RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 SERBP1Q8NC51 408 aaKnown RBP eCLIP10.29□□□□□ -0.76
CLIP1-214ENST00000540539 ZNF333Q96JL9 665 aa10.29□□□□□ -0.76
CLIP1-214ENST00000540539 CHP1Q99653 195 aa10.29□□□□□ -0.76
CLIP1-214ENST00000540539 CYP39A1Q9NYL5 469 aa10.29□□□□□ -0.76
CLIP1-214ENST00000540539 SMARCAL1Q9NZC9 954 aa10.29□□□□□ -0.76
CLIP1-214ENST00000540539 CTTNBP2NLQ9P2B4 639 aa10.29□□□□□ -0.76
CLIP1-214ENST00000540539 EPN1Q9Y6I3 576 aaPredicted RBP10.29□□□□□ -0.76
CLIP1-214ENST00000540539 MRC1P22897 1456 aa10.29□□□□□ -0.76
CLIP1-214ENST00000540539 PTPDC1A2A3K4 754 aa10.29□□□□□ -0.76
CLIP1-214ENST00000540539 SIGLEC16A6NMB1 481 aa10.29□□□□□ -0.76
CLIP1-214ENST00000540539 CTNND1O60716 968 aaKnown RBP10.29□□□□□ -0.76
CLIP1-214ENST00000540539 CTDNEP1O95476 244 aa10.29□□□□□ -0.76
CLIP1-214ENST00000540539 GM2AP17900 193 aa10.29□□□□□ -0.76
CLIP1-214ENST00000540539 RXRBP28702 533 aa10.29□□□□□ -0.76
CLIP1-214ENST00000540539 ADARP55265 1226 aaKnown RBP10.29□□□□□ -0.76
CLIP1-214ENST00000540539 SH3BGRP55822 239 aaPredicted RBP10.29□□□□□ -0.76
CLIP1-214ENST00000540539 PTK7Q13308 1070 aa10.29□□□□□ -0.76
CLIP1-214ENST00000540539 KLC3Q6P597 504 aa10.29□□□□□ -0.76
CLIP1-214ENST00000540539 MDM1Q8TC05 714 aa10.29□□□□□ -0.76
CLIP1-214ENST00000540539 IFT81Q8WYA0 676 aa10.29□□□□□ -0.76
CLIP1-214ENST00000540539 GATA6Q92908 595 aa10.29□□□□□ -0.76
CLIP1-214ENST00000540539 HAUS1Q96CS2 278 aa10.29□□□□□ -0.76
CLIP1-214ENST00000540539 IFT74Q96LB3 600 aa10.29□□□□□ -0.76
CLIP1-214ENST00000540539 ZMAT2Q96NC0 199 aaKnown RBP10.29□□□□□ -0.76
CLIP1-214ENST00000540539 PLCB1Q9NQ66 1216 aa10.29□□□□□ -0.76
CLIP1-214ENST00000540539 GDF3Q9NR23 364 aa10.29□□□□□ -0.76
CLIP1-214ENST00000540539 POLR3EQ9NVU0 708 aa10.29□□□□□ -0.76
CLIP1-214ENST00000540539 NMRK1Q9NWW6 199 aa10.29□□□□□ -0.76
CLIP1-214ENST00000540539 ZNF148Q9UQR1 794 aa10.29□□□□□ -0.76
CLIP1-214ENST00000540539 ITGB4P16144 1822 aa10.29□□□□□ -0.76
CLIP1-214ENST00000540539 BRWD3Q6RI45 1802 aa10.28□□□□□ -0.76
CLIP1-214ENST00000540539 BTBD11A6QL63 1104 aa10.28□□□□□ -0.76
CLIP1-214ENST00000540539 F6X3S4 739 aa10.28□□□□□ -0.76
CLIP1-214ENST00000540539 H0YGN5 161 aa10.28□□□□□ -0.76
CLIP1-214ENST00000540539 ACTN4O43707 911 aaKnown RBP10.28□□□□□ -0.76
CLIP1-214ENST00000540539 ATP9AO75110 1047 aa10.28□□□□□ -0.76
CLIP1-214ENST00000540539 CDC25AP30304 524 aa10.28□□□□□ -0.76
CLIP1-214ENST00000540539 TCF7P36402 384 aaPredicted RBP10.28□□□□□ -0.76
CLIP1-214ENST00000540539 ZNF844Q08AG5 666 aa10.28□□□□□ -0.76
CLIP1-214ENST00000540539 TTLL12Q14166 644 aaPredicted RBP10.28□□□□□ -0.76
CLIP1-214ENST00000540539 POTEEQ6S8J3 1075 aa10.28□□□□□ -0.76
CLIP1-214ENST00000540539 LRIG3Q6UXM1 1119 aa10.28□□□□□ -0.76
CLIP1-214ENST00000540539 RAB11FIP4Q86YS3 637 aa10.28□□□□□ -0.76
CLIP1-214ENST00000540539 IFT20Q8IY31 132 aa10.28□□□□□ -0.76
CLIP1-214ENST00000540539 RBBP8NLQ8NC74 664 aaPredicted RBP10.28□□□□□ -0.76
CLIP1-214ENST00000540539 LSM14AQ8ND56 463 aaKnown RBP10.28□□□□□ -0.76
CLIP1-214ENST00000540539 DQX1Q8TE96 717 aaKnown RBP10.28□□□□□ -0.76
CLIP1-214ENST00000540539 FERMT2Q96AC1 680 aa10.28□□□□□ -0.76
CLIP1-214ENST00000540539 SH3GL1Q99961 368 aa10.28□□□□□ -0.76
CLIP1-214ENST00000540539 ELAC2Q9BQ52 826 aaKnown RBP10.28□□□□□ -0.76
CLIP1-214ENST00000540539 KRT23Q9C075 422 aa10.28□□□□□ -0.76
CLIP1-214ENST00000540539 BABAM1Q9NWV8 329 aa10.28□□□□□ -0.76
CLIP1-214ENST00000540539 ADD3Q9UEY8 706 aaKnown RBP10.28□□□□□ -0.76
CLIP1-214ENST00000540539 SNX12Q9UMY4 172 aa10.28□□□□□ -0.76
CLIP1-214ENST00000540539 NFS1Q9Y697 457 aa10.28□□□□□ -0.76
CLIP1-214ENST00000540539 DOT1LQ8TEK3 1739 aa10.28□□□□□ -0.76
CLIP1-214ENST00000540539 SPTLC1O15269 473 aa10.28□□□□□ -0.76
CLIP1-214ENST00000540539 NVLO15381 856 aaKnown RBP10.28□□□□□ -0.76
CLIP1-214ENST00000540539 BIRC5O15392 142 aa10.28□□□□□ -0.76
CLIP1-214ENST00000540539 PMS2P54278 862 aa10.28□□□□□ -0.76
CLIP1-214ENST00000540539 FXNQ16595 210 aa10.28□□□□□ -0.76
CLIP1-214ENST00000540539 SLC9C2Q5TAH2 1124 aa10.28□□□□□ -0.76
CLIP1-214ENST00000540539 PHLDB3Q6NSJ2 640 aa10.28□□□□□ -0.76
CLIP1-214ENST00000540539 SLC7A5P1Q8MH63 180 aa10.28□□□□□ -0.76
CLIP1-214ENST00000540539 TMCO5AQ8N6Q1 288 aa10.28□□□□□ -0.76
CLIP1-214ENST00000540539 PDCD7Q8N8D1 485 aaKnown RBP10.28□□□□□ -0.76
CLIP1-214ENST00000540539 UTP4Q969X6 686 aaKnown RBP10.28□□□□□ -0.76
CLIP1-214ENST00000540539 EVI5LQ96CN4 794 aa10.28□□□□□ -0.76
CLIP1-214ENST00000540539 PBKQ96KB5 322 aa10.28□□□□□ -0.76
CLIP1-214ENST00000540539 SETDB2Q96T68 719 aa10.28□□□□□ -0.76
CLIP1-214ENST00000540539 LLPHQ9BRT6 129 aaKnown RBP10.28□□□□□ -0.76
CLIP1-214ENST00000540539 SLC7A5P2Q9GIP4 190 aa10.28□□□□□ -0.76
CLIP1-214ENST00000540539 MIS12Q9H081 205 aa10.28□□□□□ -0.76
CLIP1-214ENST00000540539 SAMD15Q9P1V8 674 aa10.28□□□□□ -0.76
CLIP1-214ENST00000540539 USP20Q9Y2K6 914 aa10.28□□□□□ -0.76
CLIP1-214ENST00000540539 ABCC12Q96J65 1359 aa10.28□□□□□ -0.76
CLIP1-214ENST00000540539 KDM3BQ7LBC6 1761 aa10.28□□□□□ -0.76
CLIP1-214ENST00000540539 TMEM110-MUSTN1A8MSY1 372 aa10.27□□□□□ -0.76
CLIP1-214ENST00000540539 WDR46O15213 610 aaKnown RBP10.27□□□□□ -0.76
CLIP1-214ENST00000540539 HSPA9P38646 679 aaKnown RBP10.27□□□□□ -0.76
CLIP1-214ENST00000540539 GALK1P51570 392 aa10.27□□□□□ -0.76
CLIP1-214ENST00000540539 MAGOHP61326 146 aaKnown RBP10.27□□□□□ -0.76
CLIP1-214ENST00000540539 RNASELQ05823 741 aaKnown RBP10.27□□□□□ -0.76
CLIP1-214ENST00000540539 ZNF827Q17R98 1081 aa10.27□□□□□ -0.76
CLIP1-214ENST00000540539 LIN52Q52LA3 116 aa10.27□□□□□ -0.76
CLIP1-214ENST00000540539 LRRC34Q8IZ02 419 aa10.27□□□□□ -0.76
CLIP1-214ENST00000540539 ENDOVQ8N8Q3 282 aaKnown RBP10.27□□□□□ -0.76
CLIP1-214ENST00000540539 SUPT20HQ8NEM7 779 aa10.27□□□□□ -0.76
CLIP1-214ENST00000540539 MAGOHBQ96A72 148 aaKnown RBP10.27□□□□□ -0.76
CLIP1-214ENST00000540539 DDX23Q9BUQ8 820 aaKnown RBP10.27□□□□□ -0.76
CLIP1-214ENST00000540539 GPHNQ9NQX3 736 aaPredicted RBP10.27□□□□□ -0.76
CLIP1-214ENST00000540539 EHD2Q9NZN4 543 aa10.27□□□□□ -0.76
CLIP1-214ENST00000540539 PNMA3Q9UL41 463 aa10.27□□□□□ -0.76
CLIP1-214ENST00000540539 NOVA2Q9UNW9 492 aaKnown RBP10.27□□□□□ -0.76
CLIP1-214ENST00000540539 HPSEQ9Y251 543 aa10.27□□□□□ -0.76
CLIP1-214ENST00000540539 PRELID1Q9Y255 219 aa10.27□□□□□ -0.76
CLIP1-214ENST00000540539 ENDOUP21128 410 aaKnown RBP10.27□□□□□ -0.77
CLIP1-214ENST00000540539 MAP7Q14244 749 aa10.27□□□□□ -0.77
CLIP1-214ENST00000540539 FAM182BQ5T319 152 aa10.27□□□□□ -0.77
CLIP1-214ENST00000540539 NEPROQ6NW34 567 aa10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms