RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 SNX12Q9UMY4 172 aa19.86■□□□□ 0.77
VIM-209ENST00000544301 CNTNAP1P78357 1384 aa19.86■□□□□ 0.77
VIM-209ENST00000544301 RGPD3A6NKT7 1758 aaPredicted RBP19.86■□□□□ 0.77
VIM-209ENST00000544301 RGPD4Q7Z3J3 1758 aa19.86■□□□□ 0.77
VIM-209ENST00000544301 RSPH10B2B2RC85 870 aa19.85■□□□□ 0.77
VIM-209ENST00000544301 RBAK-RBAKDNI3L0D1 243 aa19.85■□□□□ 0.77
VIM-209ENST00000544301 PDE2AO00408 941 aaPredicted RBP19.85■□□□□ 0.77
VIM-209ENST00000544301 CFBP00751 764 aa19.85■□□□□ 0.77
VIM-209ENST00000544301 SERPING1P05155 500 aa19.85■□□□□ 0.77
VIM-209ENST00000544301 RSPH10BP0C881 870 aa19.85■□□□□ 0.77
VIM-209ENST00000544301 MYBP10242 640 aa19.85■□□□□ 0.77
VIM-209ENST00000544301 APBA1Q02410 837 aa19.85■□□□□ 0.77
VIM-209ENST00000544301 KCNH2Q12809 1159 aa19.85■□□□□ 0.77
VIM-209ENST00000544301 DLGAP5Q15398 846 aa19.85■□□□□ 0.77
VIM-209ENST00000544301 SLC9C1Q4G0N8 1177 aa19.85■□□□□ 0.77
VIM-209ENST00000544301 TDRD12Q587J7 1177 aaKnown RBP19.85■□□□□ 0.77
VIM-209ENST00000544301 ATAD5Q96QE3 1844 aa19.85■□□□□ 0.77
VIM-209ENST00000544301 VIL1P09327 827 aaKnown RBP19.85■□□□□ 0.77
VIM-209ENST00000544301 CCDC174Q6PII3 467 aa19.85■□□□□ 0.77
VIM-209ENST00000544301 CAGE1Q8TC20 777 aa19.85■□□□□ 0.77
VIM-209ENST00000544301 RANBP17Q9H2T7 1088 aaKnown RBP19.85■□□□□ 0.77
VIM-209ENST00000544301 SUGCTQ9HAC7 445 aa19.85■□□□□ 0.77
VIM-209ENST00000544301 ZHX1Q9UKY1 873 aaPredicted RBP19.85■□□□□ 0.77
VIM-209ENST00000544301 RABGAP1Q9Y3P9 1069 aa19.85■□□□□ 0.77
VIM-209ENST00000544301 GCOM1H8Y6P7 765 aaPredicted RBP19.84■□□□□ 0.77
VIM-209ENST00000544301 PDXKO00764 312 aa19.84■□□□□ 0.77
VIM-209ENST00000544301 PRPF6O94906 941 aaKnown RBP19.84■□□□□ 0.77
VIM-209ENST00000544301 POLR2MP0CAP2 368 aa19.84■□□□□ 0.77
VIM-209ENST00000544301 OTOP1Q7RTM1 612 aa19.84■□□□□ 0.77
VIM-209ENST00000544301 FRMD5Q7Z6J6 570 aa19.84■□□□□ 0.77
VIM-209ENST00000544301 KCTD17Q8N5Z5 321 aa19.84■□□□□ 0.77
VIM-209ENST00000544301 HSD17B14Q9BPX1 270 aa19.84■□□□□ 0.77
VIM-209ENST00000544301 GANQ9H2C0 597 aa19.84■□□□□ 0.77
VIM-209ENST00000544301 ZCCHC17Q9NP64 241 aaKnown RBP19.84■□□□□ 0.77
VIM-209ENST00000544301 SALL4Q9UJQ4 1053 aa19.84■□□□□ 0.77
VIM-209ENST00000544301 HDAC9Q9UKV0 1011 aa19.84■□□□□ 0.77
VIM-209ENST00000544301 CALUO43852 315 aaPredicted RBP19.84■□□□□ 0.77
VIM-209ENST00000544301 EPS15P42566 896 aa19.84■□□□□ 0.77
VIM-209ENST00000544301 RASSF7Q02833 373 aa19.84■□□□□ 0.77
VIM-209ENST00000544301 BMT2Q1RMZ1 405 aa19.84■□□□□ 0.77
VIM-209ENST00000544301 SPDYE2Q495Y8 402 aa19.84■□□□□ 0.77
VIM-209ENST00000544301 CHURC1Q8WUH1 139 aa19.84■□□□□ 0.77
VIM-209ENST00000544301 BCAS3Q9H6U6 928 aa19.84■□□□□ 0.77
VIM-209ENST00000544301 TBCAO75347 108 aaKnown RBP19.83■□□□□ 0.77
VIM-209ENST00000544301 PRLRP16471 622 aa19.83■□□□□ 0.77
VIM-209ENST00000544301 CTTNQ14247 550 aaKnown RBP19.83■□□□□ 0.77
VIM-209ENST00000544301 RINT1Q6NUQ1 792 aa19.83■□□□□ 0.77
VIM-209ENST00000544301 SLC30A10Q6XR72 485 aa19.83■□□□□ 0.77
VIM-209ENST00000544301 CREG2Q8IUH2 290 aa19.83■□□□□ 0.77
VIM-209ENST00000544301 TXLNBQ8N3L3 684 aa19.83■□□□□ 0.77
VIM-209ENST00000544301 MSL3Q8N5Y2 521 aaKnown RBP19.83■□□□□ 0.77
VIM-209ENST00000544301 DRC1Q96MC2 740 aa19.83■□□□□ 0.77
VIM-209ENST00000544301 ALS2CR12Q96Q35 445 aa19.83■□□□□ 0.77
VIM-209ENST00000544301 TUFT1Q9NNX1 390 aa19.83■□□□□ 0.77
VIM-209ENST00000544301 RNF216Q9NWF9 866 aaPredicted RBP19.83■□□□□ 0.77
VIM-209ENST00000544301 ARMCX3Q9UH62 379 aaPredicted RBP19.83■□□□□ 0.77
VIM-209ENST00000544301 TARSL2A2RTX5 802 aaKnown RBP19.82■□□□□ 0.76
VIM-209ENST00000544301 PSMD10O75832 226 aa19.82■□□□□ 0.76
VIM-209ENST00000544301 GRIPAP1Q4V328 841 aa19.82■□□□□ 0.76
VIM-209ENST00000544301 LRCH2Q5VUJ6 765 aa19.82■□□□□ 0.76
VIM-209ENST00000544301 OGFOD1Q8N543 542 aa19.82■□□□□ 0.76
VIM-209ENST00000544301 ANKRD13CQ8N6S4 541 aa19.82■□□□□ 0.76
VIM-209ENST00000544301 SLC5A5Q92911 643 aa19.82■□□□□ 0.76
VIM-209ENST00000544301 VCPKMTQ9H867 229 aa19.82■□□□□ 0.76
VIM-209ENST00000544301 POLD4Q9HCU8 107 aa19.82■□□□□ 0.76
VIM-209ENST00000544301 AIPL1Q9NZN9 384 aa19.82■□□□□ 0.76
VIM-209ENST00000544301 FRMD4AQ9P2Q2 1039 aaPredicted RBP19.82■□□□□ 0.76
VIM-209ENST00000544301 ZBTB12Q9Y330 459 aaPredicted RBP19.82■□□□□ 0.76
VIM-209ENST00000544301 H3BQF6 201 aa19.82■□□□□ 0.76
VIM-209ENST00000544301 SLITRK3O94933 977 aa19.82■□□□□ 0.76
VIM-209ENST00000544301 RXRBP28702 533 aa19.82■□□□□ 0.76
VIM-209ENST00000544301 PPP2R5CQ13362 524 aa19.82■□□□□ 0.76
VIM-209ENST00000544301 RAPGEF1Q13905 1077 aa19.82■□□□□ 0.76
VIM-209ENST00000544301 EZH2Q15910 746 aaKnown RBP19.82■□□□□ 0.76
VIM-209ENST00000544301 DPY19L2P1Q6NXN4 242 aa19.82■□□□□ 0.76
VIM-209ENST00000544301 CDAN1Q8IWY9 1227 aa19.82■□□□□ 0.76
VIM-209ENST00000544301 RTKN2Q8IZC4 609 aa19.82■□□□□ 0.76
VIM-209ENST00000544301 LARGE2Q8N3Y3 721 aa19.82■□□□□ 0.76
VIM-209ENST00000544301 PIGOQ8TEQ8 1089 aa19.82■□□□□ 0.76
VIM-209ENST00000544301 DYDC2Q96IM9 177 aa19.82■□□□□ 0.76
VIM-209ENST00000544301 PSMD1Q99460 953 aa19.82■□□□□ 0.76
VIM-209ENST00000544301 TYW1Q9NV66 732 aaKnown RBP19.82■□□□□ 0.76
VIM-209ENST00000544301 STK32BQ9NY57 414 aa19.82■□□□□ 0.76
VIM-209ENST00000544301 ASTN1O14525 1302 aa19.81■□□□□ 0.76
VIM-209ENST00000544301 GCNT3O95395 438 aa19.81■□□□□ 0.76
VIM-209ENST00000544301 RNF10Q8N5U6 811 aaKnown RBP19.81■□□□□ 0.76
VIM-209ENST00000544301 TTLL6Q8N841 843 aa19.81■□□□□ 0.76
VIM-209ENST00000544301 VEZTQ9HBM0 779 aa19.81■□□□□ 0.76
VIM-209ENST00000544301 PDE11AQ9HCR9 933 aa19.81■□□□□ 0.76
VIM-209ENST00000544301 OLFML3Q9NRN5 406 aa19.81■□□□□ 0.76
VIM-209ENST00000544301 MRPL11Q9Y3B7 192 aaKnown RBP19.81■□□□□ 0.76
VIM-209ENST00000544301 COL4A5P29400 1685 aa19.81■□□□□ 0.76
VIM-209ENST00000544301 PLA2G6O60733 806 aa19.81■□□□□ 0.76
VIM-209ENST00000544301 AKAP3O75969 853 aa19.81■□□□□ 0.76
VIM-209ENST00000544301 AFPP02771 609 aaKnown RBP19.81■□□□□ 0.76
VIM-209ENST00000544301 NR3C1P04150 777 aa19.81■□□□□ 0.76
VIM-209ENST00000544301 GAP43P17677 238 aa19.81■□□□□ 0.76
VIM-209ENST00000544301 MCM3P25205 808 aa19.81■□□□□ 0.76
VIM-209ENST00000544301 UBXN2AP68543 259 aa19.81■□□□□ 0.76
VIM-209ENST00000544301 CASP8Q14790 479 aa19.81■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms