RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 A0A1W2PQC6 194 aa17.07■□□□□ 0.32
CUX1-211ENST00000546411 ATP2A1O14983 1001 aa17.07■□□□□ 0.32
CUX1-211ENST00000546411 SRGNP10124 158 aa17.07■□□□□ 0.32
CUX1-211ENST00000546411 GCLMP48507 274 aa17.07■□□□□ 0.32
CUX1-211ENST00000546411 ADCY1Q08828 1119 aa17.07■□□□□ 0.32
CUX1-211ENST00000546411 ZNF746Q6NUN9 644 aaPredicted RBP17.07■□□□□ 0.32
CUX1-211ENST00000546411 METTL13Q8N6R0 699 aa17.07■□□□□ 0.32
CUX1-211ENST00000546411 RIN2Q8WYP3 895 aaPredicted RBP17.07■□□□□ 0.32
CUX1-211ENST00000546411 ATF5Q9Y2D1 282 aaPredicted RBP17.07■□□□□ 0.32
CUX1-211ENST00000546411 BZW2Q9Y6E2 419 aaKnown RBP17.07■□□□□ 0.32
CUX1-211ENST00000546411 SNX1Q13596 522 aa17.07■□□□□ 0.32
CUX1-211ENST00000546411 DENND2CQ68D51 928 aa17.07■□□□□ 0.32
CUX1-211ENST00000546411 SLC30A10Q6XR72 485 aa17.07■□□□□ 0.32
CUX1-211ENST00000546411 GOLPH3Q9H4A6 298 aa17.07■□□□□ 0.32
CUX1-211ENST00000546411 TAL1P17542 331 aaPredicted RBP17.06■□□□□ 0.32
CUX1-211ENST00000546411 EPHB4P54760 987 aa17.06■□□□□ 0.32
CUX1-211ENST00000546411 KNOP1Q1ED39 458 aaKnown RBP17.06■□□□□ 0.32
CUX1-211ENST00000546411 LIN9Q5TKA1 542 aa17.06■□□□□ 0.32
CUX1-211ENST00000546411 BARGINQ6ZT62 677 aa17.06■□□□□ 0.32
CUX1-211ENST00000546411 MCF2L2Q86YR7 1114 aa17.06■□□□□ 0.32
CUX1-211ENST00000546411 GOLGA5Q8TBA6 731 aa17.06■□□□□ 0.32
CUX1-211ENST00000546411 MS4A14Q96JA4 679 aa17.06■□□□□ 0.32
CUX1-211ENST00000546411 OSBPL9Q96SU4 736 aa17.06■□□□□ 0.32
CUX1-211ENST00000546411 AZI2Q9H6S1 392 aa17.06■□□□□ 0.32
CUX1-211ENST00000546411 RAVER2Q9HCJ3 691 aaKnown RBP17.06■□□□□ 0.32
CUX1-211ENST00000546411 C1orf112Q9NSG2 853 aa17.06■□□□□ 0.32
CUX1-211ENST00000546411 SAMD15Q9P1V8 674 aa17.06■□□□□ 0.32
CUX1-211ENST00000546411 RGPD8O14715 1765 aaPredicted RBP17.06■□□□□ 0.32
CUX1-211ENST00000546411 PALM3A6NDB9 673 aaPredicted RBP17.06■□□□□ 0.32
CUX1-211ENST00000546411 GAP43P17677 238 aa17.06■□□□□ 0.32
CUX1-211ENST00000546411 GIMAP7Q8NHV1 300 aa17.06■□□□□ 0.32
CUX1-211ENST00000546411 RAB17Q9H0T7 212 aa17.06■□□□□ 0.32
CUX1-211ENST00000546411 DNAJC12Q9UKB3 198 aa17.06■□□□□ 0.32
CUX1-211ENST00000546411 EIF3CLB5ME19 914 aaKnown RBP17.06■□□□□ 0.32
CUX1-211ENST00000546411 PGRMC1O00264 195 aaKnown RBP17.06■□□□□ 0.32
CUX1-211ENST00000546411 ATF7P17544 494 aaPredicted RBP17.06■□□□□ 0.32
CUX1-211ENST00000546411 POLGP54098 1239 aaPredicted RBP17.06■□□□□ 0.32
CUX1-211ENST00000546411 AP3B2Q13367 1082 aa17.06■□□□□ 0.32
CUX1-211ENST00000546411 EIF3CQ99613 913 aaKnown RBP17.06■□□□□ 0.32
CUX1-211ENST00000546411 MXI1P50539 228 aa17.05■□□□□ 0.32
CUX1-211ENST00000546411 KAZNQ674X7 775 aa17.05■□□□□ 0.32
CUX1-211ENST00000546411 DCAF4Q8WV16 495 aa17.05■□□□□ 0.32
CUX1-211ENST00000546411 IWS1Q96ST2 819 aa17.05■□□□□ 0.32
CUX1-211ENST00000546411 STIM2Q9P246 746 aa17.05■□□□□ 0.32
CUX1-211ENST00000546411 CNTNAP4Q9C0A0 1308 aa17.05■□□□□ 0.32
CUX1-211ENST00000546411 IFNAR2P48551 515 aa17.05■□□□□ 0.32
CUX1-211ENST00000546411 PDE6CP51160 858 aa17.05■□□□□ 0.32
CUX1-211ENST00000546411 CCDC91Q7Z6B0 441 aa17.05■□□□□ 0.32
CUX1-211ENST00000546411 TRAF3IP1Q8TDR0 691 aaPredicted RBP17.05■□□□□ 0.32
CUX1-211ENST00000546411 ZNF653Q96CK0 615 aa17.05■□□□□ 0.32
CUX1-211ENST00000546411 NSRP1Q9H0G5 558 aaKnown RBP17.05■□□□□ 0.32
CUX1-211ENST00000546411 CEP72Q9P209 647 aa17.05■□□□□ 0.32
CUX1-211ENST00000546411 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.05■□□□□ 0.322e-7■□□□□ 10.7
CUX1-211ENST00000546411 SLCO1A2P46721 670 aa17.05■□□□□ 0.32
CUX1-211ENST00000546411 SLC10A5Q5PT55 438 aa17.05■□□□□ 0.32
CUX1-211ENST00000546411 IQCGQ9H095 443 aaKnown RBP17.05■□□□□ 0.32
CUX1-211ENST00000546411 STMN4Q9H169 189 aaPredicted RBP17.05■□□□□ 0.32
CUX1-211ENST00000546411 PLEKHG2Q9H7P9 1386 aa17.04■□□□□ 0.32
CUX1-211ENST00000546411 VGLL3A8MV65 326 aa17.04■□□□□ 0.32
CUX1-211ENST00000546411 RGS16O15492 202 aaPredicted RBP17.04■□□□□ 0.32
CUX1-211ENST00000546411 CYTH3O43739 400 aa17.04■□□□□ 0.32
CUX1-211ENST00000546411 DKC1O60832 514 aaKnown RBP eCLIP17.04■□□□□ 0.321e-7■■■■■ 38.7
CUX1-211ENST00000546411 ZNF18P17022 549 aa17.04■□□□□ 0.32
CUX1-211ENST00000546411 TMOD1P28289 359 aa17.04■□□□□ 0.32
CUX1-211ENST00000546411 GGCXP38435 758 aa17.04■□□□□ 0.32
CUX1-211ENST00000546411 IRX3P78415 501 aaPredicted RBP17.04■□□□□ 0.32
CUX1-211ENST00000546411 ZNF211Q13398 564 aaPredicted RBP17.04■□□□□ 0.32
CUX1-211ENST00000546411 GNPTABQ3T906 1256 aa17.04■□□□□ 0.32
CUX1-211ENST00000546411 MTERF2Q49AM1 385 aa17.04■□□□□ 0.32
CUX1-211ENST00000546411 PDXDC2PQ6P474 469 aa17.04■□□□□ 0.32
CUX1-211ENST00000546411 C7orf25Q9BPX7 421 aa17.04■□□□□ 0.32
CUX1-211ENST00000546411 EIF2AK1Q9BQI3 630 aaKnown RBP17.04■□□□□ 0.32
CUX1-211ENST00000546411 KMT5AQ9NQR1 393 aa17.04■□□□□ 0.32
CUX1-211ENST00000546411 DNAJC17Q9NVM6 304 aaKnown RBP17.04■□□□□ 0.32
CUX1-211ENST00000546411 EHD2Q9NZN4 543 aa17.04■□□□□ 0.32
CUX1-211ENST00000546411 A0A0U1RQJ8 604 aa17.04■□□□□ 0.32
CUX1-211ENST00000546411 LMNB1P20700 586 aa17.04■□□□□ 0.32
CUX1-211ENST00000546411 SEPT14Q6ZU15 432 aa17.04■□□□□ 0.32
CUX1-211ENST00000546411 B4GALNT4Q76KP1 1039 aa17.04■□□□□ 0.32
CUX1-211ENST00000546411 TTLL6Q8N841 843 aa17.04■□□□□ 0.32
CUX1-211ENST00000546411 DDX47Q9H0S4 455 aaKnown RBP17.04■□□□□ 0.32
CUX1-211ENST00000546411 L2HGDHQ9H9P8 463 aa17.04■□□□□ 0.32
CUX1-211ENST00000546411 PPP4CP60510 307 aa17.04■□□□□ 0.32
CUX1-211ENST00000546411 GLYCTKQ8IVS8 523 aa17.04■□□□□ 0.32
CUX1-211ENST00000546411 LRRC1Q9BTT6 524 aa17.04■□□□□ 0.32
CUX1-211ENST00000546411 DCCP43146 1447 aa17.04■□□□□ 0.32
CUX1-211ENST00000546411 FGGP02679 453 aa17.04■□□□□ 0.32
CUX1-211ENST00000546411 GYS1P13807 737 aa17.04■□□□□ 0.32
CUX1-211ENST00000546411 NF2P35240 595 aa17.04■□□□□ 0.32
CUX1-211ENST00000546411 DHX9Q08211 1270 aaKnown RBP17.04■□□□□ 0.32
CUX1-211ENST00000546411 PAXIP1Q6ZW49 1069 aaPredicted RBP17.04■□□□□ 0.32
CUX1-211ENST00000546411 PROM2Q8N271 834 aa17.04■□□□□ 0.32
CUX1-211ENST00000546411 NT5C1BQ96P26 610 aa17.04■□□□□ 0.32
CUX1-211ENST00000546411 RTFDC1Q9BY42 306 aaPredicted RBP17.04■□□□□ 0.32
CUX1-211ENST00000546411 LACRTQ9GZZ8 138 aa17.04■□□□□ 0.32
CUX1-211ENST00000546411 MKRN1Q9UHC7 482 aaKnown RBP17.04■□□□□ 0.32
CUX1-211ENST00000546411 IPO5O00410 1097 aaKnown RBP17.03■□□□□ 0.32
CUX1-211ENST00000546411 PDIA5Q14554 519 aa17.03■□□□□ 0.32
CUX1-211ENST00000546411 NCAPG2Q86XI2 1143 aa17.03■□□□□ 0.32
CUX1-211ENST00000546411 PPP1R14CQ8TAE6 165 aa17.03■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms