RNA–Protein interactions for RNA: ENST00000545440.5

SNHG1-223, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2 BASIC

Gene SNHG1, Length 754 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-223ENST00000545440 TRAF1Q13077 416 aa8.9□□□□□ -0.98
SNHG1-223ENST00000545440 NECTIN1Q15223 517 aa8.9□□□□□ -0.98
SNHG1-223ENST00000545440 FSCN1Q16658 493 aaKnown RBP8.9□□□□□ -0.98
SNHG1-223ENST00000545440 DUSP28Q4G0W2 176 aa8.9□□□□□ -0.98
SNHG1-223ENST00000545440 TMEM67Q5HYA8 995 aa8.9□□□□□ -0.98
SNHG1-223ENST00000545440 CREB3L3Q68CJ9 461 aa8.9□□□□□ -0.98
SNHG1-223ENST00000545440 NOL8Q76FK4 1167 aaKnown RBP8.9□□□□□ -0.98
SNHG1-223ENST00000545440 EEPD1Q7L9B9 569 aa8.9□□□□□ -0.98
SNHG1-223ENST00000545440 CATIPQ7Z7H3 387 aa8.9□□□□□ -0.98
SNHG1-223ENST00000545440 SKAP1Q86WV1 359 aa8.9□□□□□ -0.98
SNHG1-223ENST00000545440 IGDCC4Q8TDY8 1250 aa8.9□□□□□ -0.98
SNHG1-223ENST00000545440 RHBDD1Q8TEB9 315 aa8.9□□□□□ -0.98
SNHG1-223ENST00000545440 TMEM87BQ96K49 555 aa8.9□□□□□ -0.98
SNHG1-223ENST00000545440 MAP3K14Q99558 947 aa8.9□□□□□ -0.98
SNHG1-223ENST00000545440 UBE2OQ9C0C9 1292 aaKnown RBP8.9□□□□□ -0.98
SNHG1-223ENST00000545440 RIOX1Q9H6W3 641 aa8.9□□□□□ -0.98
SNHG1-223ENST00000545440 LY9Q9HBG7 655 aa8.9□□□□□ -0.98
SNHG1-223ENST00000545440 SENP2Q9HC62 589 aa8.9□□□□□ -0.98
SNHG1-223ENST00000545440 PRDM5Q9NQX1 630 aaPredicted RBP8.9□□□□□ -0.98
SNHG1-223ENST00000545440 MRPL11Q9Y3B7 192 aaKnown RBP8.9□□□□□ -0.98
SNHG1-223ENST00000545440 DDX49Q9Y6V7 483 aaKnown RBP8.9□□□□□ -0.98
SNHG1-223ENST00000545440 A0A0U1RQG5 324 aaPredicted RBP8.89□□□□□ -0.99
SNHG1-223ENST00000545440 SH2B2O14492 632 aaPredicted RBP8.89□□□□□ -0.99
SNHG1-223ENST00000545440 KIAA0355O15063 1070 aa8.89□□□□□ -0.99
SNHG1-223ENST00000545440 AXIN1O15169 862 aa8.89□□□□□ -0.99
SNHG1-223ENST00000545440 NKRFO15226 690 aaKnown RBP eCLIP8.89□□□□□ -0.99
SNHG1-223ENST00000545440 PRC1O43663 620 aa8.89□□□□□ -0.99
SNHG1-223ENST00000545440 ZEB2O60315 1214 aa8.89□□□□□ -0.99
SNHG1-223ENST00000545440 PQBP1O60828 265 aaKnown RBP8.89□□□□□ -0.99
SNHG1-223ENST00000545440 CABYRO75952 493 aa8.89□□□□□ -0.99
SNHG1-223ENST00000545440 LIFRP42702 1097 aa8.89□□□□□ -0.99
SNHG1-223ENST00000545440 RNF144AP50876 292 aaPredicted RBP8.89□□□□□ -0.99
SNHG1-223ENST00000545440 HSD17B4P51659 736 aa8.89□□□□□ -0.99
SNHG1-223ENST00000545440 PPP2R5BQ15173 497 aa8.89□□□□□ -0.99
SNHG1-223ENST00000545440 LRIT3Q3SXY7 679 aa8.89□□□□□ -0.99
SNHG1-223ENST00000545440 C6orf118Q5T5N4 469 aa8.89□□□□□ -0.99
SNHG1-223ENST00000545440 MRPL14Q6P1L8 145 aaKnown RBP8.89□□□□□ -0.99
SNHG1-223ENST00000545440 SND1Q7KZF4 910 aaKnown RBP eCLIP8.89□□□□□ -0.99
SNHG1-223ENST00000545440 CHST3Q7LGC8 479 aa8.89□□□□□ -0.99
SNHG1-223ENST00000545440 ZNF654Q8IZM8 581 aa8.89□□□□□ -0.99
SNHG1-223ENST00000545440 SAMD3Q8N6K7 520 aa8.89□□□□□ -0.99
SNHG1-223ENST00000545440 CTCFLQ8NI51 663 aaPredicted RBP8.89□□□□□ -0.99
SNHG1-223ENST00000545440 SYTL5Q8TDW5 730 aaPredicted RBP8.89□□□□□ -0.99
SNHG1-223ENST00000545440 NSUN6Q8TEA1 469 aaKnown RBP8.89□□□□□ -0.99
SNHG1-223ENST00000545440 SCFD2Q8WU76 684 aa8.89□□□□□ -0.99
SNHG1-223ENST00000545440 SEZ6LQ9BYH1 1024 aa8.89□□□□□ -0.99
SNHG1-223ENST00000545440 WDR11Q9BZH6 1224 aa8.89□□□□□ -0.99
SNHG1-223ENST00000545440 AP5M1Q9H0R1 490 aa8.89□□□□□ -0.99
SNHG1-223ENST00000545440 PDGFCQ9NRA1 345 aa8.89□□□□□ -0.99
SNHG1-223ENST00000545440 MAP3K20Q9NYL2 800 aaKnown RBP8.89□□□□□ -0.99
SNHG1-223ENST00000545440 COL20A1Q9P218 1284 aa8.89□□□□□ -0.99
SNHG1-223ENST00000545440 EGFL7Q9UHF1 273 aa8.89□□□□□ -0.99
SNHG1-223ENST00000545440 MYH9P35579 1960 aaKnown RBP8.88□□□□□ -0.99
SNHG1-223ENST00000545440 PTPRSQ13332 1948 aa8.88□□□□□ -0.99
SNHG1-223ENST00000545440 MYO9BQ13459 2157 aa8.88□□□□□ -0.99
SNHG1-223ENST00000545440 DCDC2CA8MYV0 355 aa8.88□□□□□ -0.99
SNHG1-223ENST00000545440 OPLAHO14841 1288 aa8.88□□□□□ -0.99
SNHG1-223ENST00000545440 SPINT1O43278 529 aa8.88□□□□□ -0.99
SNHG1-223ENST00000545440 CYTH3O43739 400 aa8.88□□□□□ -0.99
SNHG1-223ENST00000545440 PPP1R11O60927 126 aaPredicted RBP8.88□□□□□ -0.99
SNHG1-223ENST00000545440 NEFLP07196 543 aa8.88□□□□□ -0.99
SNHG1-223ENST00000545440 SMARCA1P28370 1054 aa8.88□□□□□ -0.99
SNHG1-223ENST00000545440 KIF5BP33176 963 aa8.88□□□□□ -0.99
SNHG1-223ENST00000545440 CPT1AP50416 773 aa8.88□□□□□ -0.99
SNHG1-223ENST00000545440 EPHA4P54764 986 aa8.88□□□□□ -0.99
SNHG1-223ENST00000545440 BEX3Q00994 111 aa8.88□□□□□ -0.99
SNHG1-223ENST00000545440 FOXK2Q01167 660 aa8.88□□□□□ -0.99
SNHG1-223ENST00000545440 TTLL4Q14679 1199 aa8.88□□□□□ -0.99
SNHG1-223ENST00000545440 HIF1AQ16665 826 aa8.88□□□□□ -0.99
SNHG1-223ENST00000545440 SLC35G1Q2M3R5 365 aa8.88□□□□□ -0.99
SNHG1-223ENST00000545440 PHLDB3Q6NSJ2 640 aa8.88□□□□□ -0.99
SNHG1-223ENST00000545440 CXCL17Q6UXB2 119 aa8.88□□□□□ -0.99
SNHG1-223ENST00000545440 HOMER1Q86YM7 354 aa8.88□□□□□ -0.99
SNHG1-223ENST00000545440 GLYCTKQ8IVS8 523 aa8.88□□□□□ -0.99
SNHG1-223ENST00000545440 FAM126BQ8IXS8 530 aa8.88□□□□□ -0.99
SNHG1-223ENST00000545440 TMTC2Q8N394 836 aa8.88□□□□□ -0.99
SNHG1-223ENST00000545440 IWS1Q96ST2 819 aa8.88□□□□□ -0.99
SNHG1-223ENST00000545440 INSM2Q96T92 566 aaPredicted RBP8.88□□□□□ -0.99
SNHG1-223ENST00000545440 RMDN3Q96TC7 470 aa8.88□□□□□ -0.99
SNHG1-223ENST00000545440 LZTS2Q9BRK4 669 aa8.88□□□□□ -0.99
SNHG1-223ENST00000545440 SPZ1Q9BXG8 430 aa8.88□□□□□ -0.99
SNHG1-223ENST00000545440 VAT1LQ9HCJ6 419 aa8.88□□□□□ -0.99
SNHG1-223ENST00000545440 TBX21Q9UL17 535 aa8.88□□□□□ -0.99
SNHG1-223ENST00000545440 PCDHA1Q9Y5I3 950 aa8.88□□□□□ -0.99
SNHG1-223ENST00000545440 TET1Q8NFU7 2136 aa8.87□□□□□ -0.99
SNHG1-223ENST00000545440 PNMA6FA0A0J9YX94 578 aa8.87□□□□□ -0.99
SNHG1-223ENST00000545440 TRIM43BA6NCK2 446 aa8.87□□□□□ -0.99
SNHG1-223ENST00000545440 CCDC69A6NI79 296 aa8.87□□□□□ -0.99
SNHG1-223ENST00000545440 ARVCFO00192 962 aa8.87□□□□□ -0.99
SNHG1-223ENST00000545440 SOX1O00570 391 aaPredicted RBP8.87□□□□□ -0.99
SNHG1-223ENST00000545440 DYNC1LI2O43237 492 aaPredicted RBP8.87□□□□□ -0.99
SNHG1-223ENST00000545440 CFBP00751 764 aa8.87□□□□□ -0.99
SNHG1-223ENST00000545440 CALM1P0DP23 149 aa8.87□□□□□ -0.99
SNHG1-223ENST00000545440 CALM2P0DP24 149 aa8.87□□□□□ -0.99
SNHG1-223ENST00000545440 CALM3P0DP25 149 aa8.87□□□□□ -0.99
SNHG1-223ENST00000545440 PTGS1P23219 599 aa8.87□□□□□ -0.99
SNHG1-223ENST00000545440 GNAQP50148 359 aa8.87□□□□□ -0.99
SNHG1-223ENST00000545440 CDK7P50613 346 aa8.87□□□□□ -0.99
SNHG1-223ENST00000545440 FAAP100Q0VG06 881 aa8.87□□□□□ -0.99
SNHG1-223ENST00000545440 TEAD4Q15561 434 aa8.87□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms