RNA–Protein interactions for RNA: ENST00000550611.1

LIMA1-206, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-206ENST00000550611 CNTROBQ8N137 903 aa4.92□□□□□ -1.62
LIMA1-206ENST00000550611 GZF1Q9H116 711 aaPredicted RBP4.92□□□□□ -1.62
LIMA1-206ENST00000550611 TAF1DQ9H5J8 278 aaPredicted RBP4.92□□□□□ -1.62
LIMA1-206ENST00000550611 PRR13Q9NZ81 148 aa4.92□□□□□ -1.62
LIMA1-206ENST00000550611 SRP68Q9UHB9 627 aaKnown RBP4.92□□□□□ -1.62
LIMA1-206ENST00000550611 MINPP1Q9UNW1 487 aa4.92□□□□□ -1.62
LIMA1-206ENST00000550611 HCFC2Q9Y5Z7 792 aa4.92□□□□□ -1.62
LIMA1-206ENST00000550611 C5P01031 1676 aa4.92□□□□□ -1.62
LIMA1-206ENST00000550611 WASHC2AQ641Q2 1341 aa4.92□□□□□ -1.62
LIMA1-206ENST00000550611 BRCA1P38398 1863 aaKnown RBP4.92□□□□□ -1.62
LIMA1-206ENST00000550611 C4BP0C0L5 1744 aa4.92□□□□□ -1.62
LIMA1-206ENST00000550611 FLT4P35916 1363 aa4.91□□□□□ -1.62
LIMA1-206ENST00000550611 KDRP35968 1356 aa4.91□□□□□ -1.62
LIMA1-206ENST00000550611 LTN1O94822 1766 aa4.91□□□□□ -1.62
LIMA1-206ENST00000550611 SMG6Q86US8 1419 aaKnown RBP4.91□□□□□ -1.62
LIMA1-206ENST00000550611 KIF13BQ9NQT8 1826 aa4.91□□□□□ -1.62
LIMA1-206ENST00000550611 BRCA2P51587 3418 aa4.91□□□□□ -1.62
LIMA1-206ENST00000550611 A0A1W2PQ27 194 aa4.91□□□□□ -1.62
LIMA1-206ENST00000550611 A0A1W2PQ64 194 aa4.91□□□□□ -1.62
LIMA1-206ENST00000550611 A0A1W2PQC6 194 aa4.91□□□□□ -1.62
LIMA1-206ENST00000550611 A0A1W2PQD8 194 aa4.91□□□□□ -1.62
LIMA1-206ENST00000550611 ASGR2P07307 311 aa4.91□□□□□ -1.62
LIMA1-206ENST00000550611 TM4SF1P30408 202 aa4.91□□□□□ -1.62
LIMA1-206ENST00000550611 SARSP49591 514 aaKnown RBP4.91□□□□□ -1.62
LIMA1-206ENST00000550611 PRR5P85299 388 aa4.91□□□□□ -1.62
LIMA1-206ENST00000550611 DDR1Q08345 913 aa4.91□□□□□ -1.62
LIMA1-206ENST00000550611 MPP2Q14168 576 aa4.91□□□□□ -1.62
LIMA1-206ENST00000550611 TBC1D10BQ4KMP7 808 aaPredicted RBP4.91□□□□□ -1.62
LIMA1-206ENST00000550611 CST9Q5W186 159 aa4.91□□□□□ -1.62
LIMA1-206ENST00000550611 HLA-DQA1Q5Y7H0 255 aa4.91□□□□□ -1.62
LIMA1-206ENST00000550611 REC114Q7Z4M0 266 aa4.91□□□□□ -1.62
LIMA1-206ENST00000550611 IFNL2Q8IZJ0 200 aa4.91□□□□□ -1.62
LIMA1-206ENST00000550611 GCC1Q96CN9 775 aa4.91□□□□□ -1.62
LIMA1-206ENST00000550611 RHOVQ96L33 236 aa4.91□□□□□ -1.62
LIMA1-206ENST00000550611 PDLIM7Q9NR12 457 aa4.91□□□□□ -1.62
LIMA1-206ENST00000550611 AP5S1Q9NUS5 200 aa4.91□□□□□ -1.62
LIMA1-206ENST00000550611 TMOD3Q9NYL9 352 aa4.91□□□□□ -1.62
LIMA1-206ENST00000550611 GMIPQ9P107 970 aa4.91□□□□□ -1.62
LIMA1-206ENST00000550611 NTMQ9P121 344 aa4.91□□□□□ -1.62
LIMA1-206ENST00000550611 PLA2G2DQ9UNK4 145 aa4.91□□□□□ -1.62
LIMA1-206ENST00000550611 TAF1LQ8IZX4 1826 aa4.9□□□□□ -1.62
LIMA1-206ENST00000550611 ARFGEF1Q9Y6D6 1849 aa4.9□□□□□ -1.62
LIMA1-206ENST00000550611 KDM6AO15550 1401 aaPredicted RBP4.9□□□□□ -1.62
LIMA1-206ENST00000550611 UBR3Q6ZT12 1888 aa4.9□□□□□ -1.62
LIMA1-206ENST00000550611 ERVV-2B6SEH9 535 aa4.9□□□□□ -1.63
LIMA1-206ENST00000550611 PATL2C9JE40 543 aaKnown RBP4.9□□□□□ -1.63
LIMA1-206ENST00000550611 TRAF5O00463 557 aa4.9□□□□□ -1.63
LIMA1-206ENST00000550611 CCNFP41002 786 aa4.9□□□□□ -1.63
LIMA1-206ENST00000550611 KCNA1Q09470 495 aa4.9□□□□□ -1.63
LIMA1-206ENST00000550611 RTP2Q5QGT7 225 aa4.9□□□□□ -1.63
LIMA1-206ENST00000550611 CDCP2Q5VXM1 449 aa4.9□□□□□ -1.63
LIMA1-206ENST00000550611 SSBP3Q9BWW4 388 aaPredicted RBP4.9□□□□□ -1.63
LIMA1-206ENST00000550611 ANTXR1Q9H6X2 564 aa4.9□□□□□ -1.63
LIMA1-206ENST00000550611 POLKQ9UBT6 870 aa4.9□□□□□ -1.63
LIMA1-206ENST00000550611 TSC22D4Q9Y3Q8 395 aa4.9□□□□□ -1.63
LIMA1-206ENST00000550611 IVNS1ABPQ9Y6Y0 642 aa4.9□□□□□ -1.63
LIMA1-206ENST00000550611 UNC80Q8N2C7 3258 aa4.9□□□□□ -1.63
LIMA1-206ENST00000550611 MAP2P11137 1827 aaKnown RBP4.9□□□□□ -1.63
LIMA1-206ENST00000550611 F8W031 263 aaPredicted RBP4.89□□□□□ -1.63
LIMA1-206ENST00000550611 FZD7O75084 574 aa4.89□□□□□ -1.63
LIMA1-206ENST00000550611 CLEC3AO75596 197 aa4.89□□□□□ -1.63
LIMA1-206ENST00000550611 RFC4P35249 363 aa4.89□□□□□ -1.63
LIMA1-206ENST00000550611 CORO7P57737 925 aa4.89□□□□□ -1.63
LIMA1-206ENST00000550611 BICRALQ6AI39 1079 aa4.89□□□□□ -1.63
LIMA1-206ENST00000550611 USP51Q70EK9 711 aa4.89□□□□□ -1.63
LIMA1-206ENST00000550611 SPRED1Q7Z699 444 aa4.89□□□□□ -1.63
LIMA1-206ENST00000550611 ZFPM1Q8IX07 1006 aa4.89□□□□□ -1.63
LIMA1-206ENST00000550611 CHST13Q8NET6 341 aa4.89□□□□□ -1.63
LIMA1-206ENST00000550611 DDX21Q9NR30 783 aaKnown RBP eCLIP4.89□□□□□ -1.63
LIMA1-206ENST00000550611 VCANP13611 3396 aa4.88□□□□□ -1.63
LIMA1-206ENST00000550611 A0A1W2PQJ5 194 aa4.88□□□□□ -1.63
LIMA1-206ENST00000550611 POLRMTO00411 1230 aaKnown RBP4.88□□□□□ -1.63
LIMA1-206ENST00000550611 ATE1O95260 518 aa4.88□□□□□ -1.63
LIMA1-206ENST00000550611 GSNP06396 782 aa4.88□□□□□ -1.63
LIMA1-206ENST00000550611 MAP2K2P36507 400 aa4.88□□□□□ -1.63
LIMA1-206ENST00000550611 MC3RP41968 323 aa4.88□□□□□ -1.63
LIMA1-206ENST00000550611 CRKLP46109 303 aaKnown RBP4.88□□□□□ -1.63
LIMA1-206ENST00000550611 EIF4A2Q14240 407 aaKnown RBP4.88□□□□□ -1.63
LIMA1-206ENST00000550611 CRB2Q5IJ48 1285 aa4.88□□□□□ -1.63
LIMA1-206ENST00000550611 TMCO4Q5TGY1 634 aa4.88□□□□□ -1.63
LIMA1-206ENST00000550611 CRTC3Q6UUV7 619 aa4.88□□□□□ -1.63
LIMA1-206ENST00000550611 CYP2R1Q6VVX0 501 aa4.88□□□□□ -1.63
LIMA1-206ENST00000550611 JAMLQ86YT9 394 aa4.88□□□□□ -1.63
LIMA1-206ENST00000550611 TTLL6Q8N841 843 aa4.88□□□□□ -1.63
LIMA1-206ENST00000550611 SH3RF3Q8TEJ3 882 aaPredicted RBP4.88□□□□□ -1.63
LIMA1-206ENST00000550611 CPA5Q8WXQ8 436 aa4.88□□□□□ -1.63
LIMA1-206ENST00000550611 TMEM74Q96NL1 305 aa4.88□□□□□ -1.63
LIMA1-206ENST00000550611 DUSP9Q99956 384 aaKnown RBP4.88□□□□□ -1.63
LIMA1-206ENST00000550611 CNNM2Q9H8M5 875 aa4.88□□□□□ -1.63
LIMA1-206ENST00000550611 SPATA6Q9NWH7 488 aaPredicted RBP4.88□□□□□ -1.63
LIMA1-206ENST00000550611 GFOD1Q9NXC2 390 aa4.88□□□□□ -1.63
LIMA1-206ENST00000550611 PCDHB12Q9Y5F1 795 aa4.88□□□□□ -1.63
LIMA1-206ENST00000550611 USP42Q9H9J4 1324 aaKnown RBP4.88□□□□□ -1.63
LIMA1-206ENST00000550611 RGPD2P0DJD1 1756 aa4.88□□□□□ -1.63
LIMA1-206ENST00000550611 LTBP1Q14766 1721 aa4.87□□□□□ -1.63
LIMA1-206ENST00000550611 CENPFP49454 3210 aa4.87□□□□□ -1.63
LIMA1-206ENST00000550611 RANBP2P49792 3224 aaKnown RBP4.87□□□□□ -1.63
LIMA1-206ENST00000550611 MEIS1O00470 390 aa4.87□□□□□ -1.63
LIMA1-206ENST00000550611 HSP90AB1P08238 724 aaKnown RBP4.87□□□□□ -1.63
LIMA1-206ENST00000550611 POLR2BP30876 1174 aaKnown RBP4.87□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms