RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 PPME1Q9Y570 386 aa19.69■□□□□ 0.74
CLSTN3-210ENST00000540931 LONP1P36776 959 aaKnown RBP19.68■□□□□ 0.74
CLSTN3-210ENST00000540931 SP4Q02446 784 aa19.68■□□□□ 0.74
CLSTN3-210ENST00000540931 STK38Q15208 465 aa19.68■□□□□ 0.74
CLSTN3-210ENST00000540931 TMEM63BQ5T3F8 832 aa19.68■□□□□ 0.74
CLSTN3-210ENST00000540931 SESTD1Q86VW0 696 aa19.68■□□□□ 0.74
CLSTN3-210ENST00000540931 SENP6Q9GZR1 1112 aaPredicted RBP19.68■□□□□ 0.74
CLSTN3-210ENST00000540931 UNC45AQ9H3U1 944 aa19.68■□□□□ 0.74
CLSTN3-210ENST00000540931 NRBP2Q9NSY0 501 aa19.68■□□□□ 0.74
CLSTN3-210ENST00000540931 VAV3Q9UKW4 847 aa19.68■□□□□ 0.74
CLSTN3-210ENST00000540931 MAFBQ9Y5Q3 323 aaPredicted RBP19.68■□□□□ 0.74
CLSTN3-210ENST00000540931 NR2E3Q9Y5X4 410 aa19.68■□□□□ 0.74
CLSTN3-210ENST00000540931 PPP6R2O75170 966 aa19.67■□□□□ 0.74
CLSTN3-210ENST00000540931 CCNE2O96020 404 aa19.67■□□□□ 0.74
CLSTN3-210ENST00000540931 TECP42680 631 aa19.67■□□□□ 0.74
CLSTN3-210ENST00000540931 PSMC5P62195 406 aa19.67■□□□□ 0.74
CLSTN3-210ENST00000540931 CSPP1Q1MSJ5 1256 aa19.67■□□□□ 0.74
CLSTN3-210ENST00000540931 CXCL17Q6UXB2 119 aa19.67■□□□□ 0.74
CLSTN3-210ENST00000540931 C7orf31Q8N865 590 aa19.67■□□□□ 0.74
CLSTN3-210ENST00000540931 IGSF22Q8N9C0 903 aa19.67■□□□□ 0.74
CLSTN3-210ENST00000540931 PAWRQ96IZ0 340 aaKnown RBP19.67■□□□□ 0.74
CLSTN3-210ENST00000540931 C16orf70Q9BSU1 422 aa19.67■□□□□ 0.74
CLSTN3-210ENST00000540931 TMEM60Q9H2L4 133 aa19.67■□□□□ 0.74
CLSTN3-210ENST00000540931 LRWD1Q9UFC0 647 aa19.67■□□□□ 0.74
CLSTN3-210ENST00000540931 MYADML2A6NDP7 307 aa19.66■□□□□ 0.74
CLSTN3-210ENST00000540931 RRN3P2A6NIE6 340 aa19.66■□□□□ 0.74
CLSTN3-210ENST00000540931 ARVCFO00192 962 aa19.66■□□□□ 0.74
CLSTN3-210ENST00000540931 HAS3O00219 553 aa19.66■□□□□ 0.74
CLSTN3-210ENST00000540931 TLR3O15455 904 aaKnown RBP19.66■□□□□ 0.74
CLSTN3-210ENST00000540931 CHMP2AO43633 222 aa19.66■□□□□ 0.74
CLSTN3-210ENST00000540931 XRCC6P12956 609 aaKnown RBP eCLIP19.66■□□□□ 0.74
CLSTN3-210ENST00000540931 QARSP47897 775 aaKnown RBP19.66■□□□□ 0.74
CLSTN3-210ENST00000540931 PSEN2P49810 448 aa19.66■□□□□ 0.74
CLSTN3-210ENST00000540931 ITGA7Q13683 1181 aa19.66■□□□□ 0.74
CLSTN3-210ENST00000540931 MFSD10Q14728 455 aa19.66■□□□□ 0.74
CLSTN3-210ENST00000540931 UTP14CQ5TAP6 766 aaKnown RBP19.66■□□□□ 0.74
CLSTN3-210ENST00000540931 KRT79Q5XKE5 535 aa19.66■□□□□ 0.74
CLSTN3-210ENST00000540931 NCAPH2Q6IBW4 605 aa19.66■□□□□ 0.74
CLSTN3-210ENST00000540931 SWSAP1Q6NVH7 229 aa19.66■□□□□ 0.74
CLSTN3-210ENST00000540931 PDXDC2PQ6P474 469 aa19.66■□□□□ 0.74
CLSTN3-210ENST00000540931 OTUD6AQ7L8S5 288 aa19.66■□□□□ 0.74
CLSTN3-210ENST00000540931 BBXQ8WY36 941 aaPredicted RBP19.66■□□□□ 0.74
CLSTN3-210ENST00000540931 TOX2Q96NM4 488 aa19.66■□□□□ 0.74
CLSTN3-210ENST00000540931 ZSWIM4Q9H7M6 989 aa19.66■□□□□ 0.74
CLSTN3-210ENST00000540931 TUFT1Q9NNX1 390 aa19.66■□□□□ 0.74
CLSTN3-210ENST00000540931 SRPRBQ9Y5M8 271 aaKnown RBP19.66■□□□□ 0.74
CLSTN3-210ENST00000540931 NRCAMQ92823 1304 aa19.66■□□□□ 0.74
CLSTN3-210ENST00000540931 WNT7AO00755 349 aa19.65■□□□□ 0.74
CLSTN3-210ENST00000540931 SPTLC2O15270 562 aa19.65■□□□□ 0.74
CLSTN3-210ENST00000540931 HBP1O60381 514 aa19.65■□□□□ 0.74
CLSTN3-210ENST00000540931 TXLNAP40222 546 aa19.65■□□□□ 0.74
CLSTN3-210ENST00000540931 SPIRE1Q08AE8 756 aa19.65■□□□□ 0.74
CLSTN3-210ENST00000540931 PKP1Q13835 747 aa19.65■□□□□ 0.74
CLSTN3-210ENST00000540931 NBR1Q14596 966 aa19.65■□□□□ 0.74
CLSTN3-210ENST00000540931 KIAA0753Q2KHM9 967 aa19.65■□□□□ 0.74
CLSTN3-210ENST00000540931 SLC39A5Q6ZMH5 540 aa19.65■□□□□ 0.74
CLSTN3-210ENST00000540931 C4orf19Q8IY42 314 aa19.65■□□□□ 0.74
CLSTN3-210ENST00000540931 CKAP2LQ8IYA6 745 aa19.65■□□□□ 0.74
CLSTN3-210ENST00000540931 KRI1Q8N9T8 703 aaKnown RBP19.65■□□□□ 0.74
CLSTN3-210ENST00000540931 SLC43A3Q8NBI5 491 aa19.65■□□□□ 0.74
CLSTN3-210ENST00000540931 LINC00301Q8NCQ3 95 aa19.65■□□□□ 0.74
CLSTN3-210ENST00000540931 USP28Q96RU2 1077 aa19.65■□□□□ 0.74
CLSTN3-210ENST00000540931 POLR3CQ9BUI4 534 aaPredicted RBP19.65■□□□□ 0.74
CLSTN3-210ENST00000540931 NT5C3AQ9H0P0 336 aa19.65■□□□□ 0.74
CLSTN3-210ENST00000540931 KDM3AQ9Y4C1 1321 aa19.65■□□□□ 0.74
CLSTN3-210ENST00000540931 DCDC2CA8MYV0 355 aa19.64■□□□□ 0.73
CLSTN3-210ENST00000540931 SORBS3O60504 671 aa19.64■□□□□ 0.73
CLSTN3-210ENST00000540931 LYPLA2O95372 231 aa19.64■□□□□ 0.73
CLSTN3-210ENST00000540931 RPA1P27694 616 aa19.64■□□□□ 0.73
CLSTN3-210ENST00000540931 MNX1P50219 401 aaPredicted RBP19.64■□□□□ 0.73
CLSTN3-210ENST00000540931 SNX17Q15036 470 aa19.64■□□□□ 0.73
CLSTN3-210ENST00000540931 PTPAQ15257 358 aa19.64■□□□□ 0.73
CLSTN3-210ENST00000540931 XKR3Q5GH77 459 aa19.64■□□□□ 0.73
CLSTN3-210ENST00000540931 ZNF710Q8N1W2 664 aa19.64■□□□□ 0.73
CLSTN3-210ENST00000540931 ZNF579Q8NAF0 562 aaKnown RBP19.64■□□□□ 0.73
CLSTN3-210ENST00000540931 ATP8B4Q8TF62 1192 aa19.64■□□□□ 0.73
CLSTN3-210ENST00000540931 JPH2Q9BR39 696 aaPredicted RBP19.64■□□□□ 0.73
CLSTN3-210ENST00000540931 BCAS3Q9H6U6 928 aa19.64■□□□□ 0.73
CLSTN3-210ENST00000540931 GABBR1Q9UBS5 961 aa19.64■□□□□ 0.73
CLSTN3-210ENST00000540931 ZDHHC9Q9Y397 364 aa19.64■□□□□ 0.73
CLSTN3-210ENST00000540931 CLIC4Q9Y696 253 aa19.64■□□□□ 0.73
CLSTN3-210ENST00000540931 IGSF9BQ9UPX0 1349 aa19.64■□□□□ 0.73
CLSTN3-210ENST00000540931 COL1A2P08123 1366 aa19.64■□□□□ 0.73
CLSTN3-210ENST00000540931 POTEB3A0JP26 581 aa19.63■□□□□ 0.73
CLSTN3-210ENST00000540931 VWA3AA6NCI4 1184 aa19.63■□□□□ 0.73
CLSTN3-210ENST00000540931 UBA7P41226 1012 aa19.63■□□□□ 0.73
CLSTN3-210ENST00000540931 ZNF484Q5JVG2 852 aa19.63■□□□□ 0.73
CLSTN3-210ENST00000540931 FOXD4L5Q5VV16 416 aaPredicted RBP19.63■□□□□ 0.73
CLSTN3-210ENST00000540931 POTEBQ6S5H4 581 aa19.63■□□□□ 0.73
CLSTN3-210ENST00000540931 ANKRD33Q7Z3H0 272 aa19.63■□□□□ 0.73
CLSTN3-210ENST00000540931 CCDC60Q8IWA6 550 aaPredicted RBP19.63■□□□□ 0.73
CLSTN3-210ENST00000540931 FOXD4L4Q8WXT5 416 aaPredicted RBP19.63■□□□□ 0.73
CLSTN3-210ENST00000540931 KAT2BQ92831 832 aa19.63■□□□□ 0.73
CLSTN3-210ENST00000540931 HSD17B14Q9BPX1 270 aa19.63■□□□□ 0.73
CLSTN3-210ENST00000540931 EIF2AK1Q9BQI3 630 aaKnown RBP19.63■□□□□ 0.73
CLSTN3-210ENST00000540931 PYM1Q9BRP8 204 aaKnown RBP19.63■□□□□ 0.73
CLSTN3-210ENST00000540931 RCOR1Q9UKL0 485 aa19.63■□□□□ 0.73
CLSTN3-210ENST00000540931 A0A1W2PPC1 479 aa19.62■□□□□ 0.73
CLSTN3-210ENST00000540931 ZNF286BP0CG31 522 aa19.62■□□□□ 0.73
CLSTN3-210ENST00000540931 NBPF20Q3BBV1 942 aa19.62■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms