RNA–Protein interactions for RNA: ENST00000533818.5

CSDE1-215, Transcript of cold shock domain containing E1, humanhuman

TSL 4

Gene CSDE1, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-215ENST00000533818 NGRNQ9NPE2 291 aaKnown RBP12.44□□□□□ -0.42
CSDE1-215ENST00000533818 PUF60Q9UHX1 559 aaKnown RBP12.44□□□□□ -0.42
CSDE1-215ENST00000533818 PNMA2Q9UL42 364 aa12.44□□□□□ -0.42
CSDE1-215ENST00000533818 PCDHGA2Q9Y5H1 932 aa12.44□□□□□ -0.42
CSDE1-215ENST00000533818 HCFC2Q9Y5Z7 792 aa12.44□□□□□ -0.42
CSDE1-215ENST00000533818 DYNC1LI1Q9Y6G9 523 aaKnown RBP12.44□□□□□ -0.42
CSDE1-215ENST00000533818 TTC3P53804 2025 aa12.44□□□□□ -0.42
CSDE1-215ENST00000533818 CHGBP05060 677 aa12.43□□□□□ -0.42
CSDE1-215ENST00000533818 ATP8B2P98198 1209 aa12.43□□□□□ -0.42
CSDE1-215ENST00000533818 SYDE2Q5VT97 1194 aa12.43□□□□□ -0.42
CSDE1-215ENST00000533818 MYSM1Q5VVJ2 828 aa12.43□□□□□ -0.42
CSDE1-215ENST00000533818 PHLDB3Q6NSJ2 640 aa12.43□□□□□ -0.42
CSDE1-215ENST00000533818 KANK3Q6NY19 840 aa12.43□□□□□ -0.42
CSDE1-215ENST00000533818 C12orf76Q8N812 135 aaPredicted RBP12.43□□□□□ -0.42
CSDE1-215ENST00000533818 NSUN6Q8TEA1 469 aaKnown RBP12.43□□□□□ -0.42
CSDE1-215ENST00000533818 LINC01599Q8WXQ3 324 aa12.43□□□□□ -0.42
CSDE1-215ENST00000533818 DDX1Q92499 740 aaKnown RBP12.43□□□□□ -0.42
CSDE1-215ENST00000533818 GMEB2Q9UKD1 530 aa12.43□□□□□ -0.42
CSDE1-215ENST00000533818 LZTS1Q9Y250 596 aa12.43□□□□□ -0.42
CSDE1-215ENST00000533818 FANCMQ8IYD8 2048 aa12.43□□□□□ -0.42
CSDE1-215ENST00000533818 TFAP4Q01664 338 aa12.42□□□□□ -0.42
CSDE1-215ENST00000533818 SPEM2Q0P670 501 aa12.42□□□□□ -0.42
CSDE1-215ENST00000533818 CELF3Q5SZQ8 465 aaKnown RBP12.42□□□□□ -0.42
CSDE1-215ENST00000533818 TMC7Q7Z402 723 aa12.42□□□□□ -0.42
CSDE1-215ENST00000533818 TAAR1Q96RJ0 339 aa12.42□□□□□ -0.42
CSDE1-215ENST00000533818 IWS1Q96ST2 819 aa12.42□□□□□ -0.42
CSDE1-215ENST00000533818 EPC1Q9H2F5 836 aa12.42□□□□□ -0.42
CSDE1-215ENST00000533818 IGSF9Q9P2J2 1179 aa12.42□□□□□ -0.42
CSDE1-215ENST00000533818 FBXO4Q9UKT5 387 aa12.42□□□□□ -0.42
CSDE1-215ENST00000533818 LRFN2Q9ULH4 789 aa12.42□□□□□ -0.42
CSDE1-215ENST00000533818 STX8Q9UNK0 236 aa12.42□□□□□ -0.42
CSDE1-215ENST00000533818 LHX6Q9UPM6 363 aa12.42□□□□□ -0.42
CSDE1-215ENST00000533818 PLXNA4Q9HCM2 1894 aa12.42□□□□□ -0.42
CSDE1-215ENST00000533818 GSG1L2A8MUP6 293 aa12.41□□□□□ -0.42
CSDE1-215ENST00000533818 C1QTNF9BB2RNN3 333 aa12.41□□□□□ -0.42
CSDE1-215ENST00000533818 LAMTOR5O43504 91 aa12.41□□□□□ -0.42
CSDE1-215ENST00000533818 TBC1D4O60343 1298 aa12.41□□□□□ -0.42
CSDE1-215ENST00000533818 EIF3JO75822 258 aaKnown RBP12.41□□□□□ -0.42
CSDE1-215ENST00000533818 C1QTNF9P0C862 333 aa12.41□□□□□ -0.42
CSDE1-215ENST00000533818 GLULP15104 373 aa12.41□□□□□ -0.42
CSDE1-215ENST00000533818 ARHGAP4P98171 946 aa12.41□□□□□ -0.42
CSDE1-215ENST00000533818 CSTF1Q05048 431 aaKnown RBP12.41□□□□□ -0.42
CSDE1-215ENST00000533818 RING1Q06587 406 aa12.41□□□□□ -0.42
CSDE1-215ENST00000533818 UBE3CQ15386 1083 aa12.41□□□□□ -0.42
CSDE1-215ENST00000533818 PPP4R3BQ5MIZ7 849 aa12.41□□□□□ -0.42
CSDE1-215ENST00000533818 FBXO47Q5MNV8 452 aa12.41□□□□□ -0.42
CSDE1-215ENST00000533818 GIMAP6Q6P9H5 292 aa12.41□□□□□ -0.42
CSDE1-215ENST00000533818 BTNL9Q6UXG8 535 aa12.41□□□□□ -0.42
CSDE1-215ENST00000533818 TSHZ1Q6ZSZ6 1077 aa12.41□□□□□ -0.42
CSDE1-215ENST00000533818 COLGALT1Q8NBJ5 622 aa12.41□□□□□ -0.42
CSDE1-215ENST00000533818 RGS22Q8NE09 1264 aa12.41□□□□□ -0.42
CSDE1-215ENST00000533818 MRPS27Q92552 414 aaKnown RBP12.41□□□□□ -0.42
CSDE1-215ENST00000533818 RMDN3Q96TC7 470 aa12.41□□□□□ -0.42
CSDE1-215ENST00000533818 GPR20Q99678 358 aa12.41□□□□□ -0.42
CSDE1-215ENST00000533818 PUS7LQ9H0K6 701 aaKnown RBP12.41□□□□□ -0.42
CSDE1-215ENST00000533818 MRS2Q9HD23 443 aa12.41□□□□□ -0.42
CSDE1-215ENST00000533818 SPATA6Q9NWH7 488 aaPredicted RBP12.41□□□□□ -0.42
CSDE1-215ENST00000533818 PAG1Q9NWQ8 432 aa12.41□□□□□ -0.42
CSDE1-215ENST00000533818 UNC79Q9P2D8 2635 aa12.41□□□□□ -0.42
CSDE1-215ENST00000533818 SUPT16HQ9Y5B9 1047 aaKnown RBP12.41□□□□□ -0.42
CSDE1-215ENST00000533818 CACNA1IQ9P0X4 2223 aa12.41□□□□□ -0.42
CSDE1-215ENST00000533818 NBEAQ8NFP9 2946 aa12.4□□□□□ -0.42
CSDE1-215ENST00000533818 GGPS1O95749 300 aa12.4□□□□□ -0.42
CSDE1-215ENST00000533818 SCG2P13521 617 aa12.4□□□□□ -0.42
CSDE1-215ENST00000533818 IBSPP21815 317 aaPredicted RBP12.4□□□□□ -0.42
CSDE1-215ENST00000533818 CD52P31358 61 aa12.4□□□□□ -0.42
CSDE1-215ENST00000533818 NONOQ15233 471 aaKnown RBP eCLIP12.4□□□□□ -0.422e-6■■□□□ 12.7
CSDE1-215ENST00000533818 UNQ6494/PRO21346Q6UXR6 183 aa12.4□□□□□ -0.42
CSDE1-215ENST00000533818 KDF1Q8NAX2 398 aaPredicted RBP12.4□□□□□ -0.42
CSDE1-215ENST00000533818 ZBTB44Q8NCP5 570 aa12.4□□□□□ -0.42
CSDE1-215ENST00000533818 DCAF4Q8WV16 495 aa12.4□□□□□ -0.42
CSDE1-215ENST00000533818 STRBPQ96SI9 672 aaKnown RBP12.4□□□□□ -0.42
CSDE1-215ENST00000533818 FTHL17Q9BXU8 183 aa12.4□□□□□ -0.42
CSDE1-215ENST00000533818 AGO3Q9H9G7 860 aaKnown RBP12.4□□□□□ -0.42
CSDE1-215ENST00000533818 ZSCAN32Q9NX65 697 aa12.4□□□□□ -0.42
CSDE1-215ENST00000533818 PLIN4Q96Q06 1357 aa12.4□□□□□ -0.42
CSDE1-215ENST00000533818 KIAA1671Q9BY89 1806 aa12.39□□□□□ -0.43
CSDE1-215ENST00000533818 TBKBP1A7MCY6 615 aa12.39□□□□□ -0.43
CSDE1-215ENST00000533818 CLASP2O75122 1294 aaKnown RBP12.39□□□□□ -0.43
CSDE1-215ENST00000533818 LGALS2P05162 132 aa12.39□□□□□ -0.43
CSDE1-215ENST00000533818 ADAM17P78536 824 aa12.39□□□□□ -0.43
CSDE1-215ENST00000533818 PLCB3Q01970 1234 aa12.39□□□□□ -0.43
CSDE1-215ENST00000533818 MGAT3Q09327 533 aa12.39□□□□□ -0.43
CSDE1-215ENST00000533818 ARHGEF16Q5VV41 709 aa12.39□□□□□ -0.43
CSDE1-215ENST00000533818 CCDC149Q6ZUS6 474 aa12.39□□□□□ -0.43
CSDE1-215ENST00000533818 RSPH3Q86UC2 560 aa12.39□□□□□ -0.43
CSDE1-215ENST00000533818 MRPL43Q8N983 215 aaKnown RBP12.39□□□□□ -0.43
CSDE1-215ENST00000533818 PJA1Q8NG27 643 aa12.39□□□□□ -0.43
CSDE1-215ENST00000533818 SYTL5Q8TDW5 730 aaPredicted RBP12.39□□□□□ -0.43
CSDE1-215ENST00000533818 RSAD2Q8WXG1 361 aa12.39□□□□□ -0.43
CSDE1-215ENST00000533818 TBC1D5Q92609 795 aa12.39□□□□□ -0.43
CSDE1-215ENST00000533818 ARHGAP45Q92619 1136 aa12.39□□□□□ -0.43
CSDE1-215ENST00000533818 MLXIPQ9HAP2 919 aa12.39□□□□□ -0.43
CSDE1-215ENST00000533818 GPCPD1Q9NPB8 672 aa12.39□□□□□ -0.43
CSDE1-215ENST00000533818 TYW1Q9NV66 732 aaKnown RBP12.39□□□□□ -0.43
CSDE1-215ENST00000533818 DZANK1Q9NVP4 752 aa12.39□□□□□ -0.43
CSDE1-215ENST00000533818 PCDHB7Q9Y5E2 793 aa12.39□□□□□ -0.43
CSDE1-215ENST00000533818 DSPP15924 2871 aaKnown RBP12.38□□□□□ -0.43
CSDE1-215ENST00000533818 LILRB5O75023 590 aa12.38□□□□□ -0.43
CSDE1-215ENST00000533818 LRRN2O75325 713 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms