■□□□□ 0.14
PTCH1-226ENST00000553011 TIMP1P01033 207 aa15.93■□□□□ 0.14
PTCH1-226ENST00000553011 PSAPP07602 524 aa15.93■□□□□ 0.14
PTCH1-226ENST00000553011 HOXC8P31273 242 aa15.93■□□□□ 0.14
PTCH1-226ENST00000553011 CYP2C18P33260 490 aa15.93■□□□□ 0.14
PTCH1-226ENST00000553011 MCM7P33993 719 aa15.93■□□□□ 0.14
PTCH1-226ENST00000553011 PLCB4Q15147 1175 aa15.93■□□□□ 0.14
PTCH1-226ENST00000553011 TTC38Q5R3I4 469 aa15.93■□□□□ 0.14
PTCH1-226ENST00000553011 FAM160B1Q5W0V3 765 aa15.93■□□□□ 0.14
PTCH1-226ENST00000553011 CHRDL2Q6WN34 429 aa15.93■□□□□ 0.14
PTCH1-226ENST00000553011 PLPPR4Q7Z2D5 763 aa15.93■□□□□ 0.14
PTCH1-226ENST00000553011 MIER3Q7Z3K6 550 aa15.93■□□□□ 0.14
PTCH1-226ENST00000553011 GDF15Q99988 308 aa15.93■□□□□ 0.14
PTCH1-226ENST00000553011 TMEM60Q9H2L4 133 aa15.93■□□□□ 0.14
PTCH1-226ENST00000553011 HIPK3Q9H422 1215 aa15.93■□□□□ 0.14
PTCH1-226ENST00000553011 GABBR1Q9UBS5 961 aa15.93■□□□□ 0.14
PTCH1-226ENST00000553011 VAV3Q9UKW4 847 aa15.93■□□□□ 0.14
PTCH1-226ENST00000553011 VPS37CA5D8V6 355 aaPredicted RBP15.92■□□□□ 0.14
PTCH1-226ENST00000553011 TREHO43280 583 aa15.92■□□□□ 0.14
PTCH1-226ENST00000553011 NEMFO60524 1076 aa15.92■□□□□ 0.14
PTCH1-226ENST00000553011 ATP4AP20648 1035 aa15.92■□□□□ 0.14
PTCH1-226ENST00000553011 SFNP31947 248 aa15.92■□□□□ 0.14
PTCH1-226ENST00000553011 TRAPPC10P48553 1259 aa15.92■□□□□ 0.14
PTCH1-226ENST00000553011 TOB1P50616 345 aaPredicted RBP15.92■□□□□ 0.14
PTCH1-226ENST00000553011 JAK3P52333 1124 aa15.92■□□□□ 0.14
PTCH1-226ENST00000553011 CALCRLQ16602 461 aa15.92■□□□□ 0.14
PTCH1-226ENST00000553011 PDXDC2PQ6P474 469 aa15.92■□□□□ 0.14
PTCH1-226ENST00000553011 AFAP1L1Q8TED9 768 aa15.92■□□□□ 0.14
PTCH1-226ENST00000553011 LMBR1Q8WVP7 490 aa15.92■□□□□ 0.14
PTCH1-226ENST00000553011 DHX38Q92620 1227 aaKnown RBP15.92■□□□□ 0.14
PTCH1-226ENST00000553011 ATP6V0A1Q93050 837 aa15.92■□□□□ 0.14
PTCH1-226ENST00000553011 WNT8BQ93098 351 aa15.92■□□□□ 0.14
PTCH1-226ENST00000553011 LBHD1Q9BQE6 289 aaPredicted RBP15.92■□□□□ 0.14
PTCH1-226ENST00000553011 NOL7Q9UMY1 257 aaKnown RBP15.92■□□□□ 0.14
PTCH1-226ENST00000553011 TRPC6Q9Y210 931 aa15.92■□□□□ 0.14
PTCH1-226ENST00000553011 RANBP2P49792 3224 aaKnown RBP15.92■□□□□ 0.14
PTCH1-226ENST00000553011 LOXHD1Q8IVV2 1947 aa15.92■□□□□ 0.14
PTCH1-226ENST00000553011 EML1O00423 815 aa15.91■□□□□ 0.14
PTCH1-226ENST00000553011 BAG4O95429 457 aaKnown RBP15.91■□□□□ 0.14
PTCH1-226ENST00000553011 INSRRP14616 1297 aa15.91■□□□□ 0.14
PTCH1-226ENST00000553011 PDCP20941 246 aa15.91■□□□□ 0.14
PTCH1-226ENST00000553011 PPFIA1Q13136 1202 aa15.91■□□□□ 0.14
PTCH1-226ENST00000553011 PPP2R5CQ13362 524 aa15.91■□□□□ 0.14
PTCH1-226ENST00000553011 GRIK4Q16099 956 aa15.91■□□□□ 0.14
PTCH1-226ENST00000553011 UGCGQ16739 394 aa15.91■□□□□ 0.14
PTCH1-226ENST00000553011 MTMR9Q96QG7 549 aa15.91■□□□□ 0.14
PTCH1-226ENST00000553011 WNT8AQ9H1J5 351 aa15.91■□□□□ 0.14
PTCH1-226ENST00000553011 MAFBQ9Y5Q3 323 aaPredicted RBP15.91■□□□□ 0.14
PTCH1-226ENST00000553011 IGSF9BQ9UPX0 1349 aa15.91■□□□□ 0.14
PTCH1-226ENST00000553011 MYH15Q9Y2K3 1946 aa15.9■□□□□ 0.14
PTCH1-226ENST00000553011 POTEB3A0JP26 581 aa15.9■□□□□ 0.14
PTCH1-226ENST00000553011 ZNF862O60290 1169 aa15.9■□□□□ 0.14
PTCH1-226ENST00000553011 SYT1P21579 422 aa15.9■□□□□ 0.14
PTCH1-226ENST00000553011 TXKP42681 527 aa15.9■□□□□ 0.14
PTCH1-226ENST00000553011 SLC26A2P50443 739 aa15.9■□□□□ 0.14
PTCH1-226ENST00000553011 CCL23P55773 120 aa15.9■□□□□ 0.14
PTCH1-226ENST00000553011 IGBP1P78318 339 aa15.9■□□□□ 0.14
PTCH1-226ENST00000553011 ADAM17P78536 824 aa15.9■□□□□ 0.14
PTCH1-226ENST00000553011 SPIRE1Q08AE8 756 aa15.9■□□□□ 0.14
PTCH1-226ENST00000553011 PTK7Q13308 1070 aa15.9■□□□□ 0.14
PTCH1-226ENST00000553011 MFSD5Q6N075 450 aa15.9■□□□□ 0.14
PTCH1-226ENST00000553011 POTEBQ6S5H4 581 aa15.9■□□□□ 0.14
PTCH1-226ENST00000553011 TRMT1LQ7Z2T5 733 aaKnown RBP15.9■□□□□ 0.14
PTCH1-226ENST00000553011 FERMT3Q86UX7 667 aa15.9■□□□□ 0.14
PTCH1-226ENST00000553011 SERINC5Q86VE9 423 aa15.9■□□□□ 0.14
PTCH1-226ENST00000553011 SLFN12Q8IYM2 578 aa15.9■□□□□ 0.14
PTCH1-226ENST00000553011 SPRYD3Q8NCJ5 442 aa15.9■□□□□ 0.14
PTCH1-226ENST00000553011 RDM1Q8NG50 284 aa15.9■□□□□ 0.14
PTCH1-226ENST00000553011 ATP8B4Q8TF62 1192 aa15.9■□□□□ 0.14
PTCH1-226ENST00000553011 TRAPPC12Q8WVT3 735 aa15.9■□□□□ 0.14
PTCH1-226ENST00000553011 ZBTB10Q96DT7 871 aa15.9■□□□□ 0.14
PTCH1-226ENST00000553011 PRO3102Q9H379 93 aa15.9■□□□□ 0.14
PTCH1-226ENST00000553011 COLQQ9Y215 455 aaPredicted RBP15.9■□□□□ 0.14
PTCH1-226ENST00000553011 PCDHB6Q9Y5E3 794 aa15.9■□□□□ 0.14
PTCH1-226ENST00000553011 NRCAMQ92823 1304 aa15.9■□□□□ 0.14
PTCH1-226ENST00000553011 HSP90AA1P07900 732 aaKnown RBP15.89■□□□□ 0.13
PTCH1-226ENST00000553011 GNAT1P11488 350 aa15.89■□□□□ 0.13
PTCH1-226ENST00000553011 CSF2RAP15509 400 aa15.89■□□□□ 0.13
PTCH1-226ENST00000553011 FPGSQ05932 587 aa15.89■□□□□ 0.13
PTCH1-226ENST00000553011 ORC2Q13416 577 aaPredicted RBP15.89■□□□□ 0.13
PTCH1-226ENST00000553011 TRIM71Q2Q1W2 868 aaKnown RBP15.89■□□□□ 0.13
PTCH1-226ENST00000553011 MARCH8Q5T0T0 291 aa15.89■□□□□ 0.13
PTCH1-226ENST00000553011 NCAPH2Q6IBW4 605 aa15.89■□□□□ 0.13
PTCH1-226ENST00000553011 CKAP2LQ8IYA6 745 aa15.89■□□□□ 0.13
PTCH1-226ENST00000553011 SCLYQ96I15 445 aa15.89■□□□□ 0.13
PTCH1-226ENST00000553011 UBE2OQ9C0C9 1292 aaKnown RBP15.89■□□□□ 0.13
PTCH1-226ENST00000553011 TTC12Q9H892 705 aaPredicted RBP15.89■□□□□ 0.13
PTCH1-226ENST00000553011 PCDHA12Q9UN75 941 aa15.89■□□□□ 0.13
PTCH1-226ENST00000553011 SIP14410 1827 aa15.89■□□□□ 0.13
PTCH1-226ENST00000553011 RBAK-RBAKDNI3L0D1 243 aa15.88■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms